Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g629400 Chlamydomonas reinhardtii HOM05D006304 ORTHO05D008584 0.0e+00 1257.3 1061 100.0
Duzib205G0644 Durio zibethinus HOM05D006304 ORTHO05D008584 4.0e-42 177.9 203 44.3
Gohir.A12G175370 Gossypium hirsutum HOM05D006304 ORTHO05D008584 5.7e-41 174.1 200 45.5
Thecc.03G080300 Theobroma cacao HOM05D006304 ORTHO05D008584 5.7e-41 174.1 208 44.2
Gohir.D12G178452 Gossypium hirsutum HOM05D006304 ORTHO05D008584 7.5e-41 173.7 200 45.5
Gorai.008G191000 Gossypium raimondii HOM05D006304 ORTHO05D008584 7.5e-41 173.7 200 45.5
CsaV3_1G007890 Cucumis sativus L. HOM05D006304 ORTHO05D008584 3.7e-40 171.4 202 43.1
CiPaw.11G039300 Carya illinoinensis HOM05D006304 ORTHO05D008584 4.9e-40 171.0 203 43.8
A06p29540 Brassica napus HOM05D006304 ORTHO05D008584 1.1e-39 169.9 257 42.8
Nn3g17140 Nelumbo nucifera HOM05D006304 ORTHO05D008584 1.4e-39 169.5 205 42.4
PSO017G6991 Papaver somniferum HOM05D006304 ORTHO05D008584 1.4e-39 169.5 201 43.3
Glyma.05G029400 Glycine max HOM05D006304 ORTHO05D008584 1.8e-39 169.1 212 42.9
AT5G62760 Arabidopsis thaliana HOM05D006304 ORTHO05D008584 2.4e-39 168.7 197 46.2
BcaB02g09690 Brassica carinata HOM05D006304 ORTHO05D008584 2.4e-39 168.7 198 46.0
Carub.0008s2349 Capsella rubella HOM05D006304 ORTHO05D008584 2.4e-39 168.7 197 46.2
Thhalv10003777m.g Eutrema salsugineum HOM05D006304 ORTHO05D008584 2.4e-39 168.7 197 46.2
COL.COLO4_05911 Corchorus olitorius HOM05D006304 ORTHO05D008584 4.1e-39 167.9 219 43.4
Sc10g0009990 Simmondsia chinensis HOM05D006304 ORTHO05D008584 4.1e-39 167.9 208 43.8
TAR629G0077 Trochodendron aralioides HOM05D006304 ORTHO05D008584 4.1e-39 167.9 208 41.8
Sp2g25930 Schrenkiella parvula HOM05D006304 ORTHO05D008584 5.4e-39 167.5 197 45.7
AL8G39730 Arabidopsis lyrata HOM05D006304 ORTHO05D008584 7.0e-39 167.2 197 45.7
Sed0028137 Sechium edule HOM05D006304 ORTHO05D008584 7.0e-39 167.2 199 43.2
Lj4g0004911 Lotus japonicus HOM05D006304 ORTHO05D008584 9.2e-39 166.8 211 44.1
Cpa.g.sc17.206 Carica papaya HOM05D006304 ORTHO05D008584 1.2e-38 166.4 206 44.7
MELO3C002204.2 Cucumis melo HOM05D006304 ORTHO05D008584 1.2e-38 166.4 201 44.3
arahy.Tifrunner.gnm1.ann1.E16Z9R Arachis hypogaea HOM05D006304 ORTHO05D008584 1.6e-38 166.0 212 42.9
TAR371G0034 Trochodendron aralioides HOM05D006304 ORTHO05D008584 1.6e-38 166.0 214 42.1
TPR.G38415 Trifolium pratense HOM05D006304 ORTHO05D008584 2.0e-38 165.6 213 44.1
Cfa018983 Carpinus fangiana HOM05D006304 ORTHO05D008584 2.7e-38 165.2 207 44.0
DCAR_021535 Daucus carota HOM05D006304 ORTHO05D008584 2.7e-38 165.2 211 43.1
MD06G1188800 Malus domestica HOM05D006304 ORTHO05D008584 2.7e-38 165.2 203 43.8
