Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 4.9e-73 277.7 141 100.0
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 8.5e-25 117.5 118 48.3
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.4e-22 110.2 118 51.7
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.3e-22 109.4 129 48.1
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 2.3e-22 109.4 118 51.7
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 4.4e-21 105.1 128 47.7
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 9.7e-21 104.0 117 46.2
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 9.7e-21 104.0 117 44.4
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 2.2e-20 102.8 117 45.3
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 1.8e-19 99.8 117 44.4
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 1.8e-19 99.8 117 44.4
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 2.4e-19 99.4 117 43.6
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.4e-19 99.4 117 43.6
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.4e-19 99.4 117 43.6
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 3.1e-19 99.0 125 41.6
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.1e-19 99.0 117 44.4
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.1e-19 98.6 117 43.6
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 4.1e-19 98.6 117 43.6
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 4.1e-19 98.6 117 43.6
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 4.1e-19 98.6 117 43.6
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 4.1e-19 98.6 117 43.6
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 5.3e-19 98.2 117 43.6
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 9.1e-19 97.4 116 43.1
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 1.2e-18 97.1 118 44.9
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.2e-18 97.1 117 43.6
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.2e-18 97.1 125 40.8
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 1.2e-18 97.1 117 45.3
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.5e-18 96.7 117 42.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.5e-18 96.7 125 38.4
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 2.0e-18 96.3 117 42.7
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.6e-18 95.9 117 43.6
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.6e-18 95.9 117 41.0
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 2.6e-18 95.9 117 43.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 2.6e-18 95.9 117 41.9
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 3.4e-18 95.5 117 41.9
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.4e-18 95.5 117 41.9
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 3.4e-18 95.5 117 41.9
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 4.5e-18 95.1 117 41.9
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 4.5e-18 95.1 117 43.6
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 4.5e-18 95.1 117 41.9
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 4.5e-18 95.1 117 42.7
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.9e-18 94.7 117 42.7
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 5.9e-18 94.7 117 42.7
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 5.9e-18 94.7 117 43.6
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 7.7e-18 94.4 117 42.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 7.7e-18 94.4 117 42.7
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 7.7e-18 94.4 117 42.7
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.0e-17 94.0 117 42.7
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.0e-17 94.0 117 41.9
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.3e-17 93.6 116 43.1
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.3e-17 93.6 117 41.0
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.3e-17 93.6 117 41.9
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.3e-17 93.6 116 43.1
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.7e-17 93.2 117 41.9
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.7e-17 93.2 117 42.7
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.7e-17 93.2 117 41.9
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 1.7e-17 93.2 130 41.5
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.7e-17 93.2 117 41.9
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 2.2e-17 92.8 117 46.2
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.2e-17 92.8 117 41.0
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 2.2e-17 92.8 117 40.2
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 2.9e-17 92.4 117 40.2
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 2.9e-17 92.4 127 47.2
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.8e-17 92.0 116 41.4
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 3.8e-17 92.0 125 36.8
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 5.0e-17 91.7 117 40.2
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 5.0e-17 91.7 125 38.4
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 5.0e-17 91.7 117 41.0
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 6.5e-17 91.3 117 41.0
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.5e-17 91.3 117 40.2
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 6.5e-17 91.3 116 40.5
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 8.5e-17 90.9 117 41.9
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 8.5e-17 90.9 117 41.0
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 8.5e-17 90.9 117 41.0
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.5e-17 90.9 117 42.7
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 8.5e-17 90.9 117 41.9
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 8.5e-17 90.9 116 41.4
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 1.1e-16 90.5 116 41.4
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-16 90.5 116 41.4
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 1.1e-16 90.5 116 41.4
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 1.1e-16 90.5 116 41.4
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 1.1e-16 90.5 117 41.9
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 1.1e-16 90.5 117 41.0
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.4e-16 90.1 117 40.2
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.4e-16 90.1 117 41.0
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.4e-16 90.1 117 39.3
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.4e-16 90.1 116 39.7
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 1.9e-16 89.7 117 38.5
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 1.9e-16 89.7 117 40.2
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 1.9e-16 89.7 116 41.4
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 1.9e-16 89.7 116 41.4
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 1.9e-16 89.7 117 41.0
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 1.9e-16 89.7 117 41.9
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.9e-16 89.7 127 41.7
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 1.9e-16 89.7 116 39.7
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 2.5e-16 89.4 117 40.2
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 2.5e-16 89.4 117 41.0
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.5e-16 89.4 116 40.5
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 2.5e-16 89.4 116 40.5
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 2.5e-16 89.4 116 42.2
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.5e-16 89.4 117 41.9
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 4.2e-16 88.6 116 40.5
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 4.2e-16 88.6 116 40.5
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 4.2e-16 88.6 116 40.5
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 4.2e-16 88.6 116 40.5
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 4.2e-16 88.6 117 40.2
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 4.2e-16 88.6 119 42.0
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 5.5e-16 88.2 116 40.5
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 5.5e-16 88.2 116 40.5
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 5.5e-16 88.2 116 40.5
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 5.5e-16 88.2 116 40.5
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.5e-16 88.2 117 42.7
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 5.5e-16 88.2 117 40.2
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 5.5e-16 88.2 119 40.3
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 5.5e-16 88.2 117 41.0
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 7.2e-16 87.8 117 40.2
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.2e-16 87.8 117 40.2
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 7.2e-16 87.8 116 41.4
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 9.4e-16 87.4 116 40.5
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 9.4e-16 87.4 117 40.2
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 1.2e-15 87.0 117 41.0
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.2e-15 87.0 117 40.2
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 1.6e-15 86.7 117 39.3
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.6e-15 86.7 129 40.3
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 2.1e-15 86.3 117 38.5
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 2.1e-15 86.3 117 41.0
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 2.1e-15 86.3 117 40.2
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 2.7e-15 85.9 116 39.7
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 3.6e-15 85.5 117 38.5
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 3.6e-15 85.5 116 41.4
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 4.7e-15 85.1 116 37.9
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 6.1e-15 84.7 139 35.3
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 7.9e-15 84.3 95 45.3
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.0e-14 84.0 117 37.6
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-14 83.2 117 37.6
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.8e-14 83.2 117 37.6
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 3.9e-14 82.0 121 40.5
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.1e-13 80.5 92 42.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 1.1e-13 80.5 106 42.5
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 2.6e-13 79.3 120 37.5
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 4.4e-13 78.6 118 36.4
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 4.4e-13 78.6 124 39.5
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 5.7e-13 78.2 135 32.6
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.4e-13 77.8 119 38.7
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 7.4e-13 77.8 120 38.3
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 9.7e-13 77.4 119 40.3
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.3e-12 77.0 120 37.5
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 1.1e-11 73.9 131 38.2
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 1.8e-11 73.2 92 40.2
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.1e-11 72.0 117 35.0
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 7.0e-11 71.2 92 40.2
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 9.1e-11 70.9 168 31.5
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 9.1e-11 70.9 168 31.5
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 6.5e-09 64.7 76 47.4
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-08 63.5 95 40.0
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-08 63.5 95 40.0
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.5e-08 63.5 95 40.0
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.9e-08 63.2 91 39.6
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 4.2e-08 62.0 116 32.8
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 5.5e-08 61.6 116 31.0
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.6e-07 60.1 53 54.7
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.6e-07 60.1 53 54.7
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.4e-06 57.0 71 43.7


User provided reference genes

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