Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre17.g707950 Chlamydomonas reinhardtii HOM05D002826 ORTHO05D003105 1.3e-111 406.4 206 100.0
DCAR_007216 Daucus carota HOM05D000508 ORTHO05D000371 9.5e-09 64.7 116 36.2
DCAR_013893 Daucus carota HOM05D002826 ORTHO05D003105 2.1e-08 63.5 106 34.0
Manes.05G141900 Manihot esculenta HOM05D002826 ORTHO05D003105 2.8e-08 63.2 106 34.0
TWI56G0331 Tripterygium wilfordii HOM05D002826 ORTHO05D003105 2.8e-08 63.2 98 33.7
ClCG02G003880 Citrullus lanatus HOM05D002826 ORTHO05D003105 3.6e-08 62.8 102 35.3
MD10G1129200 Malus domestica HOM05D002826 ORTHO05D003105 3.6e-08 62.8 102 35.3
Nn6g31897 Nelumbo nucifera HOM05D002826 ORTHO05D003105 3.6e-08 62.8 105 33.3
Potri.010G132400 Populus trichocarpa HOM05D002826 ORTHO05D003105 3.6e-08 62.8 73 46.6
Solyc05g010070.3 Solanum lycopersicum HOM05D002826 ORTHO05D003105 3.6e-08 62.8 71 49.3
Sopen05g005870 Solanum pennellii HOM05D002826 ORTHO05D003105 3.6e-08 62.8 71 49.3
Atru.chr13.209 Acer truncatum HOM05D002826 ORTHO05D003105 4.7e-08 62.4 106 34.0
MELO3C013330.2 Cucumis melo HOM05D002826 ORTHO05D003105 4.7e-08 62.4 102 35.3
Potri.005G246200 Populus trichocarpa HOM05D002826 ORTHO05D003105 4.7e-08 62.4 87 36.8
QL02p013021 Quercus lobata HOM05D002826 ORTHO05D003105 4.7e-08 62.4 108 35.2
Rhsim06G0011300 Rhododendron simsii HOM05D002826 ORTHO05D003105 4.7e-08 62.4 78 38.5
TAR628G1706 Trochodendron aralioides HOM05D002826 ORTHO05D003105 4.7e-08 62.4 91 37.4
Migut.E00281 Erythranthe guttata HOM05D002826 ORTHO05D003105 6.2e-08 62.0 101 36.6
Lj4A802T110 Lonicera japonica HOM05D002826 ORTHO05D003105 6.2e-08 62.0 106 32.1
Sabra02G0012700 Salix brachista HOM05D002826 ORTHO05D003105 6.2e-08 62.0 82 37.8
Sabra10G0101100 Salix brachista HOM05D002826 ORTHO05D003105 6.2e-08 62.0 60 50.0
PGSC0003DMG400025127 Solanum tuberosum HOM05D000508 ORTHO05D000371 6.2e-08 62.0 143 35.0
AT5G27280 Arabidopsis thaliana HOM05D002826 ORTHO05D003105 8.1e-08 61.6 70 42.9
Carub.0006s2525 Capsella rubella HOM05D002826 ORTHO05D003105 8.1e-08 61.6 75 41.3
CsaV3_7G001250 Cucumis sativus L. HOM05D002826 ORTHO05D003105 8.1e-08 61.6 102 34.3
Duzib116G0507 Durio zibethinus HOM05D002826 ORTHO05D003105 8.1e-08 61.6 83 37.3
SalBow6G2958 Salvia bowleyana HOM05D002826 ORTHO05D003105 8.1e-08 61.6 78 38.5
PGSC0003DMG400009958 Solanum tuberosum HOM05D002826 ORTHO05D003105 8.1e-08 61.6 102 33.3
Actinidia17021 Actinidia chinensis HOM05D002826 ORTHO05D003105 1.1e-07 61.2 78 37.2
Ciclev10002475m.g Citrus clementina HOM05D002826 ORTHO05D003105 1.1e-07 61.2 82 37.8
Migut.N03189 Erythranthe guttata HOM05D002826 ORTHO05D003105 1.1e-07 61.2 77 39.0
Lsat_1_v5_gn_2_6900 Lactuca sativa HOM05D002826 ORTHO05D003105 1.1e-07 61.2 85 37.6
Peaxi162Scf00174g01015 Petunia axillaris HOM05D002826 ORTHO05D003105 1.1e-07 61.2 102 32.4
Potri.002G015900 Populus trichocarpa HOM05D002826 ORTHO05D003105 1.1e-07 61.2 82 37.8
