Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g680100 Chlamydomonas reinhardtii HOM05D007029 ORTHO05D008258 2.5e-98 362.1 182 100.0
MCO07G593 Micromonas commoda HOM05D007029 ORTHO05D008258 3.4e-42 175.6 159 58.5
Pp3c10_14520 Physcomitrium patens HOM05D007029 ORTHO05D008258 1.6e-39 166.8 154 51.9
Mapoly0056s0124 Marchantia polymorpha HOM05D007029 ORTHO05D008258 2.1e-39 166.4 154 54.5
Psat6g031920 Pisum sativum HOM05D007029 ORTHO05D008258 2.1e-39 166.4 188 47.3
MELO3C003643.2 Cucumis melo HOM05D007029 ORTHO05D008258 2.3e-38 162.9 162 50.0
Phvul.001G057900 Phaseolus vulgaris HOM05D007029 ORTHO05D008258 3.0e-38 162.5 183 46.4
Sed0023533 Sechium edule HOM05D007029 ORTHO05D008258 3.0e-38 162.5 162 50.0
ATR0626G398 Amborella trichopoda HOM05D007029 ORTHO05D008258 3.9e-38 162.2 158 51.3
Ca_12881_v3 Cicer arietinum L. HOM05D007029 ORTHO05D008258 3.9e-38 162.2 159 50.3
Migut.A00446 Erythranthe guttata HOM05D007029 ORTHO05D008258 3.9e-38 162.2 188 46.8
Glyma.14G132800 Glycine max HOM05D007029 ORTHO05D008258 1.1e-37 160.6 178 46.1
SalBow4G2612 Salvia bowleyana HOM05D007029 ORTHO05D008258 1.1e-37 160.6 158 52.5
TPR.G12034 Trifolium pratense HOM05D007029 ORTHO05D008258 1.5e-37 160.2 159 51.6
CBR_g21129 Chara braunii HOM05D007029 ORTHO05D008258 3.3e-37 159.1 158 53.8
Cc06_g08830 Coffea canephora HOM05D007029 ORTHO05D008258 5.6e-37 158.3 176 47.7
Manes.03G086800 Manihot esculenta HOM05D007029 ORTHO05D008258 1.2e-36 157.1 177 49.2
unitig_748.g7379 Utricularia gibba HOM05D007029 ORTHO05D008258 1.2e-36 157.1 164 48.2
Lj5g0005194 Lotus japonicus HOM05D007029 ORTHO05D008258 1.6e-36 156.8 159 48.4
MD15G1110100 Malus domestica HOM05D007029 ORTHO05D008258 2.8e-36 156.0 162 49.4
MSTRG.25772 Avicennia marina HOM05D007029 ORTHO05D008258 3.6e-36 155.6 172 48.8
Potri.006G278500 Populus trichocarpa HOM05D007029 ORTHO05D008258 4.7e-36 155.2 177 46.9
C09p66200 Brassica napus HOM05D007029 ORTHO05D008258 6.2e-36 154.8 162 51.9
BolC9t59441H Brassica oleracea HOM05D007029 ORTHO05D008258 6.2e-36 154.8 162 51.9
Aa31LG3G16490 Aethionema arabicum HOM05D007029 ORTHO05D008258 8.1e-36 154.5 162 53.1
Cfa013252 Carpinus fangiana HOM05D007029 ORTHO05D008258 8.1e-36 154.5 185 45.4
CARHR202690 Cardamine hirsuta HOM05D007029 ORTHO05D008258 1.1e-35 154.1 162 51.2
Sabra06G0216100 Salix brachista HOM05D007029 ORTHO05D008258 1.1e-35 154.1 162 48.8
BcaB08g37096 Brassica carinata HOM05D007029 ORTHO05D008258 1.4e-35 153.7 162 51.9
PSO144G0063 Papaver somniferum HOM05D007029 ORTHO05D008258 1.4e-35 153.7 185 46.5
AL6G21140 Arabidopsis lyrata HOM05D007029 ORTHO05D008258 1.8e-35 153.3 162 51.2
PGR044G0703 Punica granatum HOM05D007029 ORTHO05D008258 1.8e-35 153.3 175 44.0
AT5G10620 Arabidopsis thaliana HOM05D007029 ORTHO05D008258 2.3e-35 152.9 162 51.2
BolC9t59447H Brassica oleracea HOM05D007029 ORTHO05D008258 2.3e-35 152.9 162 51.2
Prupe.1G462300 Prunus persica HOM05D007029 ORTHO05D008258 2.3e-35 152.9 162 48.8
CANSAT25G3139 Cannabis sativa HOM05D007029 ORTHO05D008258 3.1e-35 152.5 158 50.0
CAN.G947.13 Capsicum annuum HOM05D007029 ORTHO05D008258 3.1e-35 152.5 162 46.9
Duzib168G0066 Durio zibethinus HOM05D007029 ORTHO05D008258 3.1e-35 152.5 162 47.5
Nitab4.5_0001159g0100 Nicotiana tabacum HOM05D007029 ORTHO05D008258 3.1e-35 152.5 162 48.1
