Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g676645 Chlamydomonas reinhardtii HOM05D016803 ORTHO05D016545 4.0e-90 334.7 167 100.0
CBR_g23763 Chara braunii HOM05D016803 ORTHO05D016545 1.3e-24 117.1 163 39.3
PRCOL_00002219 Prasinoderma coloniale HOM05D016803 ORTHO05D016545 2.5e-23 112.8 158 38.0
Zm00001eb093450 Zea mays HOM05D000227 ORTHO05D000451 1.8e-13 80.1 143 34.3
Zm00001eb196020 Zea mays HOM05D000227 ORTHO05D000451 5.2e-13 78.6 143 33.6
SMO169G0076 Selaginella moellendorffii HOM05D000227 ORTHO05D000451 5.7e-12 75.1 145 31.0
Lj1g0018674 Lotus japonicus HOM05D000227 ORTHO05D000451 7.5e-12 74.7 144 29.9
Nitab4.5_0002724g0060 Nicotiana tabacum HOM05D000227 ORTHO05D000451 9.7e-12 74.3 143 30.8
Gorai.008G292900 Gossypium raimondii HOM05D000227 ORTHO05D000451 8.2e-11 71.2 148 28.4
HanXRQChr05g0134471 Helianthus annuus HOM05D000227 ORTHO05D000451 8.2e-11 71.2 143 30.1
HPP92_001701 Vanilla planifolia HOM05D000227 ORTHO05D000451 8.2e-11 71.2 143 29.4
RcHm_v2.0_Chr1g0364931 Rosa chinensis HOM05D000227 ORTHO05D000451 1.8e-10 70.1 156 29.5
Cpa.g.sc33.178 Carica papaya HOM05D000227 ORTHO05D000451 3.1e-10 69.3 143 30.1
VMungo0540G0537 Vigna mungo HOM05D000227 ORTHO05D000451 3.1e-10 69.3 144 29.2
Os11g0134400 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 4.1e-10 68.9 144 31.2
FvH4_7g20700 Fragaria vesca HOM05D000227 ORTHO05D000451 5.3e-10 68.6 156 28.8
FAN01G2463 Fragaria x ananassa HOM05D000227 ORTHO05D000451 5.3e-10 68.6 158 30.4
FAN01G2988 Fragaria x ananassa HOM05D000227 ORTHO05D000451 5.3e-10 68.6 158 30.4
BcaB06g27705 Brassica carinata HOM05D000227 ORTHO05D000451 9.1e-10 67.8 143 29.4
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 9.1e-10 67.8 152 28.9
Cre03.g178350 Chlamydomonas reinhardtii HOM05D000227 ORTHO05D000451 1.6e-09 67.0 146 29.5
BcaC05g27882 Brassica carinata HOM05D000227 ORTHO05D001491 4.5e-09 65.5 146 29.5
C05p38900 Brassica napus HOM05D000227 ORTHO05D001491 4.5e-09 65.5 146 29.5
BolC5t32632H Brassica oleracea HOM05D000227 ORTHO05D001491 4.5e-09 65.5 146 29.5
Cre03.g150300 Chlamydomonas reinhardtii HOM05D000227 ORTHO05D000451 4.5e-09 65.5 148 29.1
Thhalv10009363m.g Eutrema salsugineum HOM05D000227 ORTHO05D001491 4.5e-09 65.5 146 29.5
Thhalv10014926m.g Eutrema salsugineum HOM05D000227 ORTHO05D000451 4.5e-09 65.5 143 27.3
A05p25050 Brassica napus HOM05D000227 ORTHO05D001491 5.9e-09 65.1 146 29.5
BraA05t21387Z Brassica rapa HOM05D000227 ORTHO05D001491 5.9e-09 65.1 146 29.5
CBR_g57709 Chara braunii HOM05D000227 ORTHO05D000451 5.9e-09 65.1 152 32.2
Atru.chr6.1614 Acer truncatum HOM05D000227 ORTHO05D001491 7.7e-09 64.7 150 28.7