Sed0005065 Sechium edule HOM05D002826 ORTHO05D003105 1.1e-07 61.2 89 40.4
Thecc.08G052500 Theobroma cacao HOM05D002826 ORTHO05D003105 1.1e-07 61.2 83 37.3
vmacro21847 Vaccinium macrocarpon HOM05D002826 ORTHO05D003105 1.1e-07 61.2 82 36.6
Zm00001eb161510 Zea mays HOM05D002826 ORTHO05D003105 1.1e-07 61.2 75 41.3
AL6G39820 Arabidopsis lyrata HOM05D002826 ORTHO05D003105 1.4e-07 60.8 74 40.5
Haze_22718 Corylus avellana HOM05D002826 ORTHO05D003105 1.4e-07 60.8 87 34.5
Thhalv10027929m.g Eutrema salsugineum HOM05D002826 ORTHO05D003105 1.4e-07 60.8 84 36.9
HanXRQChr11g0322251 Helianthus annuus HOM05D002826 ORTHO05D003105 1.4e-07 60.8 84 38.1
HanXRQChr16g0527021 Helianthus annuus HOM05D002826 ORTHO05D003105 1.4e-07 60.8 53 52.8
Sabra05G0190300 Salix brachista HOM05D002826 ORTHO05D003105 1.4e-07 60.8 82 37.8
Aa31LG9G12360 Aethionema arabicum HOM05D002826 ORTHO05D003105 1.8e-07 60.5 85 38.8
CAN.G311.81 Capsicum annuum HOM05D002826 ORTHO05D003105 1.8e-07 60.5 106 33.0
Nitab4.5_0010558g0030 Nicotiana tabacum HOM05D002826 ORTHO05D003105 1.8e-07 60.5 42 64.3
Pp3c5_3740 Physcomitrium patens HOM05D002826 ORTHO05D003105 1.8e-07 60.5 81 38.3
RcHm_v2.0_Chr6g0279051 Rosa chinensis HOM05D002826 ORTHO05D003105 1.8e-07 60.5 117 33.3
CANSAT25G1892 Cannabis sativa HOM05D002826 ORTHO05D003105 2.3e-07 60.1 81 37.0
CANSAT25G2885 Cannabis sativa HOM05D002826 ORTHO05D003105 2.3e-07 60.1 81 37.0
Cpa.g.sc26.255 Carica papaya HOM05D002826 ORTHO05D003105 2.3e-07 60.1 82 36.6
Dinv31898 Davidia involucrata HOM05D002826 ORTHO05D003105 2.3e-07 60.1 91 38.5
Dinv39561 Davidia involucrata HOM05D002826 ORTHO05D003105 2.3e-07 60.1 101 32.7
Solyc04g082020.3 Solanum lycopersicum HOM05D002826 ORTHO05D003105 2.3e-07 60.1 102 33.3
Sopen04g035670 Solanum pennellii HOM05D002826 ORTHO05D003105 2.3e-07 60.1 102 33.3
Atru.chr11.1427 Acer truncatum HOM05D002826 ORTHO05D003105 3.1e-07 59.7 93 38.7
CAN.G184.64 Capsicum annuum HOM05D002826 ORTHO05D003105 3.1e-07 59.7 47 57.4
ECA232G0330 Erigeron canadensis HOM05D002826 ORTHO05D003105 3.1e-07 59.7 82 37.8
FAN15G0661 Fragaria x ananassa HOM05D002826 ORTHO05D003105 3.1e-07 59.7 117 33.3
FAN20G0297 Fragaria x ananassa HOM05D002236 ORTHO05D002341 3.1e-07 59.7 117 33.3
FAN27G0593 Fragaria x ananassa HOM05D002826 ORTHO05D003105 3.1e-07 59.7 111 34.2
Hma1.2p1_3012F.1_g331620 Hydrangea macrophylla HOM05D002826 ORTHO05D003105 3.1e-07 59.7 79 39.2
MD05G1126400 Malus domestica HOM05D002826 ORTHO05D003105 3.1e-07 59.7 102 33.3
Prupe.8G169800 Prunus persica HOM05D002826 ORTHO05D003105 3.1e-07 59.7 117 33.3
SGA_v2.0_scaffold59G20634 Striga asiatica HOM05D002826 ORTHO05D003105 3.1e-07 59.7 93 38.7
HPP92_014544 Vanilla planifolia HOM05D002236 ORTHO05D002341 3.1e-07 59.7 82 36.6
Zm00001eb228290 Zea mays HOM05D002826 ORTHO05D003105 3.1e-07 59.7 77 37.7
