Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 2.8e-94 348.6 177 100.0
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.2e-84 316.6 177 89.8
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 6.1e-81 304.3 177 85.3
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.0e-80 303.5 241 69.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 5.2e-64 248.1 163 76.1
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.4e-63 245.4 171 72.5
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 1.4e-61 240.0 171 71.3
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 2.4e-61 239.2 173 71.1
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 3.2e-61 238.8 161 74.5
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 5.4e-61 238.0 171 71.3
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 5.4e-61 238.0 162 74.1
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 9.2e-61 237.3 158 74.7
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 4.6e-60 235.0 171 70.8
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.7e-59 233.0 161 74.5
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.7e-59 233.0 155 74.8
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 2.3e-59 232.6 164 75.0
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 3.9e-59 231.9 173 68.2
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 5.1e-59 231.5 167 73.7
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 5.1e-59 231.5 172 70.3
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 8.6e-59 230.7 165 74.5
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.1e-58 230.3 159 70.4
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.1e-58 230.3 159 70.4
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.1e-58 230.3 172 68.0
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.1e-58 230.3 158 75.3
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.5e-58 229.9 164 71.3
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.9e-58 229.6 176 68.8
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 2.5e-58 229.2 170 70.6
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 4.3e-58 228.4 174 68.4
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 7.3e-58 227.6 161 70.2
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 7.3e-58 227.6 159 69.8
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 7.3e-58 227.6 171 67.3
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 9.5e-58 227.3 165 68.5
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 1.6e-57 226.5 167 65.9
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 1.6e-57 226.5 167 65.9
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.6e-57 226.5 173 65.3
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 2.1e-57 226.1 168 67.3
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 3.6e-57 225.3 160 70.0
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 4.7e-57 224.9 168 70.8
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 8.1e-57 224.2 169 68.0
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 8.1e-57 224.2 170 70.6
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.1e-56 223.8 162 68.5
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.1e-56 223.8 170 71.2
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.1e-56 223.8 170 71.2
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.1e-56 223.8 173 67.1
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.8e-56 223.0 173 64.7
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.1e-56 222.2 170 70.0
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 3.1e-56 222.2 161 69.6
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 8.9e-56 220.7 173 64.7
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.2e-55 220.3 164 67.1
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 2.6e-55 219.2 158 70.9
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.4e-55 218.8 162 66.7
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 4.4e-55 218.4 173 64.7
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 9.9e-55 217.2 159 70.4
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.7e-54 216.5 161 65.8
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.7e-54 216.5 161 65.8
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 2.2e-54 216.1 167 64.7
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 2.9e-54 215.7 162 66.7
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 3.7e-54 215.3 161 67.1
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 3.7e-54 215.3 165 63.6
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 3.7e-54 215.3 161 64.0
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 3.7e-54 215.3 153 68.0
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 6.4e-54 214.5 168 62.5
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 6.4e-54 214.5 158 69.6
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 6.4e-54 214.5 159 67.3
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 8.3e-54 214.2 164 65.2
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 8.3e-54 214.2 153 67.3
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 8.3e-54 214.2 161 64.6
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.1e-53 213.8 167 65.9
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.1e-53 213.8 161 68.3
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 1.4e-53 213.4 166 62.7
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.4e-53 212.6 153 68.0
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.4e-53 212.6 173 63.0
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.4e-53 212.6 167 63.5
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 5.4e-53 211.5 173 62.4
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 7.1e-53 211.1 158 66.5
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 7.1e-53 211.1 154 66.2
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 7.1e-53 211.1 167 62.9
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 9.2e-53 210.7 154 66.2
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 9.2e-53 210.7 154 66.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.2e-52 210.3 165 64.8
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.1e-52 209.5 161 65.8
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 3.5e-52 208.8 153 66.7
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 3.5e-52 208.8 153 66.0
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 7.8e-52 207.6 167 64.1
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.0e-51 207.2 159 64.2
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.0e-51 207.2 147 65.3
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 3.0e-51 205.7 162 64.8
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 3.0e-51 205.7 169 62.7
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 1.1e-50 203.8 140 70.7
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.9e-50 203.0 171 63.2
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 7.3e-50 201.1 169 60.4
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.6e-49 199.9 200 57.0
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 1.1e-48 197.2 168 61.3
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 1.1e-48 197.2 165 59.4
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.2e-47 193.7 147 70.1
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 2.0e-47 193.0 134 71.6
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 3.4e-47 192.2 135 72.6
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 4.4e-47 191.8 131 72.5
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 4.6e-44 181.8 147 58.5
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.7e-43 179.9 146 64.4
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 3.0e-43 179.1 172 58.1
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 3.0e-43 179.1 148 64.9
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 5.1e-43 178.3 112 77.7
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 5.1e-43 178.3 137 65.7
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 8.7e-43 177.6 132 71.2
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.1e-42 177.2 147 58.5
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 5.6e-42 174.9 134 64.9
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 1.8e-40 169.9 134 67.9
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 3.2e-37 159.1 106 75.5
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 9.3e-37 157.5 134 59.0
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.7e-35 153.3 135 63.7
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 3.0e-35 152.5 89 79.8
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.1e-33 146.4 119 64.7
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 7.6e-31 137.9 111 65.8
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 9.9e-31 137.5 78 82.1
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 7.9e-28 127.9 134 59.7
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.3e-27 127.1 121 48.8
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.5e-26 122.9 163 41.1
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 7.4e-26 121.3 116 58.6
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.4e-24 116.3 80 70.0
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 5.3e-24 115.2 112 55.4
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 4.5e-23 112.1 66 75.8
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 5.5e-21 105.1 55 87.3
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 9.6e-18 94.4 83 60.2
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.3e-17 94.0 51 88.2
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 3.7e-17 92.4 53 79.2
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.2e-15 87.4 59 69.5
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 1.9e-13 80.1 53 71.7
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.0e-11 74.3 73 58.9
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.0e-11 74.3 73 58.9
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 7.4e-10 68.2 85 31.8


User provided reference genes

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