Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G000500 Cucumis sativus L. HOM05D005391 ORTHO05D006694 9.6e-91 337.0 199 100.0
MELO3C026202.2 Cucumis melo HOM05D005391 ORTHO05D006694 5.3e-89 331.3 199 96.0
Sed0002904 Sechium edule HOM05D005391 ORTHO05D006694 1.5e-80 303.1 199 82.9
ClCG06G017970 Citrullus lanatus HOM05D005391 ORTHO05D006694 1.4e-78 296.6 248 74.2
CiPaw.12G044000 Carya illinoinensis HOM05D005391 ORTHO05D006694 4.7e-53 211.8 204 59.8
MD15G1005900 Malus domestica HOM05D005391 ORTHO05D006694 6.7e-52 208.0 204 61.3
Manes.14G050400 Manihot esculenta HOM05D005391 ORTHO05D006694 6.7e-52 208.0 208 62.0
CiPaw.11G006200 Carya illinoinensis HOM05D005391 ORTHO05D006694 1.1e-51 207.2 202 59.9
MD08G1006700 Malus domestica HOM05D005391 ORTHO05D006694 1.1e-51 207.2 204 61.8
Dinv23158 Davidia involucrata HOM05D005391 ORTHO05D006694 7.4e-51 204.5 201 63.2
Prupe.1G358600 Prunus persica HOM05D005391 ORTHO05D006694 1.7e-50 203.4 202 61.4
Thecc.03G130500 Theobroma cacao HOM05D005391 ORTHO05D006694 1.7e-50 203.4 191 63.4
TWI23G0649 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 4.1e-49 198.7 201 57.2
Gorai.001G058300 Gossypium raimondii HOM05D005391 ORTHO05D006694 7.0e-49 198.0 190 60.5
COL.COLO4_28143 Corchorus olitorius HOM05D005391 ORTHO05D006694 1.6e-48 196.8 188 60.6
Gohir.D07G055100 Gossypium hirsutum HOM05D005391 ORTHO05D006694 2.0e-48 196.4 190 60.0
vmacro16727 Vaccinium macrocarpon HOM05D005391 ORTHO05D006694 4.5e-48 195.3 202 57.9
Gohir.A07G050600 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.0e-47 194.1 187 58.3
TPR.G14215 Trifolium pratense HOM05D005391 ORTHO05D006694 2.2e-47 193.0 203 58.1
TWI14G1436 Tripterygium wilfordii HOM05D005391 ORTHO05D006694 2.9e-47 192.6 191 61.3
Actinidia36818 Actinidia chinensis HOM05D005391 ORTHO05D006694 5.0e-47 191.8 201 57.7
FAN15G0439 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.5e-46 190.3 200 59.5
Cpa.g.sc13.100 Carica papaya HOM05D005391 ORTHO05D006694 1.9e-46 189.9 202 60.9
CANSAT80G1472 Cannabis sativa HOM05D005391 ORTHO05D006694 1.2e-45 187.2 198 55.1
FAN20G0870 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.2e-45 187.2 200 58.5
Sabra12G0072400 Salix brachista HOM05D005391 ORTHO05D006694 1.2e-45 187.2 187 65.8
FvH4_2g37750 Fragaria vesca HOM05D005391 ORTHO05D006694 1.6e-45 186.8 200 57.5
FAN27G0224 Fragaria x ananassa HOM05D005391 ORTHO05D006694 2.1e-45 186.4 200 58.5
CSS0003205 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.7e-45 185.3 199 59.8
CSS0033680 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 4.7e-45 185.3 199 59.8
RcHm_v2.0_Chr6g0303761 Rosa chinensis HOM05D005391 ORTHO05D006694 8.0e-45 184.5 203 63.1
CSS0043065 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.0e-44 184.1 201 56.2
Potri.015G097800 Populus trichocarpa HOM05D005391 ORTHO05D006694 2.3e-44 183.0 191 54.5