Zm00001eb272170 Zea mays HOM05D002826 ORTHO05D003105 3.1e-07 59.7 77 37.7
BcaC03g16466 Brassica carinata HOM05D002826 ORTHO05D003105 4.0e-07 59.3 74 39.2
C02p42780 Brassica napus HOM05D002826 ORTHO05D003105 4.0e-07 59.3 74 39.2
BolC2t10314H Brassica oleracea HOM05D002826 ORTHO05D003105 4.0e-07 59.3 74 39.2
CSS0009204 Camellia sinensis var. sinensis HOM05D002826 ORTHO05D003105 4.0e-07 59.3 78 37.2
Os06g0724400 Oryza sativa ssp. japonica HOM05D002826 ORTHO05D003105 4.0e-07 59.3 80 35.0
Sed0003034 Sechium edule HOM05D002826 ORTHO05D003105 4.0e-07 59.3 76 38.2
THA.LOC104813220 Tarenaya hassleriana HOM05D002826 ORTHO05D003105 4.0e-07 59.3 82 36.6
CiPaw.08G069700 Carya illinoinensis HOM05D002826 ORTHO05D003105 5.2e-07 58.9 105 33.3
Cc11_g10940 Coffea canephora HOM05D002826 ORTHO05D003105 5.2e-07 58.9 47 59.6
ECA234G4437 Erigeron canadensis HOM05D002826 ORTHO05D003105 5.2e-07 58.9 60 45.0
Eucgr.F03705 Eucalyptus grandis HOM05D002826 ORTHO05D003105 5.2e-07 58.9 82 35.4
FvH4_2g15740 Fragaria vesca HOM05D002826 ORTHO05D003105 5.2e-07 58.9 117 33.3
FAN24G2039 Fragaria x ananassa HOM05D002826 ORTHO05D003105 5.2e-07 58.9 117 33.3
Nitab4.5_0003030g0020 Nicotiana tabacum HOM05D002826 ORTHO05D003105 5.2e-07 58.9 102 33.3
PSO675G0007 Papaver somniferum HOM05D002826 ORTHO05D003105 5.2e-07 58.9 95 36.8
Sc18g0006230 Simmondsia chinensis HOM05D002826 ORTHO05D003105 5.2e-07 58.9 101 34.7
GSVIVG01008732001 Vitis vinifera HOM05D002826 ORTHO05D003105 5.2e-07 58.9 82 35.4
HanXRQChr06g0184841 Helianthus annuus HOM05D002826 ORTHO05D003105 6.8e-07 58.5 85 36.5
Lj2g0003137 Lotus japonicus HOM05D002826 ORTHO05D003105 6.8e-07 58.5 96 38.5
MD16G1050900 Malus domestica HOM05D002826 ORTHO05D003105 6.8e-07 58.5 60 48.3
Peaxi162Scf00198g00412 Petunia axillaris HOM05D002826 ORTHO05D003105 6.8e-07 58.5 65 46.2
TAR622G0552 Trochodendron aralioides HOM05D002826 ORTHO05D003105 6.8e-07 58.5 47 59.6
unitig_27.g25229 Utricularia gibba HOM05D002826 ORTHO05D003105 6.8e-07 58.5 98 33.7
ATR0661G310 Amborella trichopoda HOM05D002826 ORTHO05D003105 8.9e-07 58.2 73 38.4
CSS0023064 Camellia sinensis var. sinensis HOM05D002826 ORTHO05D003105 8.9e-07 58.2 82 36.6
Nn3g17658 Nelumbo nucifera HOM05D002826 ORTHO05D003105 8.9e-07 58.2 47 59.6
QL11p052502 Quercus lobata HOM05D002826 ORTHO05D003105 8.9e-07 58.2 78 35.9
MELO3C012198.2 Cucumis melo HOM05D002826 ORTHO05D003105 1.2e-06 57.8 62 45.2
CsaV3_5G033810 Cucumis sativus L. HOM05D002826 ORTHO05D003105 1.2e-06 57.8 60 46.7
HanXRQChr11g0335291 Helianthus annuus HOM05D002826 ORTHO05D003105 1.2e-06 57.8 52 50.0
Lsat_1_v5_gn_4_20381 Lactuca sativa HOM05D002826 ORTHO05D003105 1.2e-06 57.8 53 50.9
Manes.14G095500 Manihot esculenta HOM05D002826 ORTHO05D003105 1.2e-06 57.8 60 46.7
PSO541G5721 Papaver somniferum HOM05D002826 ORTHO05D003105 1.2e-06 57.8 95 36.8
Sp7g08460 Schrenkiella parvula HOM05D002826 ORTHO05D003105 1.2e-06 57.8 74 39.2
