Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre17.g726350 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 6.5e-290 1000.3 644 100.0
SMO340G0297 Selaginella moellendorffii HOM05D006393 ORTHO05D008088 3.1e-58 230.7 319 43.3
Mapoly0052s0018 Marchantia polymorpha HOM05D006393 ORTHO05D008088 4.2e-55 220.3 319 43.3
Os01g0507300 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 4.2e-55 220.3 333 41.7
Zm00001eb106640 Zea mays HOM05D006393 ORTHO05D008088 4.7e-54 216.9 330 40.9
SEGI_37175 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 1.2e-52 212.2 331 41.4
COL.COLO4_34948 Corchorus olitorius HOM05D006393 ORTHO05D008088 2.2e-51 208.0 319 41.4
Manes.16G064200 Manihot esculenta HOM05D006393 ORTHO05D008088 2.8e-51 207.6 319 42.0
Pp3c12_24880 Physcomitrium patens HOM05D006393 ORTHO05D008088 2.8e-51 207.6 323 41.5
Duzib168G1441 Durio zibethinus HOM05D006393 ORTHO05D008088 3.7e-51 207.2 319 40.4
PSO782G0281 Papaver somniferum HOM05D006393 ORTHO05D008088 6.3e-51 206.5 319 40.1
Aqoxy7G01879 Aquilegia oxysepala HOM05D006393 ORTHO05D008088 8.3e-51 206.1 319 41.1
Ciclev10008889m.g Citrus clementina HOM05D006393 ORTHO05D008088 8.3e-51 206.1 319 41.4
Sed0023374 Sechium edule HOM05D006393 ORTHO05D008088 1.1e-50 205.7 319 42.3
MELO3C025307.2 Cucumis melo HOM05D006393 ORTHO05D008088 3.1e-50 204.1 319 42.0
QL02p086364 Quercus lobata HOM05D006393 ORTHO05D008088 3.1e-50 204.1 323 42.1
Atru.chr7.1280 Acer truncatum HOM05D006393 ORTHO05D008088 7.0e-50 203.0 319 42.0
Potri.018G073000 Populus trichocarpa HOM05D006393 ORTHO05D008088 7.0e-50 203.0 317 42.0
Nn8g39292 Nelumbo nucifera HOM05D006393 ORTHO05D008088 9.1e-50 202.6 317 40.7
GSVIVG01015453001 Vitis vinifera HOM05D006393 ORTHO05D008088 9.1e-50 202.6 319 42.3
Thecc.09G116800 Theobroma cacao HOM05D006393 ORTHO05D008088 1.2e-49 202.2 317 41.3
CDE06G0973 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 4.5e-49 200.3 310 40.0
Thhalv10014278m.g Eutrema salsugineum HOM05D006393 ORTHO05D008088 5.9e-49 199.9 319 40.1
vmacro20677 Vaccinium macrocarpon HOM05D006393 ORTHO05D008088 5.9e-49 199.9 327 41.6
BcaB08g36553 Brassica carinata HOM05D006393 ORTHO05D008088 7.7e-49 199.5 319 39.2
CsaV3_1G030940 Cucumis sativus L. HOM05D006393 ORTHO05D008088 7.7e-49 199.5 319 40.8
MBI04_g35350_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 7.7e-49 199.5 285 42.1
AL6G31460 Arabidopsis lyrata HOM05D006393 ORTHO05D008088 1.0e-48 199.1 323 39.6
AT5G19930 Arabidopsis thaliana HOM05D006393 ORTHO05D008088 1.0e-48 199.1 319 39.5
TWI34G1546 Tripterygium wilfordii HOM05D006393 ORTHO05D008088 1.0e-48 199.1 323 41.8
MSTRG.1197 Avicennia marina HOM05D006393 ORTHO05D008088 1.3e-48 198.7 327 40.7
Carub.0006s1830 Capsella rubella HOM05D006393 ORTHO05D008088 1.3e-48 198.7 319 39.5
Sp6g24450 Schrenkiella parvula HOM05D006393 ORTHO05D008088 1.3e-48 198.7 319 38.9
Gohir.A06G059900 Gossypium hirsutum HOM05D006393 ORTHO05D008088 1.7e-48 198.4 319 40.1
Gorai.010G068300 Gossypium raimondii HOM05D006393 ORTHO05D008088 1.7e-48 198.4 319 39.8
PGR102G0276 Punica granatum HOM05D006393 ORTHO05D008088 1.7e-48 198.4 323 40.6
Cfa003299 Carpinus fangiana HOM05D006393 ORTHO05D008088 3.8e-48 197.2 323 39.9
BraA10t44056Z Brassica rapa HOM05D006393 ORTHO05D008088 5.0e-48 196.8 319 39.5
Migut.C00826 Erythranthe guttata HOM05D006393 ORTHO05D008088 5.0e-48 196.8 323 40.2
