Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g690350 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D034437 2.2e-208 728.8 394 100.0
PRCOL_00002599 Prasinoderma coloniale HOM05D005243 ORTHO05D034437 2.1e-25 120.9 200 42.5
MCO05G001 Micromonas commoda HOM05D005243 ORTHO05D034437 1.4e-24 118.2 241 34.9
PGSC0003DMG400033127 Solanum tuberosum HOM05D005243 ORTHO05D006670 6.2e-17 92.8 228 30.7
CDE04G2106 Ceratophyllum demersum HOM05D005243 ORTHO05D006670 1.4e-16 91.7 256 30.9
Sopen06g023050 Solanum pennellii HOM05D005243 ORTHO05D006670 1.8e-16 91.3 228 30.7
MCO11G814 Micromonas commoda HOM05D005243 ORTHO05D006670 2.4e-16 90.9 264 28.0
Solyc06g064570.3 Solanum lycopersicum HOM05D005243 ORTHO05D006670 3.1e-16 90.5 228 30.7
MD10G1004900 Malus domestica HOM05D005243 ORTHO05D006670 4.0e-16 90.1 256 30.1
Lsat_1_v5_gn_4_135781 Lactuca sativa HOM05D005243 ORTHO05D006670 9.0e-16 89.0 255 29.8
Prupe.8G007400 Prunus persica HOM05D005243 ORTHO05D006670 9.0e-16 89.0 265 30.2
RcHm_v2.0_Chr6g0251261 Rosa chinensis HOM05D005243 ORTHO05D006670 1.5e-15 88.2 261 28.7
unitig_37.g13079 Utricularia gibba HOM05D005243 ORTHO05D006670 3.4e-15 87.0 260 29.2
Cfa008079 Carpinus fangiana HOM05D005243 ORTHO05D006670 4.5e-15 86.7 256 28.9
HPP92_001198 Vanilla planifolia HOM05D005243 ORTHO05D006670 5.8e-15 86.3 253 28.1
EL10Ac1g01265 Beta vulgaris HOM05D005243 ORTHO05D006670 7.6e-15 85.9 228 32.5
SMO119G0058 Selaginella moellendorffii HOM05D005243 ORTHO05D006670 7.6e-15 85.9 276 28.3
HanXRQChr09g0267031 Helianthus annuus HOM05D005243 ORTHO05D006670 1.0e-14 85.5 258 30.2
Thhalv10008173m.g Eutrema salsugineum HOM05D005243 ORTHO05D006670 1.7e-14 84.7 256 28.1
BcaB03g14182 Brassica carinata HOM05D005243 ORTHO05D006670 2.2e-14 84.3 256 28.1
SGA_v2.0_scaffold118G32611 Striga asiatica HOM05D005243 ORTHO05D006670 2.2e-14 84.3 248 29.4
THA.LOC104810374 Tarenaya hassleriana HOM05D005243 ORTHO05D006670 2.2e-14 84.3 255 28.6
MCO07G378 Micromonas commoda HOM05D003378 ORTHO05D003942 2.9e-14 84.0 219 30.1
Sed0009328 Sechium edule HOM05D005243 ORTHO05D006670 2.9e-14 84.0 258 28.7
BcaC06g34999 Brassica carinata HOM05D005243 ORTHO05D006670 4.9e-14 83.2 274 27.4
Hund16915 Selenicereus undatus HOM05D005243 ORTHO05D006670 4.9e-14 83.2 273 28.9
arahy.Tifrunner.gnm1.ann1.2FZ5KR Arachis hypogaea HOM05D005243 ORTHO05D006670 8.4e-14 82.4 253 29.2
Atru.chr13.2491 Acer truncatum HOM05D005243 ORTHO05D006670 1.1e-13 82.0 250 28.4
Atru.chr13.2503 Acer truncatum HOM05D005243 ORTHO05D006670 1.1e-13 82.0 250 28.4
GSVIVG01036301001 Vitis vinifera HOM05D005243 ORTHO05D006670 1.1e-13 82.0 271 28.0
Glyma.08G238400 Glycine max HOM05D005243 ORTHO05D006670 1.4e-13 81.6 255 27.8