AagrBONN_evm.TU.Sc2ySwM_117.1146 Anthoceros agrestis HOM05D000227 ORTHO05D000451 7.7e-09 64.7 142 31.0
Glyma.19G244300 Glycine max HOM05D000227 ORTHO05D000451 7.7e-09 64.7 147 27.2
Sp1g27930 Schrenkiella parvula HOM05D000227 ORTHO05D001491 7.7e-09 64.7 146 29.5
BcaB03g13746 Brassica carinata HOM05D000227 ORTHO05D001491 1.0e-08 64.3 146 28.8
Ciclev10002732m.g Citrus clementina HOM05D000227 ORTHO05D001491 1.0e-08 64.3 150 28.0
CARHR031620 Cardamine hirsuta HOM05D000227 ORTHO05D001491 1.3e-08 63.9 148 31.1
Duzib205G1182 Durio zibethinus HOM05D000227 ORTHO05D001491 1.3e-08 63.9 161 27.3
AT1G32250 Arabidopsis thaliana HOM05D000227 ORTHO05D001491 1.7e-08 63.5 146 30.1
Carub.0001s3058 Capsella rubella HOM05D000227 ORTHO05D001491 1.7e-08 63.5 146 29.5
Duzib068G1096 Durio zibethinus HOM05D000227 ORTHO05D001491 1.7e-08 63.5 163 29.4
Cpa.g.sc90.10 Carica papaya HOM05D000227 ORTHO05D001491 2.2e-08 63.2 165 27.3
Glyma.03G246800 Glycine max HOM05D000227 ORTHO05D000451 2.2e-08 63.2 144 26.4
Lalb_Chr01g0017141 Lupinus albus HOM05D000227 ORTHO05D000451 2.2e-08 63.2 143 28.7
AL1G46400 Arabidopsis lyrata HOM05D000227 ORTHO05D001491 2.9e-08 62.8 146 29.5
Lalb_Chr09g0334131 Lupinus albus HOM05D000227 ORTHO05D001491 2.9e-08 62.8 160 26.9
PSO675G3845 Papaver somniferum HOM05D000227 ORTHO05D004725 2.9e-08 62.8 152 27.0
C03p52840 Brassica napus HOM05D000227 ORTHO05D000451 3.8e-08 62.4 151 25.2
BolC3t17552H Brassica oleracea HOM05D000227 ORTHO05D000451 3.8e-08 62.4 151 25.2
FvH4_7g20701 Fragaria vesca HOM05D000227 ORTHO05D000451 3.8e-08 62.4 146 28.1
HanXRQChr14g0432121 Helianthus annuus HOM05D000227 ORTHO05D000451 3.8e-08 62.4 145 27.6
SMO351G0484 Selaginella moellendorffii HOM05D016803 ORTHO05D016545 3.8e-08 62.4 158 29.1
Actinidia03348 Actinidia chinensis HOM05D000227 ORTHO05D001491 5.0e-08 62.0 160 28.8
PGSC0003DMG400047233 Solanum tuberosum HOM05D000227 ORTHO05D000451 5.0e-08 62.0 125 28.8
CBR_g41759 Chara braunii HOM05D000227 ORTHO05D000451 6.5e-08 61.6 151 31.1
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 6.5e-08 61.6 145 24.8
HPP92_020345 Vanilla planifolia HOM05D000227 ORTHO05D000451 6.5e-08 61.6 145 24.8
Aa31LG2G13750 Aethionema arabicum HOM05D000227 ORTHO05D001491 1.1e-07 60.8 146 28.1
Potri.001G138000 Populus trichocarpa HOM05D000227 ORTHO05D001491 1.5e-07 60.5 150 26.0
TAR636G3615 Trochodendron aralioides HOM05D000227 ORTHO05D001491 1.5e-07 60.5 160 27.5
EL10Ac3g05801 Beta vulgaris HOM05D000227 ORTHO05D004136 1.9e-07 60.1 142 29.6
PSO541G6342 Papaver somniferum HOM05D000227 ORTHO05D004725 1.9e-07 60.1 159 27.0
