Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 6.2e-77 290.8 156 100.0
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 8.9e-76 287.0 156 98.7
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 1.6e-61 239.6 153 84.3
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 2.0e-43 179.5 104 90.4
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 3.4e-43 178.7 156 66.0
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.4e-43 178.7 166 65.1
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 3.8e-42 175.3 166 66.9
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 1.2e-40 170.2 157 63.7
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 4.6e-40 168.3 159 64.2
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 6.0e-40 167.9 160 60.6
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.3e-39 166.8 162 63.0
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.8e-39 166.4 159 62.3
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 8.7e-39 164.1 158 61.4
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.1e-38 163.7 161 62.1
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.1e-38 163.7 160 61.2
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.1e-38 163.7 160 61.2
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 1.9e-38 162.9 159 59.1
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.3e-38 161.8 156 60.9
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 9.7e-38 160.6 157 61.8
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 9.7e-38 160.6 162 60.5
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 9.7e-38 160.6 154 61.0
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.3e-37 160.2 154 60.4
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.8e-37 159.1 156 64.1
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.8e-37 158.3 154 59.7
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.1e-36 157.1 160 62.5
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.1e-36 157.1 156 62.8
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.4e-36 156.8 151 63.6
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.4e-36 156.8 153 62.7
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.4e-36 156.8 152 60.5
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.8e-36 156.4 158 59.5
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 1.8e-36 156.4 160 58.8
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 6.9e-36 154.5 152 63.8
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 9.0e-36 154.1 154 58.4
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.2e-35 153.7 164 59.1
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.5e-35 153.3 164 56.7
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 2.0e-35 152.9 154 61.7
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 2.0e-35 152.9 159 57.9
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 2.0e-35 152.9 146 62.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.6e-35 152.5 161 60.9
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.9e-35 151.4 149 61.7
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 7.7e-35 151.0 153 58.8
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 2.9e-34 149.1 161 59.0
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.9e-34 149.1 146 58.9
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 2.9e-34 149.1 166 59.0
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.9e-34 149.1 150 60.7
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 6.5e-34 147.9 165 61.2
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 6.5e-34 147.9 156 59.0
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 8.5e-34 147.5 157 56.1
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-33 147.1 149 62.4
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 1.4e-33 146.7 157 58.0
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.4e-33 146.7 160 55.6
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.4e-33 146.7 157 55.4
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.9e-33 146.4 156 55.8
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 2.5e-33 146.0 152 57.9
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 2.5e-33 146.0 158 56.3
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 2.5e-33 146.0 152 62.5
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 9.4e-33 144.1 160 55.6
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.2e-32 143.7 153 59.5
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.2e-32 143.7 162 58.6
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.6e-32 143.3 154 59.1
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.6e-32 143.3 155 56.1
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.6e-32 143.3 148 62.2
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 4.6e-32 141.7 146 58.9
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 7.9e-32 141.0 129 65.1
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 3.0e-31 139.0 160 55.6
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.9e-31 138.7 159 56.0
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.1e-30 137.1 142 57.7
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.5e-30 136.7 179 54.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.5e-30 136.7 191 48.7
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 3.3e-30 135.6 142 56.3
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 3.3e-30 135.6 148 56.8
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 4.3e-30 135.2 160 53.8
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 7.4e-30 134.4 140 62.9
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 9.7e-30 134.0 142 57.0
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 9.7e-30 134.0 142 57.0
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.7e-29 133.3 143 60.1
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 2.2e-29 132.9 156 55.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 2.2e-29 132.9 152 55.9
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 2.8e-29 132.5 157 53.5
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 2.8e-29 132.5 149 55.7
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 4.8e-29 131.7 146 54.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.8e-29 131.7 148 56.8
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 6.3e-29 131.3 159 54.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.0e-27 126.3 155 52.3
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.0e-27 126.3 146 56.2
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 2.0e-27 126.3 153 52.9
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.6e-27 125.9 142 54.9
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.4e-27 125.6 142 54.2
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.9e-27 124.8 142 54.2
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.9e-27 124.8 126 60.3
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 7.7e-27 124.4 99 69.7
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.0e-26 124.0 143 54.5
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.0e-26 124.0 162 51.9
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 2.2e-26 122.9 142 53.5
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 6.5e-26 121.3 134 59.7
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 6.5e-26 121.3 134 59.7
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 1.9e-25 119.8 169 49.7
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 5.5e-25 118.2 136 56.6
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 7.2e-25 117.9 146 54.1
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.4e-25 117.5 140 59.3
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.2e-24 117.1 161 47.2
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 2.1e-24 116.3 155 52.9
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 2.7e-24 115.9 150 51.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 6.1e-24 114.8 161 47.2
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 7.9e-24 114.4 131 51.9
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 7.9e-24 114.4 161 50.9
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 8.8e-23 110.9 147 46.9
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.1e-22 110.5 155 49.0
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-22 109.4 137 54.0
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.7e-21 105.5 169 49.1
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.1e-20 104.0 162 44.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.8e-20 103.2 153 47.7
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 2.4e-20 102.8 114 61.4
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.5e-19 99.0 148 46.6
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.3e-18 97.1 115 54.8
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.3e-18 97.1 94 60.6
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.2e-18 96.3 148 49.3
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.9e-18 95.9 161 44.7
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 5.0e-18 95.1 64 73.4
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 5.0e-18 95.1 137 46.7
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-17 92.8 97 58.8
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 5.5e-17 91.7 153 42.5
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 7.2e-17 91.3 157 44.6
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 1.6e-16 90.1 169 40.8
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 3.6e-16 89.0 97 54.6
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 3.9e-15 85.5 84 59.5
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 8.8e-15 84.3 110 50.9
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 4.4e-14 82.0 110 50.0
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 1.4e-12 77.0 107 46.7
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 2.6e-11 72.8 145 41.4
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 5.9e-11 71.6 150 37.3
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.0e-10 70.9 56 67.9
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 2.9e-10 69.3 89 55.1
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.8e-10 68.9 69 56.5
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 8.5e-10 67.8 56 66.1
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 8.5e-10 67.8 56 66.1
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-09 66.2 56 64.3
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 3.2e-09 65.9 83 48.2
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-09 65.5 54 66.7
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 8.0e-08 61.2 77 50.6
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 4.0e-07 58.9 79 55.7
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 6.7e-07 58.2 39 74.4
Cre02.g097334 Chlamydomonas reinhardtii HOM05D004927 ORTHO05D005798 5.7e-06 55.1 154 32.5
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 5.7e-06 55.1 96 42.7


User provided reference genes

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