Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.1e-130 468.4 298 100.0
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 9.8e-31 138.3 204 39.2
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 4.9e-30 136.0 204 45.1
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 6.4e-30 135.6 206 49.5
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 8.3e-30 135.2 203 39.9
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 1.1e-29 134.8 204 49.0
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 1.4e-29 134.4 204 39.7
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.8e-29 134.0 204 44.6
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.8e-29 134.0 204 46.1
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 2.4e-29 133.7 204 48.5
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 4.1e-29 132.9 204 45.6
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.1e-29 132.9 204 46.6
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.1e-29 132.9 204 37.7
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 5.4e-29 132.5 204 43.6
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 7.0e-29 132.1 207 44.0
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 7.0e-29 132.1 207 44.0
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 7.0e-29 132.1 207 44.0
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 7.0e-29 132.1 181 42.0
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 9.2e-29 131.7 181 49.2
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 9.2e-29 131.7 204 42.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 9.2e-29 131.7 204 42.6
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.2e-29 131.7 199 39.7
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 9.2e-29 131.7 181 42.0
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 1.2e-28 131.3 204 48.5
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 1.2e-28 131.3 200 39.5
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.2e-28 131.3 207 44.4
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.6e-28 131.0 204 37.7
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 1.6e-28 131.0 204 49.0
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.6e-28 131.0 207 42.5
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 2.0e-28 130.6 204 36.3
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 2.0e-28 130.6 204 46.1
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 2.7e-28 130.2 204 36.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 3.5e-28 129.8 204 38.7
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 3.5e-28 129.8 205 38.0
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 5.9e-28 129.0 204 46.6
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 5.9e-28 129.0 204 45.1
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.9e-28 129.0 135 48.9
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 5.9e-28 129.0 200 39.0
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 5.9e-28 129.0 204 47.5
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 7.8e-28 128.6 204 47.1
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 7.8e-28 128.6 204 40.7
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 7.8e-28 128.6 198 39.4
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.0e-27 128.3 207 48.3
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.0e-27 128.3 199 39.2
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.3e-27 127.9 204 45.6
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 1.3e-27 127.9 204 37.3
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.7e-27 127.5 181 39.8
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 1.7e-27 127.5 204 36.3
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.3e-27 127.1 204 37.3
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 2.3e-27 127.1 204 36.8
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 2.3e-27 127.1 204 47.5
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.3e-27 127.1 204 43.1
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 3.0e-27 126.7 204 47.5
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 3.0e-27 126.7 204 47.5
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 3.0e-27 126.7 204 47.5
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 3.9e-27 126.3 200 48.0
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 3.9e-27 126.3 204 47.5
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 3.9e-27 126.3 223 35.9
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 5.0e-27 125.9 177 50.3
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 5.0e-27 125.9 204 46.1
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.0e-27 125.9 204 38.2
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 8.6e-27 125.2 137 47.4
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 8.6e-27 125.2 177 50.3
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 8.6e-27 125.2 204 47.1
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.1e-26 124.8 200 44.5
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.1e-26 124.8 208 40.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.1e-26 124.8 177 49.7
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 1.5e-26 124.4 205 37.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.9e-26 124.0 204 47.5
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 1.9e-26 124.0 204 47.5
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 2.5e-26 123.6 204 46.1