Nitab4.5_0003963g0040 Nicotiana tabacum HOM05D007029 ORTHO05D008258 3.1e-35 152.5 162 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1595 Anthoceros agrestis HOM05D007029 ORTHO05D008258 5.2e-35 151.8 152 51.3
CSS0017002 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 5.2e-35 151.8 162 48.1
CSS0043998 Camellia sinensis var. sinensis HOM05D007029 ORTHO05D008258 5.2e-35 151.8 162 48.1
Nn8g40869 Nelumbo nucifera HOM05D007029 ORTHO05D008258 5.2e-35 151.8 162 48.8
Sp6g32830 Schrenkiella parvula HOM05D007029 ORTHO05D008258 5.2e-35 151.8 162 51.2
Eucgr.C03998 Eucalyptus grandis HOM05D007029 ORTHO05D008258 6.8e-35 151.4 179 44.7
Aqoxy7G02769 Aquilegia oxysepala HOM05D007029 ORTHO05D008258 1.2e-34 150.6 162 50.0
CsaV3_3G046940 Cucumis sativus L. HOM05D007029 ORTHO05D008258 1.5e-34 150.2 182 44.0
Gorai.010G123900 Gossypium raimondii HOM05D007029 ORTHO05D008258 1.5e-34 150.2 162 48.8
Lalb_Chr24g0402421 Lupinus albus HOM05D007029 ORTHO05D008258 1.5e-34 150.2 162 46.9
C09p66410 Brassica napus HOM05D007029 ORTHO05D008258 2.0e-34 149.8 179 47.5
Thhalv10014744m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 2.0e-34 149.8 162 50.0
Sopen12g032190 Solanum pennellii HOM05D007029 ORTHO05D008258 2.0e-34 149.8 159 47.2
BraA10t44748Z Brassica rapa HOM05D007029 ORTHO05D008258 2.6e-34 149.4 162 50.0
TAR626G0900 Trochodendron aralioides HOM05D007029 ORTHO05D008258 2.6e-34 149.4 163 50.3
C09p66570 Brassica napus HOM05D007029 ORTHO05D008258 4.4e-34 148.7 179 47.5
HanXRQChr14g0454741 Helianthus annuus HOM05D007029 ORTHO05D008258 4.4e-34 148.7 155 46.5
Os04g0606900 Oryza sativa ssp. japonica HOM05D007029 ORTHO05D008258 4.4e-34 148.7 159 50.9
THA.LOC104799006 Tarenaya hassleriana HOM05D007029 ORTHO05D008258 5.8e-34 148.3 162 48.8
A10p26970 Brassica napus HOM05D007029 ORTHO05D008258 7.6e-34 147.9 154 50.0
Thecc.09G005000 Theobroma cacao HOM05D007029 ORTHO05D008258 9.9e-34 147.5 162 47.5
FAN20G2423 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.3e-33 147.1 162 45.7
Zm00001eb071440 Zea mays HOM05D007029 ORTHO05D008258 1.3e-33 147.1 198 44.9
Lj7A749T66 Lonicera japonica HOM05D007029 ORTHO05D008258 1.7e-33 146.7 160 47.5
RcHm_v2.0_Chr6g0312221 Rosa chinensis HOM05D007029 ORTHO05D008258 1.7e-33 146.7 162 45.7
FvH4_2g30670 Fragaria vesca HOM05D007029 ORTHO05D008258 2.2e-33 146.4 162 45.7
GSVIVG01035546001 Vitis vinifera HOM05D007029 ORTHO05D008258 3.8e-33 145.6 154 47.4
Cpa.g.sc10.205 Carica papaya HOM05D007029 ORTHO05D008258 6.4e-33 144.8 180 45.0
Sc09g0007900 Simmondsia chinensis HOM05D007029 ORTHO05D008258 6.4e-33 144.8 159 47.2
SMO145G0271 Selaginella moellendorffii HOM05D007029 ORTHO05D008258 1.1e-32 144.1 156 47.4
Hund03277 Selenicereus undatus HOM05D007029 ORTHO05D008258 1.1e-32 144.1 162 48.1
Sc09g0007640 Simmondsia chinensis HOM05D007029 ORTHO05D008258 1.1e-32 144.1 159 47.2
Glyma.17G201400 Glycine max HOM05D007029 ORTHO05D008258 1.9e-32 143.3 136 51.5
arahy.Tifrunner.gnm1.ann1.MMLL3W Arachis hypogaea HOM05D007029 ORTHO05D008258 9.2e-32 141.0 159 45.3
FAN24G0248 Fragaria x ananassa HOM05D007029 ORTHO05D008258 1.2e-31 140.6 162 43.8
Atru.chr7.2665 Acer truncatum HOM05D007029 ORTHO05D008258 1.1e-29 134.0 164 45.1
CiPaw.07G214600 Carya illinoinensis HOM05D007029 ORTHO05D008258 1.5e-29 133.7 183 40.4