Sed0012807 Sechium edule HOM05D000227 ORTHO05D001491 1.9e-07 60.1 150 27.3
Haze_27576 Corylus avellana HOM05D000227 ORTHO05D000451 2.5e-07 59.7 147 26.5
Eucgr.H03405 Eucalyptus grandis HOM05D000227 ORTHO05D000451 2.5e-07 59.7 149 25.5
Medtr7g115040 Medicago truncatula HOM05D000227 ORTHO05D000451 2.5e-07 59.7 144 26.4
TAR629G3503 Trochodendron aralioides HOM05D000227 ORTHO05D001491 2.5e-07 59.7 150 27.3
Aqoxy2G03043 Aquilegia oxysepala HOM05D000227 ORTHO05D000451 3.2e-07 59.3 145 23.4
TPR.G7012 Trifolium pratense HOM05D000227 ORTHO05D000451 3.2e-07 59.3 139 29.5
HanXRQChr17g0538101 Helianthus annuus HOM05D000227 ORTHO05D001491 4.2e-07 58.9 162 29.0
Gohir.A08G154200 Gossypium hirsutum HOM05D000227 ORTHO05D001491 5.5e-07 58.5 165 26.1
Hma1.2p1_0870F.1_g230840 Hydrangea macrophylla HOM05D000227 ORTHO05D001491 5.5e-07 58.5 160 26.2
Potri.003G095700 Populus trichocarpa HOM05D000227 ORTHO05D001491 5.5e-07 58.5 150 24.7
Prupe.7G133900 Prunus persica HOM05D000227 ORTHO05D004725 5.5e-07 58.5 149 26.8
CiPaw.12G067400 Carya illinoinensis HOM05D000227 ORTHO05D001491 7.2e-07 58.2 150 26.0
Potri.005G052800 Populus trichocarpa HOM05D000227 ORTHO05D000451 7.2e-07 58.2 150 24.0
AT1G66410 Arabidopsis thaliana HOM05D000227 ORTHO05D000451 9.4e-07 57.8 119 28.6
Cfa024840 Carpinus fangiana HOM05D000227 ORTHO05D004136 9.4e-07 57.8 161 30.4
Ciclev10002774m.g Citrus clementina HOM05D000227 ORTHO05D000451 9.4e-07 57.8 148 23.6
PGR004G1071 Punica granatum HOM05D000227 ORTHO05D000451 9.4e-07 57.8 145 25.5
TWI60G1500 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 9.4e-07 57.8 150 25.3
MSTRG.13741 Avicennia marina HOM05D000227 ORTHO05D001491 1.2e-06 57.4 162 27.2
CsaV3_4G023180 Cucumis sativus L. HOM05D000227 ORTHO05D000451 1.2e-06 57.4 119 28.6
Oeu031205.1 Olea europaea HOM05D000227 ORTHO05D000451 1.2e-06 57.4 119 28.6
HPP92_021191 Vanilla planifolia HOM05D000227 ORTHO05D000451 1.2e-06 57.4 119 28.6
CBR_g41807 Chara braunii HOM05D000227 ORTHO05D000451 1.6e-06 57.0 148 27.7
Cc08_g03390 Coffea canephora HOM05D000227 ORTHO05D001491 1.6e-06 57.0 150 26.0
SabraUnG0005800 Salix brachista HOM05D000227 ORTHO05D000451 1.6e-06 57.0 146 25.3
Sopen08g025070 Solanum pennellii HOM05D000227 ORTHO05D001491 1.6e-06 57.0 160 25.6
TWI15G1153 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 1.6e-06 57.0 150 24.7
Atru.chr2.808 Acer truncatum HOM05D000227 ORTHO05D000451 2.1e-06 56.6 145 23.4
Os11g0586200 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 2.1e-06 56.6 141 27.0
QL12p001321 Quercus lobata HOM05D000227 ORTHO05D001491 2.1e-06 56.6 145 26.9
Aqoxy5G00386 Aquilegia oxysepala HOM05D000227 ORTHO05D000451 2.7e-06 56.2 130 23.1