Gohir.D06G058100 Gossypium hirsutum HOM05D006393 ORTHO05D008088 5.0e-48 196.8 319 39.5
Cpa.g.sc23.161 Carica papaya HOM05D006393 ORTHO05D008088 6.6e-48 196.4 319 40.1
FvH4_1g04221 Fragaria vesca HOM05D006393 ORTHO05D008088 6.6e-48 196.4 319 39.5
unitig_37.g13035 Utricularia gibba HOM05D006393 ORTHO05D008088 6.6e-48 196.4 319 41.1
BcaC04g19399 Brassica carinata HOM05D006393 ORTHO05D008088 8.6e-48 196.1 319 38.9
A10p19800 Brassica napus HOM05D006393 ORTHO05D008088 8.6e-48 196.1 319 39.5
C09p56120 Brassica napus HOM05D006393 ORTHO05D008088 8.6e-48 196.1 319 38.9
BolC9t58479H Brassica oleracea HOM05D006393 ORTHO05D008088 8.6e-48 196.1 319 38.9
CAN.G1665.6 Capsicum annuum HOM05D006393 ORTHO05D008088 8.6e-48 196.1 327 40.4
Haze_25669 Corylus avellana HOM05D006393 ORTHO05D008088 8.6e-48 196.1 323 40.6
Hund09172 Selenicereus undatus HOM05D006393 ORTHO05D008088 1.1e-47 195.7 319 39.2
CSS0031330 Camellia sinensis var. sinensis HOM05D006393 ORTHO05D008088 1.9e-47 194.9 319 40.4
Lalb_Chr13g0302251 Lupinus albus HOM05D006393 ORTHO05D008088 1.9e-47 194.9 323 40.6
Actinidia09396 Actinidia chinensis HOM05D006393 ORTHO05D008088 2.5e-47 194.5 323 41.5
arahy.Tifrunner.gnm1.ann1.RZM4QH Arachis hypogaea HOM05D006393 ORTHO05D008088 2.5e-47 194.5 323 40.9
CiPaw.03G236400 Carya illinoinensis HOM05D006393 ORTHO05D008088 2.5e-47 194.5 323 40.9
AUR62033415 Chenopodium quinoa HOM05D006393 ORTHO05D008088 2.5e-47 194.5 323 41.2
Hma1.2p1_0018F.1_g013070 Hydrangea macrophylla HOM05D006393 ORTHO05D008088 2.5e-47 194.5 323 40.6
RcHm_v2.0_Chr2g0089771 Rosa chinensis HOM05D006393 ORTHO05D008088 2.5e-47 194.5 319 39.5
HanXRQChr03g0062141 Helianthus annuus HOM05D006393 ORTHO05D008088 3.3e-47 194.1 310 40.3
HPP92_009792 Vanilla planifolia HOM05D006393 ORTHO05D008088 3.3e-47 194.1 319 38.2
ClCG06G010490 Citrullus lanatus HOM05D006393 ORTHO05D008088 5.5e-47 193.4 320 39.7
DCAR_010438 Daucus carota HOM05D006393 ORTHO05D008088 5.5e-47 193.4 328 39.6
Lj4g0026371 Lotus japonicus HOM05D006393 ORTHO05D008088 5.5e-47 193.4 323 40.9
THA.LOC104815111 Tarenaya hassleriana HOM05D006393 ORTHO05D008088 5.5e-47 193.4 324 40.4
Aa31LG9G6050 Aethionema arabicum HOM05D006393 ORTHO05D008088 1.2e-46 192.2 319 37.9
arahy.Tifrunner.gnm1.ann1.3AE437 Arachis hypogaea HOM05D006393 ORTHO05D008088 1.6e-46 191.8 323 40.2
Nitab4.5_0002551g0020 Nicotiana tabacum HOM05D006393 ORTHO05D008088 1.6e-46 191.8 327 39.4
SGA_v2.0_scaffold92G28235 Striga asiatica HOM05D006393 ORTHO05D008088 2.8e-46 191.0 323 40.9
Prupe.7G235100 Prunus persica HOM05D006393 ORTHO05D008088 4.7e-46 190.3 319 39.2
Solyc10g079970.2 Solanum lycopersicum HOM05D006393 ORTHO05D008088 8.0e-46 189.5 327 38.8
AUR62011040 Chenopodium quinoa HOM05D006393 ORTHO05D008088 1.0e-45 189.1 309 40.5
MD02G1061500 Malus domestica HOM05D006393 ORTHO05D008088 1.0e-45 189.1 319 39.5
Sopen10g030590 Solanum pennellii HOM05D006393 ORTHO05D008088 1.0e-45 189.1 327 39.1
TPR.G26762 Trifolium pratense HOM05D006393 ORTHO05D008088 1.0e-45 189.1 317 39.4
MBI01_g13571_MAGBIO Magnolia biondii HOM05D006393 ORTHO05D008088 1.4e-45 188.7 307 39.4
PGSC0003DMG401029823 Solanum tuberosum HOM05D006393 ORTHO05D008088 1.4e-45 188.7 327 38.8
Ca_21724_v3 Cicer arietinum L. HOM05D006393 ORTHO05D008088 2.3e-45 188.0 323 39.6
EL10Ac8g18557 Beta vulgaris HOM05D006393 ORTHO05D008088 5.2e-45 186.8 323 40.6