Gohir.A06G106900 Gossypium hirsutum HOM05D007029 ORTHO05D008258 7.3e-29 131.3 149 47.0
PGSC0003DMG400029282 Solanum tuberosum HOM05D007029 ORTHO05D008258 2.1e-28 129.8 152 44.1
ClCG05G017440 Citrullus lanatus HOM05D007029 ORTHO05D008258 6.2e-28 128.3 143 46.9
EL10Ac2g03716 Beta vulgaris HOM05D007029 ORTHO05D008258 1.4e-27 127.1 149 45.6
QL12p024672 Quercus lobata HOM05D007029 ORTHO05D008258 1.4e-27 127.1 149 43.6
TWI63G1096 Tripterygium wilfordii HOM05D007029 ORTHO05D008258 3.1e-27 125.9 171 39.8
PRCOL_00001289 Prasinoderma coloniale HOM05D007029 ORTHO05D008258 1.5e-26 123.6 138 47.1
Oeu059287.2 Olea europaea HOM05D007029 ORTHO05D008258 9.9e-26 120.9 152 42.1
arahy.Tifrunner.gnm1.ann1.J6QZET Arachis hypogaea HOM05D007029 ORTHO05D008258 1.7e-25 120.2 146 43.8
Carub.0006s0910 Capsella rubella HOM05D007029 ORTHO05D008258 3.8e-25 119.0 141 48.2
SGA_v2.0_scaffold27G11664 Striga asiatica HOM05D007029 ORTHO05D008258 6.4e-25 118.2 241 34.0
CDE04G2652 Ceratophyllum demersum HOM05D000178 ORTHO05D000229 2.4e-24 116.3 109 54.1
Ciclev10009808m.g Citrus clementina HOM05D007029 ORTHO05D008258 1.2e-23 114.0 159 40.3
C09p66490 Brassica napus HOM05D007029 ORTHO05D008258 2.1e-23 113.2 89 64.0
Oeu038914.4 Olea europaea HOM05D000263 ORTHO05D008258 3.9e-22 109.0 123 44.7
SEGI_22347 Sequoiadendron giganteum HOM05D007029 ORTHO05D008258 5.1e-22 108.6 128 41.4
Solyc12g096330.3 Solanum lycopersicum HOM05D007029 ORTHO05D008258 1.9e-21 106.7 88 56.8
MBI13_g31530_MAGBIO Magnolia biondii HOM05D007029 ORTHO05D008258 3.3e-21 105.9 192 38.5
COL.COLO4_18612 Corchorus olitorius HOM05D007029 ORTHO05D008258 1.4e-19 100.5 118 42.4
Dinv09200 Davidia involucrata HOM05D007029 ORTHO05D008258 1.2e-18 97.4 134 41.0
Lsat_1_v5_gn_2_109441 Lactuca sativa HOM05D007029 ORTHO05D008258 1.3e-17 94.0 119 40.3
Peaxi162Scf00459g00835 Petunia axillaris HOM05D007029 ORTHO05D008258 8.4e-17 91.3 97 49.5
COL.COLO4_02059 Corchorus olitorius HOM05D007029 ORTHO05D008258 2.4e-16 89.7 155 32.9
Hma1.2p1_0443F.1_g154050 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 1.2e-15 87.4 75 57.3
Haze_08560 Corylus avellana HOM05D007029 ORTHO05D008258 2.1e-15 86.7 149 37.6
Thhalv10000503m.g Eutrema salsugineum HOM05D007029 ORTHO05D008258 2.1e-15 86.7 129 41.1
Actinidia22252 Actinidia chinensis HOM05D007029 ORTHO05D008258 7.9e-15 84.7 124 38.7
Oeu059279.1 Olea europaea HOM05D007029 ORTHO05D008258 1.3e-14 84.0 97 46.4
VMungo0647G0111 Vigna mungo HOM05D007029 ORTHO05D008258 8.7e-14 81.3 120 38.3
Medtr1g010000 Medicago truncatula HOM05D007029 ORTHO05D008258 2.5e-13 79.7 96 43.8
Ah.10g033770 Amaranthus hybridus HOM05D007029 ORTHO05D008258 1.4e-11 73.9 119 40.3
C09p66660 Brassica napus HOM05D007029 ORTHO05D008258 3.1e-11 72.8 118 37.3
AUR62020630 Chenopodium quinoa HOM05D007029 ORTHO05D008258 6.9e-11 71.6 98 38.8
AUR62038752 Chenopodium quinoa HOM05D007029 ORTHO05D008258 9.0e-11 71.2 98 38.8
Gohir.D06G109100 Gossypium hirsutum HOM05D007029 ORTHO05D008258 4.5e-10 68.9 99 39.4
Hma1.2p1_0443F.1_g154060 Hydrangea macrophylla HOM05D007029 ORTHO05D008258 8.4e-09 64.7 45 64.4
CDE07G1585 Ceratophyllum demersum HOM05D003168 ORTHO05D003590 1.9e-08 63.5 45 64.4


User provided reference genes

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