Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 9.9e-284 979.5 533 100.0
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.9e-85 320.9 505 38.4
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 2.3e-83 313.9 505 38.2
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 4.0e-83 313.2 504 37.9
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 8.9e-83 312.0 505 38.6
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 8.9e-83 312.0 505 37.8
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 8.9e-83 312.0 505 37.8
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.2e-82 311.6 509 38.5
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.5e-82 311.2 505 38.4
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 1.5e-82 311.2 505 37.6
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.5e-82 311.2 505 38.2
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 2.6e-82 310.5 505 38.0
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 2.6e-82 310.5 505 38.0
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 2.6e-82 310.5 505 38.4
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 2.6e-82 310.5 510 38.0
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.4e-82 310.1 505 38.2
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 5.7e-82 309.3 505 37.6
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 5.7e-82 309.3 505 38.4
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 5.7e-82 309.3 505 38.0
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 9.8e-82 308.5 505 37.6
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 9.8e-82 308.5 505 38.2
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 1.3e-81 308.1 506 37.5
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.3e-81 308.1 505 38.0
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 1.3e-81 308.1 505 37.8
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 2.2e-81 307.4 505 38.0
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 2.2e-81 307.4 505 38.0
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 2.2e-81 307.4 505 37.6
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 2.9e-81 307.0 505 37.4
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 2.9e-81 307.0 505 37.6
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 3.7e-81 306.6 505 37.0
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 4.9e-81 306.2 499 38.1
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 4.9e-81 306.2 505 37.0
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 4.9e-81 306.2 505 38.0
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 4.9e-81 306.2 507 37.9
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.3e-81 305.8 505 37.8
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 8.3e-81 305.4 505 37.2
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 8.3e-81 305.4 499 37.9
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 8.3e-81 305.4 505 38.4
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 8.3e-81 305.4 505 37.2
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 1.4e-80 304.7 505 38.2
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 1.8e-80 304.3 505 37.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.8e-80 304.3 505 37.4
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 1.8e-80 304.3 505 37.4
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 1.8e-80 304.3 506 37.4
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 1.8e-80 304.3 497 37.8
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 2.4e-80 303.9 505 37.4
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.4e-80 303.9 505 36.8
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 2.4e-80 303.9 505 36.8
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 2.4e-80 303.9 505 36.8
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 2.4e-80 303.9 499 37.5
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.2e-80 303.5 493 38.5
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.2e-80 303.5 505 37.6
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 4.1e-80 303.1 505 37.8
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 4.1e-80 303.1 499 37.7
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 5.4e-80 302.8 505 36.6
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 5.4e-80 302.8 505 37.4
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 5.4e-80 302.8 493 37.3
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 7.0e-80 302.4 505 37.0
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 9.2e-80 302.0 499 38.1
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.2e-79 301.6 505 37.2
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.2e-79 301.6 505 37.2
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 1.2e-79 301.6 505 36.8
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.2e-79 301.6 505 37.4
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 1.2e-79 301.6 505 37.2
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 1.2e-79 301.6 499 37.3
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 1.6e-79 301.2 505 37.4
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 1.6e-79 301.2 529 36.7
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 2.7e-79 300.4 497 37.6
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 2.7e-79 300.4 493 37.9
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 4.6e-79 299.7 505 37.4
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 7.8e-79 298.9 505 37.2
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 7.8e-79 298.9 505 37.2
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-78 298.5 505 36.8
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-78 298.5 505 37.2
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-78 298.1 505 37.2
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 1.3e-78 298.1 505 37.2
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 1.7e-78 297.7 505 37.0
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 1.7e-78 297.7 513 38.6
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 2.3e-78 297.4 506 36.4
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 2.9e-78 297.0 546 36.4
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.9e-78 297.0 506 36.2
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 3.9e-78 296.6 505 36.0
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.5e-77 294.7 505 36.4
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 3.3e-77 293.5 478 38.1
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 3.3e-77 293.5 541 35.5
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 3.1e-75 287.0 505 36.2
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 8.3e-73 278.9 503 36.4
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.1e-72 278.5 505 35.0
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 3.2e-72 276.9 503 35.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 4.3e-69 266.5 526 34.2
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.6e-68 264.6 463 35.6
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 1.8e-67 261.2 528 33.7
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 3.1e-67 260.4 458 36.9
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 5.2e-67 259.6 502 35.5
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 2.6e-66 257.3 482 36.1
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 7.5e-66 255.8 460 35.2
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 7.5e-66 255.8 460 35.2
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.3e-65 255.0 439 37.4
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 1.9e-64 251.1 430 37.0
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.7e-62 244.6 457 35.9
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.7e-57 226.9 497 32.4
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 4.1e-56 223.4 392 35.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 7.1e-56 222.6 493 32.7
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 1.2e-55 221.9 392 36.2
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.6e-55 221.5 414 36.2
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 2.1e-52 211.1 386 36.3
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.2e-50 205.3 369 37.1
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 4.4e-50 203.4 428 33.9
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 2.7e-47 194.1 349 34.4
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 2.4e-43 181.0 361 35.2
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 1.4e-40 171.8 333 35.1
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 1.2e-39 168.7 369 32.8
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 8.7e-38 162.5 214 43.5
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 3.3e-37 160.6 360 36.1
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 8.1e-36 156.0 173 45.7
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 1.8e-35 154.8 204 40.7
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 5.3e-35 153.3 541 30.3
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 4.9e-33 146.7 350 29.7
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 1.3e-30 138.7 225 37.8
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.1e-30 136.7 164 40.9
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 8.7e-30 136.0 212 36.8
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 1.0e-22 112.5 157 41.4
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 2.8e-20 104.4 135 43.7
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 4.8e-20 103.6 319 31.7
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 3.8e-17 94.0 113 44.2
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 2.3e-14 84.7 103 44.7
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 3.0e-14 84.3 97 41.2
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.3e-13 80.9 93 41.9
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 1.3e-12 79.0 101 42.6
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.8e-12 77.0 101 43.6
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-11 75.9 75 46.7
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.2e-10 72.4 79 44.3
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 5.9e-10 70.1 77 48.1
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-07 62.0 63 44.4
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 3.6e-07 60.8 55 56.4
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 4.6e-07 60.5 58 48.3
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 7.9e-07 59.7 58 48.3
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 2.3e-06 58.2 63 42.9
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 3.0e-06 57.8 50 50.0
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 5.1e-06 57.0 44 56.8
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 6.7e-06 56.6 58 44.8


User provided reference genes

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