Phvul.011G000750 Phaseolus vulgaris HOM05D005243 ORTHO05D006670 1.4e-13 81.6 272 28.3
SEGI_32857 Sequoiadendron giganteum HOM05D005243 ORTHO05D006670 1.4e-13 81.6 228 30.3
Mapoly0066s0111 Marchantia polymorpha HOM05D005243 ORTHO05D006670 1.9e-13 81.3 256 29.7
Peaxi162Scf00078g00625 Petunia axillaris HOM05D005243 ORTHO05D006670 1.9e-13 81.3 268 27.6
arahy.Tifrunner.gnm1.ann1.Q0SER0 Arachis hypogaea HOM05D005243 ORTHO05D006670 2.5e-13 80.9 253 28.9
A07p14160 Brassica napus HOM05D005243 ORTHO05D006670 2.5e-13 80.9 266 27.4
MSTRG.1596 Avicennia marina HOM05D005243 ORTHO05D006670 3.2e-13 80.5 260 27.3
FAN24G1286 Fragaria x ananassa HOM05D005243 ORTHO05D006670 3.2e-13 80.5 261 27.2
Aa31LG4G9150 Aethionema arabicum HOM05D005243 ORTHO05D006670 4.2e-13 80.1 253 28.5
FvH4_2g00910 Fragaria vesca HOM05D005243 ORTHO05D006670 4.2e-13 80.1 261 26.8
QL11p001747 Quercus lobata HOM05D005243 ORTHO05D006670 4.2e-13 80.1 255 27.1
FAN27G0682 Fragaria x ananassa HOM05D005243 ORTHO05D006670 5.5e-13 79.7 275 26.9
A09p41910 Brassica napus HOM05D005243 ORTHO05D006670 7.1e-13 79.3 272 27.2
C05p21940 Brassica napus HOM05D005243 ORTHO05D006670 7.1e-13 79.3 273 26.7
BolC5t30889H Brassica oleracea HOM05D005243 ORTHO05D006670 7.1e-13 79.3 273 26.7
BraA09t39679Z Brassica rapa HOM05D005243 ORTHO05D006670 7.1e-13 79.3 238 29.8
Carub.0001s2235 Capsella rubella HOM05D005243 ORTHO05D006670 7.1e-13 79.3 256 28.5
Migut.C01377 Erythranthe guttata HOM05D005243 ORTHO05D006670 7.1e-13 79.3 263 27.4
QL09p001863 Quercus lobata HOM05D005243 ORTHO05D006670 7.1e-13 79.3 255 27.1
VMungo1127G0343 Vigna mungo HOM05D005243 ORTHO05D006670 7.1e-13 79.3 314 27.1
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 1.2e-12 78.6 255 27.5
Hma1.2p1_0016F.1_g010690 Hydrangea macrophylla HOM05D005243 ORTHO05D006670 1.2e-12 78.6 228 29.8
TAR628G0538 Trochodendron aralioides HOM05D005243 ORTHO05D006670 1.2e-12 78.6 258 29.1
vmacro00940 Vaccinium macrocarpon HOM05D005243 ORTHO05D006670 1.2e-12 78.6 218 29.8
AUR62038530 Chenopodium quinoa HOM05D005243 ORTHO05D006670 2.1e-12 77.8 216 30.1
CsaV3_5G039920 Cucumis sativus L. HOM05D005243 ORTHO05D006670 2.1e-12 77.8 256 27.3
BraA07t29174Z Brassica rapa HOM05D005243 ORTHO05D006670 2.7e-12 77.4 281 27.0
Nitab4.5_0000213g0140 Nicotiana tabacum HOM05D005243 ORTHO05D006670 2.7e-12 77.4 256 27.3
Oeu039799.1 Olea europaea HOM05D005243 ORTHO05D006670 2.7e-12 77.4 261 28.0
MELO3C022172.2 Cucumis melo HOM05D005243 ORTHO05D006670 3.5e-12 77.0 256 27.0
MD05G1004400 Malus domestica HOM05D005243 ORTHO05D006670 3.5e-12 77.0 247 27.5
Potri.019G071900 Populus trichocarpa HOM05D005243 ORTHO05D006670 3.5e-12 77.0 266 28.6