Rhsim01G0090600 Rhododendron simsii HOM05D006393 ORTHO05D008088 6.8e-45 186.4 327 38.5
Nitab4.5_0010615g0010 Nicotiana tabacum HOM05D006393 ORTHO05D008088 8.9e-45 186.0 290 39.3
Medtr4g112990 Medicago truncatula HOM05D006393 ORTHO05D008088 1.2e-44 185.7 323 39.9
VMungo1215G0586 Vigna mungo HOM05D006393 ORTHO05D008088 1.5e-44 185.3 319 38.2
Glyma.17G120200 Glycine max HOM05D006393 ORTHO05D008088 2.0e-44 184.9 310 39.0
Cc06_g09230 Coffea canephora HOM05D006393 ORTHO05D008088 3.4e-44 184.1 280 40.7
HPP92_008697 Vanilla planifolia HOM05D006393 ORTHO05D008088 4.4e-44 183.7 331 38.4
PRCOL_00002470 Prasinoderma coloniale HOM05D006393 ORTHO05D008088 7.5e-44 183.0 353 39.7
Phvul.003G159300 Phaseolus vulgaris HOM05D006393 ORTHO05D008088 9.8e-44 182.6 319 39.8
Eucgr.C04142 Eucalyptus grandis HOM05D006393 ORTHO05D008088 2.9e-43 181.0 292 39.7
Psat4g042480 Pisum sativum HOM05D006393 ORTHO05D008088 4.9e-43 180.3 323 39.3
Sabra18G0063700 Salix brachista HOM05D006393 ORTHO05D008088 8.3e-43 179.5 317 39.7
ATR0083G026 Amborella trichopoda HOM05D006393 ORTHO05D008088 2.4e-42 177.9 319 38.6
Lsat_1_v5_gn_7_42880 Lactuca sativa HOM05D006393 ORTHO05D008088 5.4e-42 176.8 319 38.9
Sc07g0007380 Simmondsia chinensis HOM05D006393 ORTHO05D008088 4.6e-41 173.7 280 38.9
Oeu046267.2 Olea europaea HOM05D006393 ORTHO05D008088 1.3e-40 172.2 423 34.0
ECA240G0151 Erigeron canadensis HOM05D006393 ORTHO05D008088 3.9e-40 170.6 265 38.9
Zm00001eb122440 Zea mays HOM05D006393 ORTHO05D008088 3.9e-40 170.6 320 37.2
FAN23G0113 Fragaria x ananassa HOM05D006393 ORTHO05D008088 1.1e-39 169.1 319 37.3
Lj7A639G46 Lonicera japonica HOM05D006393 ORTHO05D008088 1.1e-39 169.1 319 38.6
Cre02.g118200 Chlamydomonas reinhardtii HOM05D006393 ORTHO05D008088 9.5e-39 166.0 283 41.0
Ah.14g081310 Amaranthus hybridus HOM05D006393 ORTHO05D008088 1.6e-38 165.2 383 34.5
Dinv41564 Davidia involucrata HOM05D006752 ORTHO05D008088 6.1e-38 163.3 238 42.4
CARHR192920 Cardamine hirsuta HOM05D006393 ORTHO05D008088 4.0e-37 160.6 246 39.4
Peaxi162Scf00223g01425 Petunia axillaris HOM05D006393 ORTHO05D008088 1.3e-35 155.6 181 48.1
MCO12G460 Micromonas commoda HOM05D006393 ORTHO05D008088 1.9e-34 151.8 163 49.1
Os01g0178200 Oryza sativa ssp. japonica HOM05D006393 ORTHO05D008088 3.5e-33 147.5 333 33.9
SalBow7G4467 Salvia bowleyana HOM05D006393 ORTHO05D008088 1.1e-31 142.5 181 44.8
TAR636G2166 Trochodendron aralioides HOM05D006393 ORTHO05D008088 4.0e-29 134.0 143 49.7
Peaxi162Scf00223g01424 Petunia axillaris HOM05D006393 ORTHO05D008088 1.9e-23 115.2 265 34.3
Oeu027539.2 Olea europaea HOM05D006393 ORTHO05D008088 2.1e-22 111.7 324 31.8
CDE07G1479 Ceratophyllum demersum HOM05D006393 ORTHO05D008088 6.4e-19 100.1 219 34.2
SEGI_23420 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 2.1e-17 95.1 349 29.8
SEGI_36873 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 4.6e-17 94.0 224 33.9
Psat6g218400 Pisum sativum HOM05D006393 ORTHO05D008088 7.8e-17 93.2 125 47.2
Glyma.05G012000 Glycine max HOM05D006393 ORTHO05D008088 3.0e-16 91.3 122 45.9
Psat5g214680 Pisum sativum HOM05D006393 ORTHO05D008088 2.9e-11 74.7 98 44.9
SEGI_10855 Sequoiadendron giganteum HOM05D006393 ORTHO05D008088 3.8e-11 74.3 227 28.6
Zm00001eb342450 Zea mays HOM05D006393 ORTHO05D008088 1.6e-06 58.9 140 29.3


User provided reference genes

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