TAR381G1567 Trochodendron aralioides HOM05D002826 ORTHO05D003105 1.2e-06 57.8 90 35.6
Gohir.A01G108700 Gossypium hirsutum HOM05D002826 ORTHO05D003105 1.5e-06 57.4 83 34.9
Gohir.D01G095300 Gossypium hirsutum HOM05D002826 ORTHO05D003105 1.5e-06 57.4 83 34.9
Gorai.002G120700 Gossypium raimondii HOM05D002826 ORTHO05D003105 1.5e-06 57.4 83 34.9
PRCOL_00000340 Prasinoderma coloniale HOM05D002826 ORTHO05D003105 1.5e-06 57.4 47 51.1
Sed0001204 Sechium edule HOM05D002826 ORTHO05D003105 1.5e-06 57.4 100 35.0
vmacro10504 Vaccinium macrocarpon HOM05D002826 ORTHO05D003105 1.5e-06 57.4 108 33.3
Aqoxy3G00440 Aquilegia oxysepala HOM05D002826 ORTHO05D003105 2.0e-06 57.0 79 41.8
CARHR185890 Cardamine hirsuta HOM05D002826 ORTHO05D003105 2.0e-06 57.0 74 37.8
Glyma.01G092100 Glycine max HOM05D002826 ORTHO05D003105 2.0e-06 57.0 79 45.6
Medtr4g045783 Medicago truncatula HOM05D002826 ORTHO05D003105 2.0e-06 57.0 65 49.2
SalBow8G2187 Salvia bowleyana HOM05D002826 ORTHO05D003105 2.0e-06 57.0 47 53.2
SMO170G0032 Selaginella moellendorffii HOM05D002826 ORTHO05D003105 2.0e-06 57.0 53 49.1
SGA_v2.0_scaffold145G36105 Striga asiatica HOM05D002826 ORTHO05D003105 2.0e-06 57.0 92 35.9
THA.LOC104801664 Tarenaya hassleriana HOM05D002826 ORTHO05D003105 2.0e-06 57.0 53 54.7
CBR_g44611 Chara braunii HOM05D002826 ORTHO05D003105 2.6e-06 56.6 47 53.2
Cc10_g01070 Coffea canephora HOM05D002826 ORTHO05D003105 2.6e-06 56.6 101 31.7
SalBow7G0593 Salvia bowleyana HOM05D002826 ORTHO05D003105 2.6e-06 56.6 71 38.0
Ah.01g023310 Amaranthus hybridus HOM05D002826 ORTHO05D003105 3.4e-06 56.2 106 34.9
Cfa005295 Carpinus fangiana HOM05D002826 ORTHO05D003105 3.4e-06 56.2 78 34.6
CDE10G0793 Ceratophyllum demersum HOM05D002826 ORTHO05D003105 3.4e-06 56.2 66 40.9
ClCG05G023210 Citrullus lanatus HOM05D002826 ORTHO05D003105 3.4e-06 56.2 60 45.0
Haze_02092 Corylus avellana HOM05D002826 ORTHO05D003105 3.4e-06 56.2 78 34.6
Eucgr.G02379 Eucalyptus grandis HOM05D002826 ORTHO05D003105 3.4e-06 56.2 82 37.8
Gohir.D12G175900 Gossypium hirsutum HOM05D002826 ORTHO05D003105 3.4e-06 56.2 47 51.1
Gorai.008G188300 Gossypium raimondii HOM05D002826 ORTHO05D003105 3.4e-06 56.2 47 51.1
Mapoly0030s0011 Marchantia polymorpha HOM05D002826 ORTHO05D003105 3.4e-06 56.2 101 38.6
Thecc.02G364300 Theobroma cacao HOM05D002826 ORTHO05D003105 3.4e-06 56.2 47 51.1
TPR.G2677 Trifolium pratense HOM05D002826 ORTHO05D003105 3.4e-06 56.2 62 45.2
unitig_744.g24605 Utricularia gibba HOM05D002826 ORTHO05D003105 3.4e-06 56.2 63 39.7
Aqoxy6G01935 Aquilegia oxysepala HOM05D002826 ORTHO05D003105 4.4e-06 55.8 65 41.5
C06p41140 Brassica napus HOM05D002826 ORTHO05D003105 4.4e-06 55.8 79 39.2
Duzib251G0034 Durio zibethinus HOM05D002826 ORTHO05D003105 4.4e-06 55.8 47 51.1
Eucgr.I01459 Eucalyptus grandis HOM05D002826 ORTHO05D003105 4.4e-06 55.8 63 41.3
