Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.5e-33 143.7 70 100.0
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 1.5e-19 99.0 62 82.3
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.5e-19 99.0 62 83.9
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 2.0e-19 98.6 62 82.3
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 2.6e-19 98.2 63 81.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 4.5e-19 97.4 62 80.6
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 4.5e-19 97.4 62 80.6
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.0e-18 96.3 62 77.4
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.7e-18 95.5 62 80.6
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.2e-18 95.1 62 79.0
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 2.2e-18 95.1 65 76.9
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.2e-18 95.1 62 79.0
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.9e-18 94.7 62 77.4
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 2.9e-18 94.7 62 77.4
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 2.9e-18 94.7 62 77.4
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 3.8e-18 94.4 62 79.0
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 3.8e-18 94.4 62 77.4
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 3.8e-18 94.4 61 80.3
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 3.8e-18 94.4 64 75.0
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 5.0e-18 94.0 62 77.4
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 5.0e-18 94.0 62 79.0
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 6.5e-18 93.6 62 75.8
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 8.5e-18 93.2 62 75.8
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.5e-18 93.2 62 75.8
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 8.5e-18 93.2 62 75.8
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 8.5e-18 93.2 62 75.8
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 8.5e-18 93.2 62 77.4
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 8.5e-18 93.2 62 77.4
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 8.5e-18 93.2 62 75.8
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 8.5e-18 93.2 62 77.4
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 1.1e-17 92.8 62 74.2
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.1e-17 92.8 62 74.2
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.1e-17 92.8 62 75.8
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.1e-17 92.8 62 74.2
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 1.1e-17 92.8 62 74.2
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.1e-17 92.8 64 76.6
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 1.4e-17 92.4 62 75.8
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.4e-17 92.4 62 77.4
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.4e-17 92.4 62 77.4
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 1.4e-17 92.4 62 75.8
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 1.9e-17 92.0 62 74.2
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.9e-17 92.0 62 75.8
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.9e-17 92.0 62 72.6
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.9e-17 92.0 64 76.6
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 1.9e-17 92.0 62 75.8
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.5e-17 91.7 62 77.4
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.5e-17 91.7 62 75.8
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 2.5e-17 91.7 62 75.8
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 3.2e-17 91.3 62 72.6
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 3.2e-17 91.3 62 75.8
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 4.2e-17 90.9 62 72.6
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 4.2e-17 90.9 62 74.2
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 4.2e-17 90.9 62 74.2
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 5.5e-17 90.5 62 72.6
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 7.2e-17 90.1 62 75.8
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 9.4e-17 89.7 62 71.0
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 9.4e-17 89.7 63 74.6
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 9.4e-17 89.7 62 72.6
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.4e-17 89.7 62 72.6
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.4e-17 89.7 62 72.6
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.2e-16 89.4 62 77.4
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 1.2e-16 89.4 62 72.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.2e-16 89.4 62 74.2
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.2e-16 89.4 62 72.6
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.2e-16 89.4 62 72.6
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.6e-16 89.0 62 72.6
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 1.6e-16 89.0 62 72.6
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.6e-16 89.0 62 72.6
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 2.1e-16 88.6 62 72.6
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.1e-16 88.6 59 78.0
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 2.1e-16 88.6 63 74.6
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 2.7e-16 88.2 61 75.4
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 2.7e-16 88.2 62 74.2
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 2.7e-16 88.2 61 72.1
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-16 87.8 62 69.4
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 3.6e-16 87.8 62 69.4
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.6e-16 87.8 61 73.8
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 3.6e-16 87.8 62 69.4
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 4.7e-16 87.4 62 71.0
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 6.1e-16 87.0 63 71.4
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 8.0e-16 86.7 60 76.7
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 8.0e-16 86.7 55 80.0
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 1.0e-15 86.3 62 75.8
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 1.0e-15 86.3 62 71.0
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.8e-15 85.5 62 67.7
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.8e-15 85.5 63 71.4
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 1.8e-15 85.5 62 72.6
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.8e-15 85.5 61 68.9
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 2.3e-15 85.1 65 70.8
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 3.0e-15 84.7 62 69.4
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 3.0e-15 84.7 62 71.0
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 3.0e-15 84.7 65 69.2
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 3.0e-15 84.7 58 72.4
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 3.0e-15 84.7 62 72.6
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.0e-15 84.7 63 66.7
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 3.9e-15 84.3 60 70.0
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 5.2e-15 84.0 63 71.4
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 6.7e-15 83.6 62 71.0
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 6.7e-15 83.6 65 66.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 6.7e-15 83.6 63 69.8
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.5e-14 82.4 63 65.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.3e-14 81.3 62 72.6
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 3.3e-14 81.3 50 82.0
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 5.7e-14 80.5 62 71.0
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 5.7e-14 80.5 58 70.7
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 5.7e-14 80.5 55 72.7
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 1.7e-13 79.0 57 66.7
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 3.7e-13 77.8 67 65.7
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 6.3e-13 77.0 62 64.5
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 6.3e-13 77.0 58 67.2
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 4.1e-12 74.3 48 77.1
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 4.1e-12 74.3 39 89.7
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.3e-12 73.9 59 67.8
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 1.0e-10 69.7 51 70.6
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.9e-09 65.5 51 68.6
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.2e-08 62.8 53 69.8
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.2e-06 56.2 29 86.2
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.5e-06 55.8 53 52.8


User provided reference genes

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