Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre17.g714250 Chlamydomonas reinhardtii HOM05D018182 ORTHO05D020414 2.7e-62 241.9 130 100.0
MCO02G399 Micromonas commoda HOM05D018182 ORTHO05D020414 2.6e-20 102.4 111 41.4
PRCOL_00003507 Prasinoderma coloniale HOM05D018182 ORTHO05D020414 7.8e-17 90.9 111 38.7
Cre12.g528850 Chlamydomonas reinhardtii HOM05D018182 ORTHO05D020414 4.0e-13 78.6 92 41.3
PRCOL_00000218 Prasinoderma coloniale HOM05D018182 ORTHO05D020414 1.3e-11 73.6 81 37.0
C04p71460 Brassica napus HOM05D000247 ORTHO05D000288 2.1e-09 66.2 109 30.3
Psat3g052760 Pisum sativum HOM05D000247 ORTHO05D000288 6.0e-09 64.7 110 35.5
SalBow3G2889 Salvia bowleyana HOM05D000247 ORTHO05D000288 7.8e-09 64.3 109 31.2
Cc11_g13630 Coffea canephora HOM05D000247 ORTHO05D000288 3.9e-08 62.0 104 29.8
A04p33730 Brassica napus HOM05D000247 ORTHO05D000288 6.6e-08 61.2 109 29.4
BraA04t18835Z Brassica rapa HOM05D000247 ORTHO05D000288 6.6e-08 61.2 109 29.4
SEGI_06061 Sequoiadendron giganteum HOM05D000247 ORTHO05D000288 6.6e-08 61.2 99 34.3
ClCG05G024700 Citrullus lanatus HOM05D000247 ORTHO05D000288 8.7e-08 60.8 108 28.7
HanXRQChr01g0000531 Helianthus annuus HOM05D000247 ORTHO05D000288 8.7e-08 60.8 109 29.4
HanXRQChr12g0367921 Helianthus annuus HOM05D000247 ORTHO05D000288 8.7e-08 60.8 114 28.9
ECA248G0111 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.1e-07 60.5 115 29.6
HanXRQChr11g0345311 Helianthus annuus HOM05D000247 ORTHO05D000288 1.1e-07 60.5 115 28.7
Pp3c10_4370 Physcomitrium patens HOM05D001170 ORTHO05D006602 1.1e-07 60.5 115 30.4
Sed0009434 Sechium edule HOM05D000247 ORTHO05D000288 1.1e-07 60.5 108 27.8
Thhalv10019609m.g Eutrema salsugineum HOM05D000247 ORTHO05D000288 1.5e-07 60.1 102 33.3
CsaV3_5G032200 Cucumis sativus L. HOM05D000247 ORTHO05D000288 1.9e-07 59.7 108 28.7
MBI15_g32288_MAGBIO Magnolia biondii HOM05D000247 ORTHO05D000288 1.9e-07 59.7 102 30.4
Aa31LG9G1660 Aethionema arabicum HOM05D000247 ORTHO05D000288 2.5e-07 59.3 106 27.4
Potri.006G110100 Populus trichocarpa HOM05D000247 ORTHO05D000288 2.5e-07 59.3 112 29.5
Hma1.2p1_0265F.1_g106490 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 3.3e-07 58.9 109 26.6
Hma1.2p1_0265F.1_g106515 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 3.3e-07 58.9 109 26.6
vmacro05740 Vaccinium macrocarpon HOM05D000247 ORTHO05D000288 4.3e-07 58.5 96 33.3
Sed0018469 Sechium edule HOM05D000247 ORTHO05D000288 7.3e-07 57.8 106 31.1
Potri.016G138800 Populus trichocarpa HOM05D000247 ORTHO05D000288 9.6e-07 57.4 112 28.6
TAR371G0005 Trochodendron aralioides HOM05D000247 ORTHO05D000288 9.6e-07 57.4 95 28.4
HPP92_000777 Vanilla planifolia HOM05D000247 ORTHO05D000288 9.6e-07 57.4 105 30.5
Aqoxy3G00791 Aquilegia oxysepala HOM05D000247 ORTHO05D000288 1.3e-06 57.0 94 28.7
CDE04G2261 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 1.3e-06 57.0 110 27.3
Migut.J00022 Erythranthe guttata HOM05D000247 ORTHO05D000288 1.3e-06 57.0 112 29.5
Hund25283 Selenicereus undatus HOM05D000247 ORTHO05D000288 1.3e-06 57.0 95 33.7
CDE08G1178 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 1.6e-06 56.6 97 28.9
Hma1.2p1_0537F.1_g174240 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 1.6e-06 56.6 104 28.8
Nn5g26816 Nelumbo nucifera HOM05D000247 ORTHO05D000288 1.6e-06 56.6 107 29.9
Solyc09g015820.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 1.6e-06 56.6 113 25.7
PGSC0003DMG400022959 Solanum tuberosum HOM05D000247 ORTHO05D000288 1.6e-06 56.6 108 31.5
Haze_21196 Corylus avellana HOM05D000050 ORTHO05D000288 2.1e-06 56.2 106 30.2
ECA234G2386 Erigeron canadensis HOM05D000247 ORTHO05D000288 2.1e-06 56.2 104 26.9
Medtr1g023140 Medicago truncatula HOM05D000247 ORTHO05D000288 2.1e-06 56.2 98 30.6