Ca_16053_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 4.0e-44 182.2 203 55.2
Nn4g22289 Nelumbo nucifera HOM05D005391 ORTHO05D006694 4.0e-44 182.2 189 55.0
Nitab4.5_0000264g0120 Nicotiana tabacum HOM05D005391 ORTHO05D006694 6.7e-44 181.4 200 57.0
TAR629G0488 Trochodendron aralioides HOM05D005391 ORTHO05D006694 6.7e-44 181.4 199 55.3
Medtr3g099130 Medicago truncatula HOM05D005391 ORTHO05D006694 1.5e-43 180.3 199 53.8
FAN26G2573 Fragaria x ananassa HOM05D005391 ORTHO05D006694 3.3e-43 179.1 198 56.6
Peaxi162Scf00045g01932 Petunia axillaris HOM05D005391 ORTHO05D006694 4.4e-43 178.7 201 53.2
Potri.012G099200 Populus trichocarpa HOM05D005391 ORTHO05D006694 5.7e-43 178.3 187 57.8
TAR371G0831 Trochodendron aralioides HOM05D005391 ORTHO05D006694 7.5e-43 177.9 189 55.6
Haze_07152 Corylus avellana HOM05D005391 ORTHO05D006694 9.7e-43 177.6 201 61.7
Rhsim12G0176000 Rhododendron simsii HOM05D005391 ORTHO05D006694 9.7e-43 177.6 196 55.1
Duzib205G0229 Durio zibethinus HOM05D005391 ORTHO05D006694 1.3e-42 177.2 211 55.9
Lsat_1_v5_gn_4_81240 Lactuca sativa HOM05D005391 ORTHO05D006694 3.7e-42 175.6 199 54.3
Lj1g0005006 Lotus japonicus HOM05D005391 ORTHO05D006694 6.3e-42 174.9 198 54.0
Cfa018784 Carpinus fangiana HOM05D005391 ORTHO05D006694 8.2e-42 174.5 201 61.2
Ciclev10032864m.g Citrus clementina HOM05D005391 ORTHO05D006694 8.2e-42 174.5 203 53.7
PGSC0003DMG400026284 Solanum tuberosum HOM05D005391 ORTHO05D006694 8.2e-42 174.5 203 55.2
DCAR_016386 Daucus carota HOM05D005391 ORTHO05D006694 1.1e-41 174.1 191 56.0
MBI07_g28244_MAGBIO Magnolia biondii HOM05D005391 ORTHO05D006694 2.4e-41 172.9 188 51.6
PSO478G3696 Papaver somniferum HOM05D005391 ORTHO05D006694 4.1e-41 172.2 190 54.2
Cc08_g07550 Coffea canephora HOM05D005391 ORTHO05D006694 5.3e-41 171.8 212 55.2
Nn3g16438 Nelumbo nucifera HOM05D005391 ORTHO05D006694 5.3e-41 171.8 201 51.2
Glyma.04G196600 Glycine max HOM05D005391 ORTHO05D006694 7.0e-41 171.4 199 59.8
PSO017G3900 Papaver somniferum HOM05D005391 ORTHO05D006694 7.0e-41 171.4 190 53.7
Glyma.06G169200 Glycine max HOM05D005391 ORTHO05D006694 1.6e-40 170.2 187 63.1
Lalb_Chr23g0273681 Lupinus albus HOM05D005391 ORTHO05D006694 1.6e-40 170.2 200 59.0
Atru.chr6.1808 Acer truncatum HOM05D005391 ORTHO05D006694 2.7e-40 169.5 196 51.5
AL8G40540 Arabidopsis lyrata HOM05D005391 ORTHO05D006694 5.9e-40 168.3 189 57.7
Oeu009657.1 Olea europaea HOM05D005391 ORTHO05D006694 7.7e-40 167.9 204 53.4
BcaB04g19920 Brassica carinata HOM05D005391 ORTHO05D006694 1.0e-39 167.5 191 52.4
Psat5g051960 Pisum sativum HOM05D005391 ORTHO05D006694 1.3e-39 167.2 201 50.2
THA.LOC104798944 Tarenaya hassleriana HOM05D005391 ORTHO05D006694 2.2e-39 166.4 206 53.9
Sabra15G0118500 Salix brachista HOM05D005391 ORTHO05D006694 2.9e-39 166.0 219 49.8