THA.LOC104821457 Tarenaya hassleriana HOM05D006304 ORTHO05D008584 2.7e-38 165.2 208 44.2
BcaC01g02519 Brassica carinata HOM05D006304 ORTHO05D008584 4.5e-38 164.5 198 44.9
Dinv38671 Davidia involucrata HOM05D006304 ORTHO05D008584 4.5e-38 164.5 203 42.4
Nitab4.5_0000269g0180 Nicotiana tabacum HOM05D006304 ORTHO05D008584 4.5e-38 164.5 205 42.4
CANSAT80G1066 Cannabis sativa HOM05D006304 ORTHO05D008584 7.8e-38 163.7 219 41.1
CARHR276550 Cardamine hirsuta HOM05D006304 ORTHO05D008584 7.8e-38 163.7 197 44.2
Lalb_Chr12g0196741 Lupinus albus HOM05D006304 ORTHO05D008584 7.8e-38 163.7 213 43.7
Potri.015G064600 Populus trichocarpa HOM05D006304 ORTHO05D008584 7.8e-38 163.7 217 41.9
Sabra15G0090300 Salix brachista HOM05D006304 ORTHO05D008584 7.8e-38 163.7 217 41.9
VMungo1215G2961 Vigna mungo HOM05D006304 ORTHO05D008584 1.7e-37 162.5 212 41.0
Phvul.003G192300 Phaseolus vulgaris HOM05D006304 ORTHO05D008584 2.3e-37 162.2 215 40.9
Migut.I00131 Erythranthe guttata HOM05D006304 ORTHO05D008584 3.9e-37 161.4 208 41.8
CDE06G1311 Ceratophyllum demersum HOM05D006304 ORTHO05D008584 5.0e-37 161.0 207 43.0
Ciclev10019215m.g Citrus clementina HOM05D006304 ORTHO05D008584 5.0e-37 161.0 203 43.3
Atru.chr9.2307 Acer truncatum HOM05D006304 ORTHO05D008584 6.6e-37 160.6 203 42.9
C03p63960 Brassica napus HOM05D006304 ORTHO05D008584 6.6e-37 160.6 199 44.7
FvH4_5g15410 Fragaria vesca HOM05D006304 ORTHO05D008584 6.6e-37 160.6 204 43.1
MBI12_g19403_MAGBIO Magnolia biondii HOM05D006304 ORTHO05D008584 6.6e-37 160.6 203 41.4
Glyma.17G097500 Glycine max HOM05D006304 ORTHO05D008584 8.6e-37 160.2 212 41.5
Prupe.5G187100 Prunus persica HOM05D006304 ORTHO05D008584 8.6e-37 160.2 203 41.9
HPP92_021789 Vanilla planifolia HOM05D006304 ORTHO05D008584 8.6e-37 160.2 209 43.1
GSVIVG01008051001 Vitis vinifera HOM05D006304 ORTHO05D008584 8.6e-37 160.2 207 42.5
ATR1120G178 Amborella trichopoda HOM05D006304 ORTHO05D008584 1.1e-36 159.8 208 40.9
Ca_21844_v3 Cicer arietinum L. HOM05D006304 ORTHO05D008584 1.5e-36 159.5 213 42.7
RcHm_v2.0_Chr7g0180671 Rosa chinensis HOM05D006304 ORTHO05D008584 1.5e-36 159.5 204 43.1
Ah.11g048730 Amaranthus hybridus HOM05D006304 ORTHO05D008584 1.9e-36 159.1 200 43.0
Aqoxy3G00750 Aquilegia oxysepala HOM05D006304 ORTHO05D008584 1.9e-36 159.1 201 41.3
MD14G1195600 Malus domestica HOM05D006304 ORTHO05D008584 1.9e-36 159.1 203 41.9
Nitab4.5_0009895g0010 Nicotiana tabacum HOM05D006304 ORTHO05D008584 1.9e-36 159.1 205 40.5
Psat4g053720 Pisum sativum HOM05D006304 ORTHO05D008584 2.5e-36 158.7 213 41.8
CAN.G628.40 Capsicum annuum HOM05D006304 ORTHO05D008584 3.3e-36 158.3 211 39.8
PGR083G1524 Punica granatum HOM05D006304 ORTHO05D008584 4.3e-36 157.9 213 40.8
