Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 2.5e-50 201.8 102 100.0
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 2.6e-44 181.8 103 93.2
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 2.3e-40 168.7 100 86.0
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 2.6e-39 165.2 97 84.5
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 6.5e-35 150.6 105 71.4
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 7.2e-34 147.1 103 71.8
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 1.2e-33 146.4 96 77.1
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 1.6e-33 146.0 94 76.6
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.7e-33 145.2 94 78.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.7e-33 145.2 100 74.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 2.7e-33 145.2 96 78.1
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 3.6e-33 144.8 101 73.3
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.6e-33 144.8 104 72.1
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.0e-33 143.7 96 74.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 8.0e-33 143.7 96 74.0
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 1.0e-32 143.3 102 71.6
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 1.0e-32 143.3 104 72.1
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.4e-32 142.9 102 71.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 1.8e-32 142.5 95 75.8
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 2.3e-32 142.1 102 69.6
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 3.0e-32 141.7 102 70.6
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 6.8e-32 140.6 104 70.2
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 8.8e-32 140.2 96 76.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 8.8e-32 140.2 91 76.9
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.2e-31 139.8 98 73.5
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 3.4e-31 138.3 94 72.3
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 4.4e-31 137.9 102 71.6
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 4.4e-31 137.9 98 67.3
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 5.7e-31 137.5 101 68.3
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 7.5e-31 137.1 95 73.7
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 1.3e-30 136.3 102 67.6
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.7e-30 136.0 95 69.5
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 1.7e-30 136.0 99 71.7
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 2.2e-30 135.6 74 91.9
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.2e-30 135.6 96 71.9
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 2.8e-30 135.2 97 70.1
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 2.8e-30 135.2 101 67.3
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 2.8e-30 135.2 95 71.6
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 3.7e-30 134.8 96 74.0
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 4.8e-30 134.4 95 69.5
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 8.3e-30 133.7 99 65.7
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 8.3e-30 133.7 95 70.5
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 8.3e-30 133.7 92 69.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.1e-29 133.3 97 71.1
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.1e-29 133.3 102 69.6
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-29 132.9 95 69.5
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.4e-29 132.9 98 69.4
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.4e-29 132.9 93 72.0
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 1.8e-29 132.5 94 72.3
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 2.4e-29 132.1 95 70.5
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 2.4e-29 132.1 95 69.5
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 3.1e-29 131.7 97 72.2
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 3.1e-29 131.7 94 69.1
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.1e-29 131.7 94 69.1
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 3.1e-29 131.7 102 65.7
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 1.6e-28 129.4 100 65.0
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.6e-28 129.4 97 69.1
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.0e-28 129.0 96 65.6
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 2.0e-28 129.0 94 69.1
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.7e-28 128.6 102 65.7
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 2.7e-28 128.6 92 69.6
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.7e-28 128.6 92 69.6
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.7e-28 128.6 92 69.6
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 3.5e-28 128.3 101 65.3
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 4.5e-28 127.9 99 68.7
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 4.5e-28 127.9 94 69.1
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 5.9e-28 127.5 99 63.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 5.9e-28 127.5 106 63.2
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.9e-28 127.5 92 68.5
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 7.7e-28 127.1 100 66.0
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 7.7e-28 127.1 95 67.4
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.0e-27 126.7 101 64.4
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 1.0e-27 126.7 95 70.5
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 1.3e-27 126.3 95 69.5
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 1.3e-27 126.3 99 62.6
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 1.3e-27 126.3 95 71.6
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 1.3e-27 126.3 89 69.7
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.7e-27 125.9 87 73.6
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.7e-27 125.9 96 66.7
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.7e-27 125.9 96 66.7
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 2.9e-27 125.2 99 63.6
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 5.0e-27 124.4 97 63.9
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 5.0e-27 124.4 95 68.4
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 6.5e-27 124.0 96 64.6
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 8.6e-27 123.6 94 63.8
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 1.1e-26 123.2 91 67.0
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.1e-26 123.2 96 63.5
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.5e-26 122.1 95 66.3
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.2e-26 121.3 92 66.3
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 5.5e-26 120.9 96 65.6
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 7.2e-26 120.6 96 62.5
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 2.1e-25 119.0 93 67.7
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 2.1e-25 119.0 93 64.5
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.7e-25 117.9 93 68.8
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 4.7e-25 117.9 94 60.6
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 6.1e-25 117.5 93 64.5
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 6.1e-25 117.5 93 64.5
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 1.0e-24 116.7 93 63.4
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 1.0e-24 116.7 91 63.7
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 1.0e-24 116.7 91 63.7
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 1.0e-24 116.7 93 63.4
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 1.0e-24 116.7 91 63.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.3e-24 115.5 78 70.5
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 3.0e-24 115.2 93 62.4
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 2.6e-23 112.1 96 59.4
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.7e-22 109.4 91 61.5
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 4.9e-22 107.8 75 69.3
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.3e-22 107.5 77 70.1
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.3e-22 107.5 77 70.1
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 6.3e-22 107.5 105 57.1
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 6.3e-22 107.5 77 72.7
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.8e-21 105.9 110 56.4
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 4.1e-21 104.8 94 55.3
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 4.1e-21 104.8 76 72.4
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 4.1e-21 104.8 141 50.4
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 5.4e-21 104.4 110 54.5
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 5.4e-21 104.4 94 57.4
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 9.2e-21 103.6 96 55.2
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.0e-20 102.4 94 56.4
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 5.9e-20 100.9 93 60.2
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 2.3e-19 99.0 94 54.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 5.0e-19 97.8 78 65.4
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 1.5e-18 96.3 72 65.3
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 4.3e-18 94.7 75 68.0
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 1.2e-17 93.2 89 56.2
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.6e-17 91.7 90 51.1
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 4.7e-17 91.3 96 54.2
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 1.0e-16 90.1 84 52.4
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.4e-16 89.7 91 52.7
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 2.3e-16 89.0 102 50.0
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 4.0e-16 88.2 89 55.1
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 1.2e-15 86.7 91 51.6
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 4.1e-13 78.2 87 48.3
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 2.7e-12 75.5 58 67.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 6.0e-12 74.3 67 56.7
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 6.0e-12 74.3 53 62.3
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 3.9e-11 71.6 65 56.9
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 6.6e-11 70.9 81 48.1
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 6.6e-11 70.9 59 54.2
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 8.6e-11 70.5 57 56.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 1.1e-10 70.1 66 56.1
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-09 66.6 52 57.7
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 4.0e-08 61.6 54 57.4
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 8.9e-08 60.5 82 42.7
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.3e-06 56.6 34 79.4
Pp3c7_6970 Physcomitrium patens HOM05D005070 ORTHO05D005987 1.3e-06 56.6 66 45.5
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 1.7e-06 56.2 46 58.7
AagrBONN_evm.TU.Sc2ySwM_362.1955 Anthoceros agrestis HOM05D005070 ORTHO05D005987 2.2e-06 55.8 66 42.4
MBI03_g02704_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 6.4e-06 54.3 39 64.1


User provided reference genes

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