C03p62960 Brassica napus HOM05D005391 ORTHO05D006694 3.8e-39 165.6 189 55.0
BolC3t18550H Brassica oleracea HOM05D005391 ORTHO05D006694 3.8e-39 165.6 189 55.0
A06p30110 Brassica napus HOM05D005391 ORTHO05D006694 8.5e-39 164.5 186 56.5
BraA06t25962Z Brassica rapa HOM05D005391 ORTHO05D006694 8.5e-39 164.5 186 56.5
Lj5A95T81 Lonicera japonica HOM05D005391 ORTHO05D006694 1.1e-38 164.1 215 52.1
CARHR277330 Cardamine hirsuta HOM05D005391 ORTHO05D006694 1.9e-38 163.3 186 54.3
ECA232G1626 Erigeron canadensis HOM05D005391 ORTHO05D006694 1.9e-38 163.3 204 52.5
Migut.E01449 Erythranthe guttata HOM05D005391 ORTHO05D006694 1.9e-38 163.3 216 50.9
Sp2g26560 Schrenkiella parvula HOM05D005391 ORTHO05D006694 3.2e-38 162.5 187 51.9
unitig_32.g10935 Utricularia gibba HOM05D005391 ORTHO05D006694 3.2e-38 162.5 221 49.3
Aa31LG1G18560 Aethionema arabicum HOM05D005391 ORTHO05D006694 4.2e-38 162.2 210 51.4
AUR62003784 Chenopodium quinoa HOM05D005391 ORTHO05D006694 5.5e-38 161.8 186 51.6
MSTRG.25825 Avicennia marina HOM05D005391 ORTHO05D006694 7.2e-38 161.4 220 50.0
arahy.Tifrunner.gnm1.ann1.S11VKX Arachis hypogaea HOM05D005391 ORTHO05D006694 9.4e-38 161.0 199 55.3
Thhalv10004987m.g Eutrema salsugineum HOM05D005391 ORTHO05D006694 1.2e-37 160.6 186 53.8
AUR62002017 Chenopodium quinoa HOM05D005391 ORTHO05D006694 1.6e-37 160.2 186 51.1
SGA_v2.0_scaffold169G38603 Striga asiatica HOM05D005391 ORTHO05D006694 2.1e-37 159.8 210 47.1
Phvul.009G165600 Phaseolus vulgaris HOM05D005391 ORTHO05D006694 2.7e-37 159.5 200 53.0
Solyc08g006670.3 Solanum lycopersicum HOM05D005391 ORTHO05D006694 3.6e-37 159.1 201 52.7
Sopen08g002620 Solanum pennellii HOM05D005391 ORTHO05D006694 4.7e-37 158.7 201 52.2
GSVIVG01008565001 Vitis vinifera HOM05D005391 ORTHO05D006694 6.1e-37 158.3 189 52.4
A09p08280 Brassica napus HOM05D005391 ORTHO05D006694 1.4e-36 157.1 189 51.3
Hund08624 Selenicereus undatus HOM05D005391 ORTHO05D006694 1.8e-36 156.8 197 47.2
BcaB02g09758 Brassica carinata HOM05D005391 ORTHO05D006694 3.0e-36 156.0 188 55.3
Carub.0008s2418 Capsella rubella HOM05D005391 ORTHO05D006694 3.0e-36 156.0 189 56.1
BraA09t36478Z Brassica rapa HOM05D005391 ORTHO05D006694 6.8e-36 154.8 188 51.6
Ah.03g143420 Amaranthus hybridus HOM05D005391 ORTHO05D006694 8.8e-36 154.5 187 49.2
arahy.Tifrunner.gnm1.ann1.3A01UJ Arachis hypogaea HOM05D005391 ORTHO05D006694 1.5e-35 153.7 207 53.1
QL10p002677 Quercus lobata HOM05D005391 ORTHO05D006694 2.6e-35 152.9 198 52.5
EL10Ac6g15093 Beta vulgaris HOM05D005391 ORTHO05D006694 7.5e-35 151.4 198 48.0
AT5G63480 Arabidopsis thaliana HOM05D005391 ORTHO05D006694 2.8e-34 149.4 186 53.8
BolC9t53848H Brassica oleracea HOM05D005391 ORTHO05D006694 8.3e-34 147.9 184 54.3
SalBow8G3527 Salvia bowleyana HOM05D005391 ORTHO05D006694 7.0e-33 144.8 215 47.0
