Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre26.g756847 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D028745 6.7e-233 810.8 591 100.0
Cre10.g431350 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 2.6e-27 127.9 175 40.6
Cre10.g462000 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D028745 2.3e-23 114.8 154 40.3
CBR_g45217 Chara braunii HOM05D004930 ORTHO05D028745 1.3e-21 109.0 163 38.7
Cre04.g214700 Chlamydomonas reinhardtii HOM05D039848 ORTHO05D142987 2.7e-16 91.3 156 35.3
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 1.4e-12 79.0 158 31.6
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 1.2e-11 75.9 181 31.5
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 5.9e-11 73.6 175 29.7
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 2.2e-10 71.6 195 34.4
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 2.9e-10 71.2 193 31.1
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 6.5e-10 70.1 193 31.1
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 6.5e-10 70.1 206 33.0
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 6.5e-10 70.1 204 32.4
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 8.5e-10 69.7 196 34.2
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 1.1e-09 69.3 204 32.4
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 1.9e-09 68.6 195 33.8
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 3.2e-09 67.8 195 31.3
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 4.2e-09 67.4 195 33.8
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 4.2e-09 67.4 194 32.0
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 5.5e-09 67.0 195 33.8
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 7.2e-09 66.6 195 32.8
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 7.2e-09 66.6 195 32.8
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 9.4e-09 66.2 159 33.3
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 9.4e-09 66.2 186 32.3
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 9.4e-09 66.2 195 33.8
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 9.4e-09 66.2 193 29.5
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 1.2e-08 65.9 195 33.8
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 1.2e-08 65.9 206 31.6
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.2e-08 65.9 206 31.6
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 1.2e-08 65.9 185 34.1
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.2e-08 65.9 184 30.4
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.6e-08 65.5 206 31.6
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 1.6e-08 65.5 191 30.9
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 2.1e-08 65.1 170 31.8
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.1e-08 65.1 185 33.0
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 3.6e-08 64.3 206 31.1
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.6e-08 64.3 193 31.1
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 3.6e-08 64.3 193 31.1
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 3.6e-08 64.3 193 31.1
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 4.7e-08 63.9 193 30.6
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 4.7e-08 63.9 193 29.5
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 4.7e-08 63.9 193 31.1
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 4.7e-08 63.9 172 32.6
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 4.7e-08 63.9 195 32.8
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 6.1e-08 63.5 193 30.6
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 6.1e-08 63.5 185 33.0
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 6.1e-08 63.5 171 30.4
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 7.9e-08 63.2 186 30.6
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 7.9e-08 63.2 190 33.7
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 1.0e-07 62.8 197 32.5
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.0e-07 62.8 193 30.1
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 1.0e-07 62.8 193 30.1
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 1.4e-07 62.4 204 30.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 2.3e-07 61.6 165 32.1
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 2.3e-07 61.6 195 30.3
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 3.0e-07 61.2 161 32.3
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 3.0e-07 61.2 206 31.6
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 3.9e-07 60.8 191 28.8
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.9e-07 60.8 195 30.8
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 3.9e-07 60.8 197 32.0
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 3.9e-07 60.8 206 31.1
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 3.9e-07 60.8 185 32.4
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 5.2e-07 60.5 193 29.5
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 6.7e-07 60.1 197 32.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.7e-07 60.1 212 30.2
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.7e-07 60.1 212 30.2
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 6.7e-07 60.1 173 30.6
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 8.8e-07 59.7 178 29.8
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.1e-06 59.3 174 32.2
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 1.5e-06 58.9 173 30.6
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 1.5e-06 58.9 172 30.8
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.5e-06 58.9 174 31.6
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 2.0e-06 58.5 186 30.6
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 2.0e-06 58.5 186 30.6
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 2.0e-06 58.5 161 31.7
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 2.6e-06 58.2 195 29.2
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 2.6e-06 58.2 195 29.2
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 3.3e-06 57.8 195 28.7
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 4.4e-06 57.4 183 25.7
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 7.4e-06 56.6 174 31.6
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 9.7e-06 56.2 159 28.9


User provided reference genes

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