Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 5.1e-212 741.1 464 100.0
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 9.8e-62 241.9 279 54.1
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 4.0e-23 113.6 173 38.7
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 4.9e-21 106.7 269 32.0
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 1.9e-20 104.8 267 32.2
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 9.3e-20 102.4 282 30.5
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 6.7e-18 96.3 313 28.4
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 7.4e-17 92.8 175 36.6
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.5e-14 85.1 171 32.7
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 3.4e-14 84.0 171 32.7
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 9.9e-14 82.4 171 31.6
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 9.9e-14 82.4 171 31.0
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 1.3e-13 82.0 178 32.6
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.7e-13 81.6 174 33.9
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 2.2e-13 81.3 265 29.4
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 4.9e-13 80.1 269 29.7
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 6.4e-13 79.7 168 30.4
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 6.4e-13 79.7 198 30.8
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.1e-12 79.0 175 31.4
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.1e-12 79.0 174 31.0
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.1e-12 79.0 168 31.0
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 1.4e-12 78.6 168 31.5
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.9e-12 78.2 273 28.9
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 1.9e-12 78.2 171 31.0
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 1.9e-12 78.2 189 29.6
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.4e-12 77.8 172 31.4
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 3.2e-12 77.4 175 30.9
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.2e-12 77.0 168 31.0
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.2e-12 77.0 168 31.0
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 4.2e-12 77.0 184 30.4
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 4.2e-12 77.0 175 30.3
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 5.5e-12 76.6 178 30.9
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 5.5e-12 76.6 178 30.9
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 5.5e-12 76.6 178 30.9
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 5.5e-12 76.6 178 30.9
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 5.5e-12 76.6 178 30.9
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 5.5e-12 76.6 168 30.4
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 7.1e-12 76.3 168 31.0
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 9.3e-12 75.9 179 30.7
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.2e-11 75.5 174 31.0
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.2e-11 75.5 171 32.2
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 1.6e-11 75.1 176 31.2
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 1.6e-11 75.1 168 30.4
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.6e-11 75.1 168 30.4
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 2.1e-11 74.7 176 31.2
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.1e-11 74.7 168 31.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 2.1e-11 74.7 168 31.0
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 2.1e-11 74.7 168 30.4
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 2.1e-11 74.7 175 29.7
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 2.1e-11 74.7 172 29.1
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 2.1e-11 74.7 175 29.1
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 2.1e-11 74.7 168 29.2
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 2.7e-11 74.3 267 26.2
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.5e-11 73.9 169 29.6
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 3.5e-11 73.9 173 28.9
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 3.5e-11 73.9 168 31.5
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.5e-11 73.9 178 32.0
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.6e-11 73.6 175 30.3
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 4.6e-11 73.6 168 31.0
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 6.0e-11 73.2 76 44.7
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 6.0e-11 73.2 171 31.0
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 6.0e-11 73.2 72 48.6
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 6.0e-11 73.2 72 48.6
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 6.0e-11 73.2 72 48.6
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 6.0e-11 73.2 171 28.7
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 6.0e-11 73.2 174 29.9
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 6.0e-11 73.2 191 27.7
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 7.9e-11 72.8 176 28.4
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 7.9e-11 72.8 168 29.2
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 1.0e-10 72.4 171 31.6
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.0e-10 72.4 175 30.3
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.0e-10 72.4 173 29.5
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.3e-10 72.0 72 45.8
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 1.3e-10 72.0 168 29.2
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.3e-10 72.0 168 27.4
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.3e-10 72.0 168 28.0
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.3e-10 72.0 168 26.8
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.8e-10 71.6 174 29.9
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.8e-10 71.6 174 29.9
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.8e-10 71.6 174 29.9
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 3.0e-10 70.9 168 27.4
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 3.9e-10 70.5 171 29.8
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 3.9e-10 70.5 168 28.6
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 5.1e-10 70.1 176 27.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 5.1e-10 70.1 168 28.6
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 8.7e-10 69.3 175 30.9
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 8.7e-10 69.3 174 27.6
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.1e-09 68.9 175 30.9
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.1e-09 68.9 175 30.9
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.1e-09 68.9 172 27.9
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 1.5e-09 68.6 172 27.9
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 1.5e-09 68.6 175 30.3
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.9e-09 68.2 173 27.2
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 3.3e-09 67.4 179 29.6
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 3.3e-09 67.4 168 28.6
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 5.6e-09 66.6 152 28.3
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 5.6e-09 66.6 168 28.0
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 5.6e-09 66.6 265 27.5
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 6.2e-08 63.2 171 28.1
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.8e-07 61.6 169 26.0
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 2.4e-07 61.2 169 27.8
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 6.9e-07 59.7 172 25.6
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 5.8e-06 56.6 46 58.7


User provided reference genes

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