Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 8.5e-168 593.6 296 100.0
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.4e-157 559.7 331 87.3
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 7.4e-156 553.9 311 89.1
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 8.0e-150 533.9 296 87.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.6e-134 481.9 296 82.1
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.5e-121 438.7 296 73.0
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 5.0e-120 434.9 296 72.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.5e-119 433.3 295 72.2
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.9e-119 433.0 296 72.3
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 3.3e-119 432.2 296 72.0
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 5.6e-119 431.4 299 72.2
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 9.5e-119 430.6 297 73.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 2.1e-118 429.5 296 73.3
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.8e-118 429.1 297 71.7
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.2e-118 427.9 297 71.4
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 1.0e-117 427.2 296 72.0
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.0e-117 427.2 297 71.4
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.0e-117 425.2 296 71.3
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.0e-116 422.9 303 71.0
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 3.4e-116 422.2 299 70.2
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 4.4e-116 421.8 296 70.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 4.4e-116 421.8 296 70.9
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 7.5e-116 421.0 296 71.3
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 7.5e-116 421.0 296 72.6
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 9.8e-116 420.6 296 68.9
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.7e-115 419.9 296 69.9
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.7e-115 419.9 297 71.4
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 4.9e-115 418.3 296 70.6
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 6.4e-115 417.9 296 69.3
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 1.1e-114 417.2 299 70.6
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.2e-114 415.6 296 69.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 7.0e-114 414.5 284 72.5
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 9.2e-114 414.1 296 70.9
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 1.6e-113 413.3 296 70.3
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 1.6e-113 413.3 306 70.6
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.6e-113 413.3 296 70.6
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.5e-113 412.1 300 70.0
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.3e-112 409.5 298 69.1
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 3.0e-112 409.1 298 68.5
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 3.0e-112 409.1 297 69.4
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.0e-112 409.1 299 68.6
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 3.0e-112 409.1 297 68.7
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 6.6e-112 407.9 296 69.3
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 1.1e-111 407.1 297 69.0
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 1.1e-111 407.1 299 68.9
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.9e-111 406.4 300 70.0
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.9e-111 406.4 297 69.0
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.5e-111 406.0 286 73.1
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 2.5e-111 406.0 299 68.9
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.3e-111 405.6 300 69.7
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.3e-111 405.6 297 69.4
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.3e-111 405.2 297 67.3
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 5.6e-111 404.8 294 68.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 1.2e-110 403.7 299 69.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 1.2e-110 403.7 299 68.6
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 1.6e-110 403.3 297 69.0
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.6e-110 403.3 299 68.2
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 2.8e-110 402.5 296 68.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.6e-110 402.1 296 68.2
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 4.7e-110 401.7 296 69.9
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 4.7e-110 401.7 247 78.5
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 1.1e-109 400.6 273 73.6
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.8e-109 399.8 297 66.7
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 3.1e-109 399.1 300 67.7
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 4.0e-109 398.7 273 72.2
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 4.0e-109 398.7 320 64.4
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 5.2e-109 398.3 297 68.4
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 5.2e-109 398.3 297 68.4
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 5.2e-109 398.3 297 68.4
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 8.9e-109 397.5 297 66.0
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.0e-108 396.4 296 69.3
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 2.0e-108 396.4 243 80.2
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 2.6e-108 396.0 297 66.7
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.4e-108 395.6 295 68.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 7.5e-108 394.4 247 79.8
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 7.5e-108 394.4 299 68.6
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 2.2e-107 392.9 243 79.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.1e-106 390.6 296 67.6
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 1.1e-106 390.6 296 67.2
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.4e-106 390.2 309 65.4
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 1.9e-106 389.8 299 65.9
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 7.1e-106 387.9 331 62.5
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 9.2e-106 387.5 297 66.3
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.6e-105 386.7 299 66.9
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 4.6e-105 385.2 247 77.7
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.6e-105 385.2 233 79.0
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 6.0e-105 384.8 299 65.2
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.0e-104 384.0 299 66.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.7e-104 383.3 277 70.4
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 2.3e-104 382.9 283 68.9
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.0e-104 382.5 299 66.6
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 3.9e-104 382.1 300 65.3
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.5e-103 380.2 298 68.1
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.3e-103 379.0 249 74.7
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 4.3e-103 378.6 297 64.6
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 9.5e-103 377.5 228 79.8
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 2.1e-102 376.3 368 56.5
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.8e-102 375.9 225 80.4
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.6e-102 375.6 299 64.9
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 2.3e-101 372.9 347 58.8
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 4.0e-101 372.1 299 65.2
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 4.6e-97 358.6 294 65.3
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 7.8e-97 357.8 228 75.0
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 7.8e-97 357.8 284 64.8
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 1.7e-96 356.7 220 77.7
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 3.9e-96 355.5 294 62.6
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.9e-95 353.2 243 71.2
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.3e-95 351.3 298 62.4
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.2e-94 350.5 296 61.1
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.1e-94 349.7 297 60.6
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.0e-93 345.5 297 63.0
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 5.8e-92 341.7 264 67.0
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 1.7e-91 340.1 261 67.4
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 2.9e-91 339.3 243 68.3
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.4e-90 335.1 257 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.0e-88 330.9 270 61.5
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.9e-87 326.6 290 58.6
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 7.6e-84 314.7 201 77.1
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.9e-84 314.3 213 70.9
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 3.8e-83 312.4 226 65.9
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 6.4e-83 311.6 256 64.8
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.2e-81 307.4 207 73.4
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.5e-79 300.4 242 62.4
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.0e-69 265.8 230 60.0
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 8.4e-67 258.1 230 54.8
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.1e-66 257.7 287 50.5
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.3e-64 250.8 216 56.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 4.8e-62 242.3 142 82.4
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 8.2e-62 241.5 425 38.6
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.2e-59 233.4 214 54.2
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.2e-59 233.4 214 54.2
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 1.9e-58 230.3 142 78.2
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.3e-56 224.2 133 80.5
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.2e-51 206.8 234 46.6
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.9e-50 203.8 249 44.6
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.1e-49 200.3 234 45.3
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 6.1e-49 198.7 160 61.2
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.0e-48 198.0 185 53.5
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.0e-43 181.4 138 66.7
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 2.9e-43 179.9 167 57.5
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.1e-41 173.7 112 75.9
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.3e-38 162.2 97 81.4
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 7.7e-36 155.2 109 66.1
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-35 154.5 97 79.4
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 4.8e-30 136.0 81 79.0
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.5e-28 129.4 101 69.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 5.5e-26 122.5 92 68.5
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 2.1e-25 120.6 159 48.4
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.0e-24 116.7 158 44.3
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 4.1e-21 106.3 67 76.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 1.8e-16 90.9 71 62.0
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 1.2e-07 61.6 176 33.5


User provided reference genes

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