Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 7.7e-265 916.8 522 100.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 4.5e-249 864.4 525 94.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.8e-234 815.8 525 87.6
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 4.0e-205 718.4 533 76.4
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 9.4e-138 494.6 371 78.2
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 2.6e-135 486.5 517 58.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 3.6e-129 466.1 527 56.4
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.0e-128 464.5 507 57.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-128 463.8 490 59.0
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.8e-128 463.8 507 57.2
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 4.0e-128 462.6 528 56.1
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 6.8e-128 461.8 534 55.4
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.0e-127 460.3 507 55.8
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.6e-127 459.9 507 57.4
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.4e-127 459.5 531 56.5
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 2.8e-126 456.4 541 55.1
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.1e-125 454.5 528 54.7
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 4.5e-124 449.1 539 54.5
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 1.3e-123 447.6 539 54.5
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 2.9e-123 446.4 532 54.1
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 1.9e-122 443.7 533 55.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.6e-121 440.7 536 56.7
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 2.1e-121 440.3 533 53.8
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 4.7e-121 439.1 541 53.2
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 6.8e-120 435.3 533 57.6
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.2e-119 434.5 555 52.8
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.0e-119 433.7 530 54.0
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 7.0e-117 425.2 535 53.3
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 7.0e-117 425.2 535 53.1
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.6e-116 424.1 500 54.8
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 1.6e-116 424.1 556 51.1
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 1.6e-116 424.1 527 51.6
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 2.0e-116 423.7 535 53.3
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.0e-116 423.7 531 53.1
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 4.6e-116 422.5 514 58.2
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.0e-115 419.9 552 53.6
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 3.9e-115 419.5 522 51.7
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.1e-114 417.9 529 53.5
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.9e-114 417.2 512 55.3
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.2e-113 414.5 560 50.2
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 3.6e-113 412.9 517 52.8
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.6e-113 412.9 508 50.8
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.7e-113 412.5 521 51.2
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.0e-113 411.8 507 53.3
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 8.0e-113 411.8 529 53.3
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.1e-112 411.4 528 53.2
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 4.0e-112 409.5 487 54.4
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 5.2e-112 409.1 531 51.6
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 2.0e-111 407.1 530 50.9
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 2.6e-111 406.8 526 54.0
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 5.8e-111 405.6 538 50.7
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 2.2e-110 403.7 533 49.2
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 2.9e-110 403.3 526 51.1
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 4.9e-110 402.5 524 49.8
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.1e-109 401.4 526 50.6
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 9.2e-109 398.3 530 49.6
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 6.0e-108 395.6 490 54.7
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 1.0e-107 394.8 619 47.2
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.3e-107 393.7 538 50.4
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 2.1e-105 387.1 520 46.3
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 2.8e-105 386.7 501 49.9
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 2.3e-104 383.6 521 48.4
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.5e-103 380.9 520 50.4
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 5.8e-103 379.0 524 49.6
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 7.5e-103 378.6 527 47.2
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 9.9e-103 378.3 538 51.7
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.3e-102 377.9 478 52.1
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 4.9e-102 375.9 546 46.5
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 6.4e-102 375.6 529 50.9
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.1e-101 374.8 490 48.6
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 2.4e-101 373.6 537 49.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 4.1e-101 372.9 535 48.0
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.4e-101 372.5 498 46.4
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.6e-100 369.4 527 48.6
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.0e-99 368.2 533 46.9
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.7e-99 367.5 532 48.1
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 6.6e-99 365.5 494 51.0
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 3.3e-98 363.2 528 48.5
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.3e-98 362.8 523 47.2
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 7.3e-98 362.1 535 46.2
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 8.1e-97 358.6 506 47.2
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 3.1e-96 356.7 540 45.4
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 4.0e-96 356.3 516 48.3
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.0e-95 354.0 553 48.5
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.6e-95 353.6 538 44.2
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 5.8e-95 352.4 555 44.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 7.6e-95 352.1 533 47.7