Gohir.A12G173300 Gossypium hirsutum HOM05D002826 ORTHO05D003105 4.4e-06 55.8 47 51.1
Hund25117 Selenicereus undatus HOM05D002826 ORTHO05D003105 4.4e-06 55.8 47 55.3
TWI75G1715 Tripterygium wilfordii HOM05D002826 ORTHO05D003105 4.4e-06 55.8 66 42.4
arahy.Tifrunner.gnm1.ann1.69EVEX Arachis hypogaea HOM05D002826 ORTHO05D003105 5.8e-06 55.5 60 48.3
arahy.Tifrunner.gnm1.ann1.C8TUAR Arachis hypogaea HOM05D002826 ORTHO05D003105 5.8e-06 55.5 47 57.4
EL10Ac9g21332 Beta vulgaris HOM05D002826 ORTHO05D003105 5.8e-06 55.5 61 41.0
BcaB05g24406 Brassica carinata HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
BcaC03g14979 Brassica carinata HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
BcaC08g46324 Brassica carinata HOM05D002826 ORTHO05D003105 5.8e-06 55.5 73 39.7
A02p15290 Brassica napus HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
A07p35130 Brassica napus HOM05D002826 ORTHO05D003105 5.8e-06 55.5 79 39.2
C02p25140 Brassica napus HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
BolC2t08593H Brassica oleracea HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
BraA02t06591Z Brassica rapa HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
Dinv27423 Davidia involucrata HOM05D002826 ORTHO05D003105 5.8e-06 55.5 47 55.3
Thhalv10019239m.g Eutrema salsugineum HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
FAN22G0168 Fragaria x ananassa HOM05D002826 ORTHO05D003105 5.8e-06 55.5 72 37.5
Sp5g23840 Schrenkiella parvula HOM05D002826 ORTHO05D003105 5.8e-06 55.5 53 50.9
SEGI_27970 Sequoiadendron giganteum HOM05D002826 ORTHO05D003105 5.8e-06 55.5 89 36.0
Actinidia30164 Actinidia chinensis HOM05D000508 ORTHO05D000371 7.5e-06 55.1 80 40.0
AagrBONN_evm.TU.Sc2ySwM_362.1913 Anthoceros agrestis HOM05D002826 ORTHO05D003105 7.5e-06 55.1 56 44.6
BcaB03g15843 Brassica carinata HOM05D002826 ORTHO05D003105 7.5e-06 55.1 81 42.0
BraA07t31106Z Brassica rapa HOM05D002826 ORTHO05D003105 7.5e-06 55.1 73 39.7
CiPaw.05G085900 Carya illinoinensis HOM05D002826 ORTHO05D003105 7.5e-06 55.1 78 33.3
CiPaw.06G098700 Carya illinoinensis HOM05D002826 ORTHO05D003105 7.5e-06 55.1 53 49.1
AUR62010005 Chenopodium quinoa HOM05D002826 ORTHO05D003105 7.5e-06 55.1 76 38.2
AUR62012994 Chenopodium quinoa HOM05D002826 ORTHO05D003105 7.5e-06 55.1 76 38.2
Lalb_Chr10g0099611 Lupinus albus HOM05D002826 ORTHO05D003105 7.5e-06 55.1 77 44.2
PGR142G1133 Punica granatum HOM05D002826 ORTHO05D003105 7.5e-06 55.1 78 33.3
SGA_v2.0_scaffold275G46539 Striga asiatica HOM05D002826 ORTHO05D003105 7.5e-06 55.1 70 37.1
AT1G68730 Arabidopsis thaliana HOM05D002826 ORTHO05D003105 9.9e-06 54.7 53 52.8
CANSAT80G1162 Cannabis sativa HOM05D002826 ORTHO05D003105 9.9e-06 54.7 47 51.1
Psat2g088920 Pisum sativum HOM05D002826 ORTHO05D003105 9.9e-06 54.7 47 53.2


User provided reference genes

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