Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 1.8e-255 885.6 490 100.0
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 3.9e-226 788.1 491 90.8
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 1.4e-170 603.6 506 73.3
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 3.6e-99 366.3 590 46.3
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 4.5e-73 279.6 606 36.5
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 2.2e-72 277.3 517 40.4
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 7.9e-70 268.9 593 37.6
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.3e-69 267.3 599 35.9
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 3.7e-67 260.0 606 35.3
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 2.4e-66 257.3 614 36.3
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 2.6e-65 253.8 580 37.1
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 1.0e-64 251.9 553 36.7
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 1.9e-63 247.7 563 36.1
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 4.2e-63 246.5 605 37.0
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 4.6e-62 243.0 593 35.4
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 3.9e-61 240.0 600 37.7
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 4.3e-60 236.5 605 34.4
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 7.4e-60 235.7 585 35.6
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 1.3e-59 235.0 550 36.0
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 2.8e-59 233.8 583 36.2
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 8.2e-59 232.3 606 33.2
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 3.1e-58 230.3 601 36.3
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 1.5e-57 228.0 593 34.7
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 2.6e-57 227.3 560 36.1
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 5.9e-57 226.1 584 33.9
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 1.3e-56 224.9 572 35.8
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 1.3e-56 224.9 563 35.2
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 8.5e-56 222.2 586 34.1
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 1.9e-55 221.1 525 37.1
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 4.2e-55 219.9 497 36.2
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 1.2e-54 218.4 497 35.6
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 3.9e-53 213.4 521 36.3
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 5.1e-53 213.0 513 35.9
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 2.0e-52 211.1 603 33.7
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 2.6e-52 210.7 487 36.8
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 4.4e-52 209.9 578 34.4
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 6.3e-51 206.1 538 34.6
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 3.5e-49 200.3 525 34.7
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 4.5e-49 199.9 469 33.9
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 6.5e-48 196.1 460 35.4
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 1.4e-45 188.3 500 34.8
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 1.8e-45 188.0 554 33.2
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 3.0e-45 187.2 556 33.5
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.5e-44 184.9 590 31.5
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.3e-43 181.8 581 31.8
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 2.2e-43 181.0 391 38.6
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 8.2e-43 179.1 576 31.9
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 1.4e-42 178.3 499 32.1
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 2.0e-41 174.5 554 32.9
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 6.5e-40 169.5 554 31.9
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 1.5e-39 168.3 443 35.0
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 9.4e-39 165.6 581 30.6
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 4.7e-38 163.3 578 28.9
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 8.8e-37 159.1 467 32.3
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 3.7e-35 153.7 502 34.1
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 4.8e-35 153.3 481 33.9
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 1.8e-34 151.4 578 29.9
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 2.4e-34 151.0 541 31.6
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 1.2e-33 148.7 496 30.6
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 2.0e-33 147.9 498 31.1
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 2.2e-32 144.4 489 32.7
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 1.5e-31 141.7 434 33.2
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 1.6e-30 138.3 440 29.1
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 4.4e-28 130.2 582 28.4
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 1.4e-26 125.2 559 26.7
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 1.8e-26 124.8 559 26.7
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 1.2e-25 122.1 620 27.4
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 1.3e-24 118.6 429 31.2
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 4.7e-22 110.2 535 27.3
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 4.0e-21 107.1 325 31.1
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 5.7e-20 103.2 495 26.9
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 2.2e-19 101.3 227 39.2
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 5.4e-18 96.7 207 34.3
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 1.7e-16 91.7 524 26.5
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 9.5e-15 85.9 235 33.6
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 2.1e-14 84.7 305 28.2
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 6.2e-14 83.2 235 33.6
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 8.0e-14 82.8 143 42.7
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 7.5e-12 76.3 587 25.2
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 2.4e-10 71.2 627 24.1
CsaV3_3G004170 Cucumis sativus L. HOM05D001827 ORTHO05D001790 3.5e-09 67.4 581 21.5
MELO3C014113.2 Cucumis melo HOM05D001827 ORTHO05D001790 1.3e-08 65.5 581 22.2
Migut.M01642 Erythranthe guttata HOM05D001827 ORTHO05D001790 2.5e-07 61.2 347 25.9
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 4.3e-07 60.5 387 24.5
ClCG10G004390 Citrullus lanatus HOM05D001827 ORTHO05D001790 2.1e-06 58.2 373 23.6
Zm00001eb400500 Zea mays HOM05D007878 ORTHO05D010022 2.8e-06 57.8 262 26.7
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 3.6e-06 57.4 390 23.3


User provided reference genes

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