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 1.7e-94 350.9 526 43.9
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.7e-94 350.9 531 47.1
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.9e-94 350.1 541 45.3
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 3.8e-94 349.7 492 49.8
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 3.8e-94 349.7 513 45.2
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 8.4e-94 348.6 540 44.6
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.1e-93 348.2 516 45.2
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 3.2e-93 346.7 528 47.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.6e-92 344.4 530 45.3
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 1.6e-92 344.4 531 47.8
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 2.7e-92 343.6 507 44.8
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.3e-91 341.3 547 44.1
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 1.7e-91 340.9 497 45.1
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.7e-91 340.9 549 43.9
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 3.0e-91 340.1 551 43.7
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 6.6e-91 339.0 507 44.4
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.5e-90 337.0 549 43.7
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 9.6e-90 335.1 544 44.3
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 2.1e-89 334.0 544 43.8
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 2.8e-89 333.6 550 41.5
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 4.8e-89 332.8 443 57.3
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 6.2e-89 332.4 498 45.0
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 1.8e-88 330.9 544 43.6
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 5.3e-88 329.3 511 44.2
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 2.6e-87 327.0 417 56.1
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 9.9e-87 325.1 531 43.3
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 3.8e-86 323.2 537 43.2
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 4.9e-86 322.8 558 47.5
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 8.4e-86 322.0 388 54.4
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 3.2e-85 320.1 556 43.3
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 4.6e-84 316.2 556 44.2
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.3e-83 314.7 541 43.4
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 3.6e-81 306.6 537 45.1
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.8e-80 304.3 523 43.8
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.4e-80 303.9 519 41.8
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 4.0e-80 303.1 523 44.4
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 7.1e-77 292.4 377 47.7
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.3e-75 287.3 540 40.0
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.3e-75 287.3 534 40.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 8.7e-75 285.4 557 39.9
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 6.2e-73 279.3 532 40.8
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 9.0e-72 275.4 505 38.4
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.5e-71 274.6 370 50.0
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 7.9e-68 262.3 511 40.5
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 4.3e-66 256.5 534 37.8
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 6.2e-65 252.7 604 35.1
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.0e-63 247.7 364 47.3
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 8.4e-62 242.3 315 56.8
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.1e-58 231.9 457 38.1
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.5e-58 231.5 280 51.8
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.9e-53 214.5 259 56.0
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 9.4e-53 212.2 231 57.1
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 1.0e-51 208.8 416 36.8
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 2.5e-50 204.1 414 36.2
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.1e-45 188.7 392 36.5
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.3e-41 175.3 411 32.8
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.1e-40 172.2 184 57.1
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.1e-40 170.6 434 33.4
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.9e-39 166.4 408 32.6
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 8.5e-38 162.5 407 32.7
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 1.9e-37 161.4 467 32.1
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 2.1e-36 157.9 452 30.8
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 4.4e-34 150.2 271 40.6
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 1.8e-32 144.8 328 36.0
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 4.1e-32 143.7 165 53.3
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 7.7e-31 139.4 183 44.3
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 3.8e-30 137.1 536 30.8
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-28 132.1 235 40.9
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 6.1e-28 129.8 156 45.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 6.1e-28 129.8 187 44.9
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 4.0e-27 127.1 184 41.8
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.4e-26 123.6 515 27.6
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 5.7e-26 123.2 146 47.3
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.4e-24 117.9 492 27.4
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 2.9e-22 110.9 236 36.9
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 7.5e-18 96.3 74 59.5
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 1.8e-16 91.7 114 47.4
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 3.1e-16 90.9 99 52.5
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 6.1e-12 76.6 58 65.5
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 2.3e-11 74.7 77 49.4
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.0e-10 71.6 75 46.7
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.6e-10 71.2 68 54.4
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 3.4e-10 70.9 137 42.3
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 2.4e-08 64.7 96 40.6
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.4e-08 63.5 154 33.8
SHI17025 Sapria himalayana HOM05D003929 ORTHO05D004499 7.8e-07 59.7 44 65.9
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 1.3e-06 58.9 515 29.3
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 6.6e-06 56.6 105 37.1


User provided reference genes

Program Settings