Pp3c1_28390 Physcomitrium patens HOM05D000247 ORTHO05D000288 2.1e-06 56.2 99 31.3
Sed0005900 Sechium edule HOM05D000247 ORTHO05D000288 2.1e-06 56.2 112 29.5
HPP92_018826 Vanilla planifolia HOM05D000247 ORTHO05D000288 2.1e-06 56.2 85 31.8
CSS0032442 Camellia sinensis var. sinensis HOM05D000247 ORTHO05D000288 2.8e-06 55.8 112 26.8
ClCG04G006290 Citrullus lanatus HOM05D000247 ORTHO05D000288 2.8e-06 55.8 112 29.5
FvH4_6g49370 Fragaria vesca HOM05D000247 ORTHO05D000288 2.8e-06 55.8 104 27.9
FAN14G3699 Fragaria x ananassa HOM05D000247 ORTHO05D000288 2.8e-06 55.8 104 27.9
Lsat_1_v5_gn_4_116761 Lactuca sativa HOM05D000247 ORTHO05D000288 2.8e-06 55.8 102 31.4
Sopen09g009960 Solanum pennellii HOM05D000247 ORTHO05D000288 2.8e-06 55.8 111 26.1
TWI74G0617 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 2.8e-06 55.8 104 28.8
TAR623G0637 Trochodendron aralioides HOM05D000247 ORTHO05D000288 2.8e-06 55.8 98 30.6
Cpa.g.sc5.286 Carica papaya HOM05D000247 ORTHO05D000288 3.6e-06 55.5 100 27.0
CDE06G1670 Ceratophyllum demersum HOM05D000247 ORTHO05D000288 3.6e-06 55.5 97 28.9
CBR_g78792 Chara braunii HOM05D018182 ORTHO05D020414 3.6e-06 55.5 76 31.6
DCAR_017514 Daucus carota HOM05D000247 ORTHO05D000288 3.6e-06 55.5 94 31.9
Dinv16959 Davidia involucrata HOM05D000247 ORTHO05D000288 3.6e-06 55.5 112 26.8
Hma1.2p1_0174F.1_g076730 Hydrangea macrophylla HOM05D000247 ORTHO05D000288 3.6e-06 55.5 104 28.8
Lsat_1_v5_gn_4_116721 Lactuca sativa HOM05D000247 ORTHO05D000288 3.6e-06 55.5 101 32.7
Lsat_1_v5_gn_4_9420 Lactuca sativa HOM05D000247 ORTHO05D000288 3.6e-06 55.5 95 29.5
Medtr5g037950 Medicago truncatula HOM05D000247 ORTHO05D000288 3.6e-06 55.5 106 28.3
Phvul.003G070700 Phaseolus vulgaris HOM05D000247 ORTHO05D000288 3.6e-06 55.5 101 28.7
PGR119G0521 Punica granatum HOM05D000247 ORTHO05D000288 3.6e-06 55.5 102 30.4
PGR119G1518 Punica granatum HOM05D000247 ORTHO05D000288 3.6e-06 55.5 102 30.4
QL03p066348 Quercus lobata HOM05D000247 ORTHO05D000288 3.6e-06 55.5 100 29.0
Solyc03g095500.3 Solanum lycopersicum HOM05D000247 ORTHO05D000288 3.6e-06 55.5 108 31.5
TPR.G26745 Trifolium pratense HOM05D000247 ORTHO05D000288 3.6e-06 55.5 97 29.9
TWI77G0033 Tripterygium wilfordii HOM05D000247 ORTHO05D000288 3.6e-06 55.5 104 28.8
TAR636G0702 Trochodendron aralioides HOM05D000247 ORTHO05D000288 3.6e-06 55.5 107 28.0
HPP92_026802 Vanilla planifolia HOM05D000247 ORTHO05D000288 3.6e-06 55.5 105 29.5
AUR62026467 Chenopodium quinoa HOM05D000247 ORTHO05D000288 4.8e-06 55.1 106 27.4
Ciclev10013081m.g Citrus clementina HOM05D000247 ORTHO05D000288 4.8e-06 55.1 95 28.4
CsaV3_4G027270 Cucumis sativus L. HOM05D000247 ORTHO05D000288 4.8e-06 55.1 112 28.6
PGR142G1107 Punica granatum HOM05D000247 ORTHO05D000288 4.8e-06 55.1 101 27.7
Sopen03g025490 Solanum pennellii HOM05D000247 ORTHO05D000288 4.8e-06 55.1 106 30.2
GSVIVG01025873001 Vitis vinifera HOM05D000247 ORTHO05D000288 4.8e-06 55.1 106 28.3
AT5G39950 Arabidopsis thaliana HOM05D000247 ORTHO05D000288 6.2e-06 54.7 107 27.1
CiPaw.09G222700 Carya illinoinensis HOM05D000247 ORTHO05D000288 6.2e-06 54.7 109 27.5
FAN09G2581 Fragaria x ananassa HOM05D000247 ORTHO05D000288 6.2e-06 54.7 103 27.2
Medtr7g009070 Medicago truncatula HOM05D000247 ORTHO05D000288 6.2e-06 54.7 100 29.0
Pp3c14_3630 Physcomitrium patens HOM05D001170 ORTHO05D006602 6.2e-06 54.7 114 28.9
Zm00001eb212760 Zea mays HOM05D000247 ORTHO05D000288 6.2e-06 54.7 94 29.8
Actinidia36029 Actinidia chinensis HOM05D000247 ORTHO05D000288 8.1e-06 54.3 88 30.7
COL.COLO4_36202 Corchorus olitorius HOM05D000247 ORTHO05D000288 8.1e-06 54.3 105 27.6
PSO478G4773 Papaver somniferum HOM05D000247 ORTHO05D000288 8.1e-06 54.3 99 30.3


User provided reference genes

Program Settings