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.3e-26 123.2 204 44.1
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 5.6e-26 122.5 177 49.7
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.6e-26 122.5 198 37.4
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.3e-26 122.1 177 38.4
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 9.5e-26 121.7 177 49.7
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 9.5e-26 121.7 177 49.7
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 9.5e-26 121.7 203 36.5
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 2.8e-25 120.2 202 37.1
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.8e-25 120.2 171 41.5
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 3.6e-25 119.8 135 45.2
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 6.2e-25 119.0 187 36.4
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 6.2e-25 119.0 170 41.2
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.0e-25 118.6 177 49.2
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 1.8e-24 117.5 203 43.3
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.8e-24 117.5 170 43.5
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 2.3e-24 117.1 204 43.1
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 3.1e-24 116.7 171 48.5
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.0e-24 116.3 135 44.4
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 6.8e-24 115.5 135 45.2
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 8.9e-24 115.2 204 33.3
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 8.9e-24 115.2 204 45.6
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 1.2e-23 114.8 207 33.8
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 2.0e-23 114.0 202 43.6
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 2.0e-23 114.0 101 52.5
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.6e-23 113.6 171 39.2
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 3.4e-23 113.2 171 46.2
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 3.4e-23 113.2 142 42.3
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 4.4e-23 112.8 179 36.9
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 5.8e-23 112.5 171 45.6
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 7.5e-23 112.1 177 42.4
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.2e-22 110.5 170 38.8
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 4.1e-21 106.3 181 36.5
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.7e-20 103.6 114 43.9
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.1e-18 98.2 182 35.7
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 1.6e-17 94.4 103 44.7
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 2.3e-16 90.5 107 43.9
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 7.5e-15 85.5 145 49.7
GSVIVG01010839001 Vitis vinifera HOM05D001043 ORTHO05D006432 1.5e-10 71.2 140 33.6
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.3e-10 69.7 138 36.2
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 5.6e-10 69.3 136 44.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 7.3e-10 68.9 140 32.9
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 9.5e-10 68.6 115 33.9
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 9.5e-10 68.6 140 32.1
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.1e-09 67.4 139 31.7
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.1e-09 67.4 132 34.8
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 2.8e-09 67.0 142 31.7
AUR62002348 Chenopodium quinoa HOM05D001043 ORTHO05D006432 3.6e-09 66.6 138 31.2
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.7e-09 66.2 141 34.0
Ciclev10020184m.g Citrus clementina HOM05D001043 ORTHO05D006432 8.1e-09 65.5 140 31.4
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.4e-08 64.7 155 30.3
FvH4_4g10900 Fragaria vesca HOM05D001043 ORTHO05D006432 2.3e-08 63.9 123 36.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 3.1e-08 63.5 115 33.0
FAN12G0575 Fragaria x ananassa HOM05D001043 ORTHO05D006432 3.1e-08 63.5 123 36.6
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 4.0e-08 63.2 113 34.5
FAN17G1903 Fragaria x ananassa HOM05D001043 ORTHO05D006432 4.0e-08 63.2 123 36.6
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 4.0e-08 63.2 127 33.1
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 5.2e-08 62.8 141 30.5
Nitab4.5_0006064g0010 Nicotiana tabacum HOM05D001043 ORTHO05D006432 5.2e-08 62.8 140 31.4
CARHR005620 Cardamine hirsuta HOM05D001043 ORTHO05D006432 6.8e-08 62.4 139 33.1
ClCG05G007210 Citrullus lanatus HOM05D001043 ORTHO05D006432 8.9e-08 62.0 100 38.0
Mapoly0014s0053 Marchantia polymorpha HOM05D001043 ORTHO05D006432 8.9e-08 62.0 117 36.8
RcHm_v2.0_Chr4g0406481 Rosa chinensis HOM05D001043 ORTHO05D006432 2.0e-07 60.8 123 35.8
Hma1.2p1_2415F.1_g321710 Hydrangea macrophylla HOM05D001043 ORTHO05D006432 2.6e-07 60.5 140 31.4
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 3.4e-07 60.1 115 32.2
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 3.4e-07 60.1 115 32.2
Nn7g38145 Nelumbo nucifera HOM05D001043 ORTHO05D006432 4.4e-07 59.7 140 30.0
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.7e-06 57.8 115 30.4
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 6.4e-06 55.8 137 30.7
MBI07_g18520_MAGBIO Magnolia biondii HOM05D001043 ORTHO05D006432 6.4e-06 55.8 141 29.1


User provided reference genes

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