Aqoxy3G01572 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 2.0e-32 143.3 189 47.6
Actinidia08882 Actinidia chinensis HOM05D005391 ORTHO05D006694 3.5e-32 142.5 168 54.8
arahy.Tifrunner.gnm1.ann1.CP8X4X Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-31 140.6 241 45.6
arahy.Tifrunner.gnm1.ann1.HT4698 Arachis hypogaea HOM05D005391 ORTHO05D006694 1.3e-31 140.6 241 45.6
BcaC04g23332 Brassica carinata HOM05D005391 ORTHO05D006694 1.3e-31 140.6 184 53.3
C09p09360 Brassica napus HOM05D005391 ORTHO05D006694 1.3e-31 140.6 184 53.3
Zm00001eb421130 Zea mays HOM05D005391 ORTHO05D006694 3.2e-30 136.0 184 47.3
CDE04G2377 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 4.2e-30 135.6 184 45.7
ATR0171G017 Amborella trichopoda HOM05D005391 ORTHO05D006694 1.2e-29 134.0 189 44.4
CDE10G0912 Ceratophyllum demersum HOM05D005391 ORTHO05D006694 2.8e-29 132.9 185 44.9
FAN23G2258 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.2e-27 127.5 167 52.1
Aqoxy3G00618 Aquilegia oxysepala HOM05D005391 ORTHO05D006694 1.5e-27 127.1 192 47.9
HanXRQChr09g0273301 Helianthus annuus HOM05D005391 ORTHO05D006694 3.4e-27 125.9 160 47.5
Nitab4.5_0001362g0010 Nicotiana tabacum HOM05D005391 ORTHO05D006694 7.5e-27 124.8 210 44.3
FAN23G0903 Fragaria x ananassa HOM05D005391 ORTHO05D006694 1.3e-23 114.0 196 44.9
SEGI_01116 Sequoiadendron giganteum HOM05D005391 ORTHO05D006694 2.3e-23 113.2 195 41.5
Ca_01190_v3 Cicer arietinum L. HOM05D005391 ORTHO05D006694 2.9e-23 112.8 112 53.6
Ah.07g204620 Amaranthus hybridus HOM05D005391 ORTHO05D006694 1.1e-22 110.9 154 47.4
CSS0010891 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 1.5e-22 110.5 135 53.3
HPP92_023119 Vanilla planifolia HOM05D005391 ORTHO05D006694 5.6e-22 108.6 188 44.1
Sc04g0000550 Simmondsia chinensis HOM05D005391 ORTHO05D006694 4.4e-19 99.0 147 45.6
VMungo1309G0665 Vigna mungo HOM05D005391 ORTHO05D006694 1.7e-18 97.1 135 49.6
Mapoly0007s0225 Marchantia polymorpha HOM05D005391 ORTHO05D006694 8.3e-18 94.7 186 36.0
Pp3c7_3280 Physcomitrium patens HOM05D005391 ORTHO05D006694 8.3e-18 94.7 195 35.4
Oeu040668.1 Olea europaea HOM05D005391 ORTHO05D006694 2.4e-17 93.2 170 39.4
DCAR_021623 Daucus carota HOM05D005391 ORTHO05D006694 4.1e-17 92.4 187 34.8
Gohir.1Z049409 Gossypium hirsutum HOM05D005391 ORTHO05D006694 1.2e-16 90.9 116 48.3
CSS0049043 Camellia sinensis var. sinensis HOM05D005391 ORTHO05D006694 2.1e-13 80.1 67 64.2
AagrBONN_evm.TU.Sc2ySwM_369.268 Anthoceros agrestis HOM05D005391 ORTHO05D006694 2.8e-13 79.7 197 31.5
Os04g0388601 Oryza sativa ssp. japonica HOM05D005391 ORTHO05D006694 8.0e-13 78.2 167 43.7
SMO364G0653 Selaginella moellendorffii HOM05D005391 ORTHO05D006694 2.3e-12 76.6 178 32.0
Zm00001eb085410 Zea mays HOM05D005391 ORTHO05D006694 5.4e-09 65.5 123 40.7


User provided reference genes

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