Sc01g0000060 Simmondsia chinensis HOM05D005243 ORTHO05D006670 3.5e-12 77.0 228 28.9
Ah.05g170330 Amaranthus hybridus HOM05D005243 ORTHO05D006670 4.6e-12 76.6 258 28.7
AT1G22850 Arabidopsis thaliana HOM05D005243 ORTHO05D006670 4.6e-12 76.6 221 29.0
CAN.G14.57 Capsicum annuum HOM05D005243 ORTHO05D006670 4.6e-12 76.6 268 26.5
AUR62013377 Chenopodium quinoa HOM05D005243 ORTHO05D006670 4.6e-12 76.6 215 29.8
Sp1g20330 Schrenkiella parvula HOM05D005243 ORTHO05D006670 4.6e-12 76.6 256 26.6
FAN15G1820 Fragaria x ananassa HOM05D005243 ORTHO05D006670 6.0e-12 76.3 261 26.8
FAN20G0760 Fragaria x ananassa HOM05D005243 ORTHO05D006670 6.0e-12 76.3 261 26.8
Nitab4.5_0003510g0060 Nicotiana tabacum HOM05D005243 ORTHO05D006670 6.0e-12 76.3 259 27.0
Nitab4.5_0003723g0010 Nicotiana tabacum HOM05D005243 ORTHO05D006670 6.0e-12 76.3 255 27.1
TPR.G34108 Trifolium pratense HOM05D005243 ORTHO05D006670 6.0e-12 76.3 255 26.7
Duzib177G0679 Durio zibethinus HOM05D005243 ORTHO05D006670 7.9e-12 75.9 256 28.1
AL1G36390 Arabidopsis lyrata HOM05D005243 ORTHO05D006670 1.3e-11 75.1 216 29.6
ClCG08G001100 Citrullus lanatus HOM05D005243 ORTHO05D006670 1.3e-11 75.1 238 28.6
COL.COLO4_05201 Corchorus olitorius HOM05D005243 ORTHO05D006670 1.3e-11 75.1 220 27.3
Gohir.A13G115700 Gossypium hirsutum HOM05D005243 ORTHO05D006670 1.3e-11 75.1 256 27.7
Gorai.013G133200 Gossypium raimondii HOM05D005243 ORTHO05D006670 1.8e-11 74.7 220 27.7
CSS0034512 Camellia sinensis var. sinensis HOM05D005243 ORTHO05D006670 2.3e-11 74.3 255 26.3
Ciclev10021088m.g Citrus clementina HOM05D005243 ORTHO05D006670 2.3e-11 74.3 228 28.1
Dinv22107 Davidia involucrata HOM05D005243 ORTHO05D006670 3.0e-11 73.9 261 26.8
Lj3g0013498 Lotus japonicus HOM05D005243 ORTHO05D006670 3.0e-11 73.9 258 28.3
Medtr4g032670 Medicago truncatula HOM05D005243 ORTHO05D006670 3.0e-11 73.9 255 26.7
Nitab4.5_0002654g0010 Nicotiana tabacum HOM05D005243 ORTHO05D006670 3.0e-11 73.9 259 27.0
CiPaw.04G009500 Carya illinoinensis HOM05D005243 ORTHO05D006670 3.9e-11 73.6 251 27.9
Lalb_Chr01g0000051 Lupinus albus HOM05D005243 ORTHO05D006670 3.9e-11 73.6 268 28.4
C07p20840 Brassica napus HOM05D005243 ORTHO05D006670 5.1e-11 73.2 266 27.4
CiPaw.03G014500 Carya illinoinensis HOM05D005243 ORTHO05D006670 5.1e-11 73.2 251 26.7
Psat7g226280 Pisum sativum HOM05D005243 ORTHO05D006670 5.1e-11 73.2 255 26.3
PGR042G0435 Punica granatum HOM05D005243 ORTHO05D006670 5.1e-11 73.2 255 27.1
PSO017G4652 Papaver somniferum HOM05D005243 ORTHO05D006670 6.7e-11 72.8 255 27.8
PSO170G2000 Papaver somniferum HOM05D005243 ORTHO05D006670 6.7e-11 72.8 255 27.8
Sc01g0000200 Simmondsia chinensis HOM05D005243 ORTHO05D006670 1.5e-10 71.6 229 29.7