Lj1P537T9 Lonicera japonica HOM05D000227 ORTHO05D000451 2.7e-06 56.2 147 24.5
PGSC0003DMG400013390 Solanum tuberosum HOM05D000227 ORTHO05D000451 2.7e-06 56.2 154 22.7
PGSC0003DMG400014797 Solanum tuberosum HOM05D000227 ORTHO05D001491 2.7e-06 56.2 160 25.6
TWI79G0153 Tripterygium wilfordii HOM05D000227 ORTHO05D001491 2.7e-06 56.2 148 27.7
GSVIVG01021797001 Vitis vinifera HOM05D000227 ORTHO05D000451 2.7e-06 56.2 148 23.6
ECA246G3425 Erigeron canadensis HOM05D000227 ORTHO05D001491 3.6e-06 55.8 162 27.8
Nitab4.5_0000529g0080 Nicotiana tabacum HOM05D000227 ORTHO05D001491 3.6e-06 55.8 160 25.0
PGSC0003DMG400021068 Solanum tuberosum HOM05D000227 ORTHO05D000451 3.6e-06 55.8 119 28.6
Ah.07g208190 Amaranthus hybridus HOM05D000227 ORTHO05D004136 4.7e-06 55.5 144 25.7
MSTRG.13490 Avicennia marina HOM05D000227 ORTHO05D001491 4.7e-06 55.5 147 29.9
Glyma.04G144800 Glycine max HOM05D000227 ORTHO05D001491 4.7e-06 55.5 149 28.2
Lsat_1_v5_gn_3_19641 Lactuca sativa HOM05D002234 ORTHO05D001491 4.7e-06 55.5 162 27.8
Lalb_Chr09g0323161 Lupinus albus HOM05D000227 ORTHO05D004725 4.7e-06 55.5 156 25.0
Rhsim09G0115200 Rhododendron simsii HOM05D000227 ORTHO05D001491 4.7e-06 55.5 144 29.9
CBR_g41798 Chara braunii HOM05D000227 ORTHO05D000451 6.1e-06 55.1 128 27.3
Os12g0603800 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 6.1e-06 55.1 159 25.2
Aqoxy2G00047 Aquilegia oxysepala HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
Ca_04719_v3 Cicer arietinum L. HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
Ca_04720_v3 Cicer arietinum L. HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
MELO3C014698.2 Cucumis melo HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
Glyma.13G074800 Glycine max HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
Lalb_Chr05g0225781 Lupinus albus HOM05D000227 ORTHO05D001491 8.0e-06 54.7 160 25.0
Lalb_Chr21g0317381 Lupinus albus HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
MD16G1051200 Malus domestica HOM05D000227 ORTHO05D001491 8.0e-06 54.7 144 28.5
Medtr0168s0120 Medicago truncatula HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
Nitab4.5_0000062g0390 Nicotiana tabacum HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7
Psat4g113160 Pisum sativum HOM05D000227 ORTHO05D001491 8.0e-06 54.7 132 28.0
Solyc03g005240.2 Solanum lycopersicum HOM05D000227 ORTHO05D000451 8.0e-06 54.7 151 24.5
Sopen03g001270 Solanum pennellii HOM05D000227 ORTHO05D000451 8.0e-06 54.7 150 24.7
Zm00001eb395750 Zea mays HOM05D000227 ORTHO05D000451 8.0e-06 54.7 119 27.7


User provided reference genes

Program Settings