Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 0.0e+00 2150.2 1091 100.0
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 0.0e+00 1889.8 1010 95.2
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 0.0e+00 1814.7 1087 86.7
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1739.9 1093 81.0
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1710.3 1091 79.3
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1143.3 1137 56.2
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1137.5 1143 55.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1125.9 1148 55.3
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1122.8 1143 56.4
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1095.1 1135 54.4
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1094.7 1114 56.0
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1091.3 1139 54.9
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1080.9 1130 54.2
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1078.2 1141 54.2
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1076.6 1111 54.4
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 2.2e-311 1072.4 1116 54.0
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 3.3e-310 1068.5 1153 54.0
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 7.4e-310 1067.4 1153 54.0
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 2.1e-309 1065.8 1110 54.1
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.1e-309 1065.8 1153 53.9
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.7e-309 1065.1 1154 53.9
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.8e-309 1064.7 1152 53.8
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 1.9e-305 1052.7 1104 53.7
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 2.1e-304 1049.3 1118 53.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.3e-303 1045.8 1101 53.9
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 5.1e-303 1044.6 1110 53.1
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 5.1e-303 1044.6 1125 53.0
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 1.1e-302 1043.5 1132 52.7
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 5.7e-302 1041.2 1107 54.2
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 5.7e-302 1041.2 1156 52.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 1.6e-301 1039.6 1109 53.1
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 2.0e-299 1032.7 1102 54.6
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 5.5e-297 1024.6 1131 52.4
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 5.5e-297 1024.6 1126 52.1
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 7.9e-296 1020.8 1109 51.9
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 2.3e-295 1019.2 1091 53.3
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 4.5e-291 1005.0 1132 52.3
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.0e-290 1003.8 1100 52.5
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 1.7e-290 1003.0 1135 51.4
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 5.5e-289 998.0 1116 51.3
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.2e-288 996.9 1148 51.0
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.3e-287 992.6 1015 57.1
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.3e-285 986.9 1112 50.6
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 1.7e-285 986.5 1154 49.7
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 2.2e-285 986.1 1124 50.7
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 5.0e-282 974.9 1135 50.0
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 1.1e-281 973.8 1108 51.7
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.4e-281 973.4 1154 49.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.2e-281 972.2 995 55.4
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 4.2e-281 971.8 1125 49.2
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 2.1e-280 969.5 1128 50.1
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 7.9e-280 967.6 1144 49.8
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.8e-276 956.4 1120 50.2
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 1.3e-274 950.3 1103 50.4
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 5.0e-274 948.3 1100 50.6
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 2.7e-272 942.6 1134 48.2
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 3.6e-272 942.2 1134 49.3
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 2.2e-269 932.9 1147 48.6
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.0e-267 926.4 1193 46.4
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 2.0e-267 926.4 1144 49.4
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 7.7e-267 924.5 973 54.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.3e-266 923.7 951 55.8
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.7e-266 923.3 964 54.9
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 5.0e-266 921.8 1143 49.1
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 6.8e-263 911.4 1183 47.3
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 2.7e-259 899.4 1118 48.8
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 1.0e-258 897.5 1148 47.4
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 1.9e-257 893.3 1116 48.0
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 7.2e-257 891.3 1107 46.9
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.8e-255 886.7 1113 47.3
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 9.8e-254 880.9 879 58.0
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 2.8e-253 879.4 1117 46.2
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 4.9e-253 878.6 1128 45.8
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 6.3e-253 878.2 1117 46.2
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 6.3e-253 878.2 1166 46.3
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.6e-251 873.6 1117 46.1
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 2.0e-251 873.2 1121 46.7
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.7e-251 872.8 1130 47.3
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 5.9e-251 871.7 1103 48.7
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 5.0e-250 868.6 1151 46.2
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.5e-249 867.1 1127 45.4
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 9.5e-249 864.4 1104 47.6
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 1.2e-248 864.0 1120 45.8
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 2.3e-247 859.8 1107 45.7
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 3.0e-247 859.4 1128 45.5
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.0e-247 859.4 1146 45.5
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 6.8e-247 858.2 1129 48.4
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.5e-246 857.1 1166 45.1
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 1.5e-246 857.1 1129 46.0
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 1.5e-246 857.1 1129 46.0
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.0e-246 856.7 1123 46.7
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.4e-246 855.9 1107 47.3
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.4e-246 855.9 1119 45.0
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 4.4e-246 855.5 1127 45.4
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 5.8e-246 855.1 1118 46.7
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 5.8e-246 855.1 1133 45.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 9.8e-246 854.4 1130 45.4
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.7e-245 853.6 1130 45.5
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.9e-245 852.8 1114 45.9
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 7.0e-244 848.2 1129 45.5
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 7.0e-244 848.2 1120 45.8
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.5e-241 839.7 1039 47.8
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 5.8e-238 828.6 1130 45.3
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.9e-237 825.5 710 62.7
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-236 823.9 709 63.2
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 7.0e-236 821.6 750 60.1
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 6.0e-235 818.5 711 62.3
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 7.3e-225 785.0 1136 43.8
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 6.8e-223 778.5 1141 42.1
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 4.4e-214 749.2 1139 42.8
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 5.8e-214 748.8 710 57.0
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 4.6e-211 739.2 666 60.4
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 6.9e-207 725.3 657 61.5
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.0e-206 723.8 505 73.1
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 8.4e-205 718.4 908 47.5
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 9.6e-201 704.9 537 67.8
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 4.0e-199 699.5 870 48.7
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.4e-198 696.4 905 46.1
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 3.8e-197 693.0 863 48.0
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 1.8e-194 684.1 437 77.3
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 6.3e-184 649.0 890 45.1
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.4e-183 647.1 639 57.4
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 5.0e-181 639.4 968 43.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 6.1e-179 632.5 1133 39.1
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 4.8e-176 622.9 654 54.7
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 5.9e-166 589.3 688 50.1
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 3.4e-129 467.2 464 54.5
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.4e-128 463.0 268 87.7
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.4e-128 463.0 268 87.7
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 9.8e-121 439.1 673 40.6
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.9e-111 408.3 414 55.1
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 3.2e-111 407.5 742 38.1
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 6.6e-101 373.2 342 55.3
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.9e-96 357.8 608 38.5
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.4e-96 356.7 608 38.3
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 3.3e-92 344.4 206 85.4
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 1.8e-74 285.4 609 35.6
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 2.1e-62 245.4 221 56.6
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 3.0e-53 214.9 142 78.2
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.4e-52 211.1 801 27.2
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 8.8e-45 186.8 678 28.2
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 2.2e-40 172.2 182 57.1
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.5e-39 168.7 148 59.5
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.1e-38 165.6 92 90.2
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 8.3e-35 153.7 159 58.5
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 3.5e-33 148.3 87 79.3
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 2.5e-23 115.5 385 28.3
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.2e-20 106.7 165 36.4
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 2.6e-20 105.5 67 70.1
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 5.8e-12 77.8 284 27.1
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 3.9e-08 65.1 224 29.0
Mapoly0105s0058 Marchantia polymorpha HOM05D027721 ORTHO05D031191 1.9e-07 62.8 231 26.0
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.3e-07 62.0 165 29.7
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 4.3e-07 61.6 110 32.7
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 8.1e-06 57.4 83 42.2


User provided reference genes

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