CARHR023190 Cardamine hirsuta HOM05D005243 ORTHO05D006670 1.9e-10 71.2 260 27.7
Eucgr.F02953 Eucalyptus grandis HOM05D005243 ORTHO05D006670 2.5e-10 70.9 245 27.8
Manes.18G116500 Manihot esculenta HOM05D005243 ORTHO05D006670 4.3e-10 70.1 255 26.3
PRCOL_00003647 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 4.3e-10 70.1 188 30.9
Oeu013910.2 Olea europaea HOM05D005243 ORTHO05D006670 5.7e-10 69.7 244 28.3
Rhsim12G0003000 Rhododendron simsii HOM05D005243 ORTHO05D006670 5.7e-10 69.7 257 25.3
BolC7t42617H Brassica oleracea HOM05D005243 ORTHO05D006670 7.4e-10 69.3 283 27.2
Haze_13955 Corylus avellana HOM05D005243 ORTHO05D006670 7.4e-10 69.3 219 27.9
DCAR_003509 Daucus carota HOM05D005243 ORTHO05D006670 7.4e-10 69.3 258 27.9
Lj7A420T23 Lonicera japonica HOM05D005243 ORTHO05D006670 9.7e-10 68.9 217 27.2
Thecc.08G178200 Theobroma cacao HOM05D005243 ORTHO05D006670 9.7e-10 68.9 279 25.8
Cre01.g000250 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D006670 1.3e-09 68.6 180 30.6
CANSAT21G2280 Cannabis sativa HOM05D005243 ORTHO05D006670 2.8e-09 67.4 228 28.1
Peaxi162Scf00818g00532 Petunia axillaris HOM05D005243 ORTHO05D006670 2.8e-09 67.4 212 28.3
Cc10_g08660 Coffea canephora HOM05D005243 ORTHO05D006670 4.8e-09 66.6 256 25.4
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 8.2e-09 65.9 298 26.8
Sabra19G0083700 Salix brachista HOM05D005243 ORTHO05D006670 1.1e-08 65.5 267 26.2
Potri.013G099600 Populus trichocarpa HOM05D005243 ORTHO05D006670 1.4e-08 65.1 250 26.0
TWI75G0078 Tripterygium wilfordii HOM05D005243 ORTHO05D006670 2.4e-08 64.3 277 25.6
Aqoxy5G00838 Aquilegia oxysepala HOM05D005243 ORTHO05D006670 6.9e-08 62.8 262 26.7
Pp3c14_11450 Physcomitrium patens HOM05D005243 ORTHO05D006670 6.9e-08 62.8 208 26.4
Gohir.D13G118900 Gossypium hirsutum HOM05D005243 ORTHO05D006670 9.0e-08 62.4 192 27.1
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 9.0e-08 62.4 272 27.9
ATR0796G011 Amborella trichopoda HOM05D005243 ORTHO05D006670 1.2e-07 62.0 313 25.2
Sabra13G0085400 Salix brachista HOM05D005243 ORTHO05D006670 1.2e-07 62.0 171 28.7
Actinidia15967 Actinidia chinensis HOM05D005243 ORTHO05D006670 1.5e-07 61.6 159 28.3
Ca_19709_v3 Cicer arietinum L. HOM05D005243 ORTHO05D006670 1.5e-07 61.6 169 28.4
FAN19G0510 Fragaria x ananassa HOM05D005243 ORTHO05D006670 2.0e-07 61.2 192 28.1
Nn5g27290 Nelumbo nucifera HOM05D005243 ORTHO05D006670 2.0e-07 61.2 250 25.2
Zm00001eb145530 Zea mays HOM05D005243 ORTHO05D006670 4.5e-07 60.1 184 28.8
CBR_g42160 Chara braunii HOM05D001530 ORTHO05D006670 2.2e-06 57.8 200 28.5


User provided reference genes

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