Medtr4g107890 Medicago truncatula HOM05D006304 ORTHO05D008584 5.6e-36 157.5 219 40.6
Actinidia34979 Actinidia chinensis HOM05D006304 ORTHO05D008584 9.5e-36 156.8 206 42.2
Actinidia19056 Actinidia chinensis HOM05D006304 ORTHO05D008584 1.2e-35 156.4 211 42.2
BraA06t25899Z Brassica rapa HOM05D006304 ORTHO05D008584 1.2e-35 156.4 281 39.1
EL10Ac5g10949 Beta vulgaris HOM05D006304 ORTHO05D008584 1.6e-35 156.0 201 42.3
TWI60G1649 Tripterygium wilfordii HOM05D006304 ORTHO05D008584 2.1e-35 155.6 211 41.2
CSS0050297 Camellia sinensis var. sinensis HOM05D006304 ORTHO05D008584 2.8e-35 155.2 202 41.1
AUR62008366 Chenopodium quinoa HOM05D006304 ORTHO05D008584 2.8e-35 155.2 219 42.0
Manes.06G096000 Manihot esculenta HOM05D006304 ORTHO05D008584 2.8e-35 155.2 204 41.7
ECA247G4106 Erigeron canadensis HOM05D006304 ORTHO05D008584 3.6e-35 154.8 209 40.2
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.6e-35 154.8 198 42.4
HanXRQChr02g0045271 Helianthus annuus HOM05D006304 ORTHO05D008584 3.6e-35 154.8 200 40.5
unitig_0.g2536 Utricularia gibba HOM05D006304 ORTHO05D008584 3.6e-35 154.8 203 40.4
Zm00001eb240230 Zea mays HOM05D006304 ORTHO05D008584 3.6e-35 154.8 200 40.5
Cc04_g15450 Coffea canephora HOM05D006304 ORTHO05D008584 4.7e-35 154.5 207 42.0
Oeu048746.1 Olea europaea HOM05D006304 ORTHO05D008584 4.7e-35 154.5 214 39.3
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.0e-34 153.3 196 42.3
Sopen06g027340 Solanum pennellii HOM05D006304 ORTHO05D008584 1.0e-34 153.3 205 40.0
Hund09367 Selenicereus undatus HOM05D006304 ORTHO05D008584 1.4e-34 152.9 217 40.1
AUR62021733 Chenopodium quinoa HOM05D006304 ORTHO05D008584 1.8e-34 152.5 218 40.8
Os02g0215000 Oryza sativa ssp. japonica HOM05D006304 ORTHO05D008584 1.8e-34 152.5 200 40.5
Aa31LG11G920 Aethionema arabicum HOM05D006304 ORTHO05D008584 4.0e-34 151.4 218 40.4
Rhsim12G0159100 Rhododendron simsii HOM05D006304 ORTHO05D008584 5.2e-34 151.0 212 40.1
Eucgr.B00434 Eucalyptus grandis HOM05D006304 ORTHO05D008584 6.8e-34 150.6 206 39.8
SEGI_29067 Sequoiadendron giganteum HOM05D006304 ORTHO05D008584 8.9e-34 150.2 204 39.7
SGA_v2.0_scaffold56G20049 Striga asiatica HOM05D006304 ORTHO05D008584 1.2e-33 149.8 209 39.7
Mapoly0068s0038 Marchantia polymorpha HOM05D006304 ORTHO05D008584 3.4e-33 148.3 204 39.7
BolC3t18650H Brassica oleracea HOM05D006304 ORTHO05D008584 2.9e-32 145.2 226 39.4
CBR_g5693 Chara braunii HOM05D006304 ORTHO05D008584 1.4e-31 142.9 216 37.0
Solyc06g071040.4 Solanum lycopersicum HOM05D006304 ORTHO05D008584 7.0e-31 140.6 205 38.0
Peaxi162Scf00013g00025 Petunia axillaris HOM05D006304 ORTHO05D008584 3.5e-30 138.3 206 37.9
FAN18G3228 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.8e-30 137.1 232 36.2
Lsat_1_v5_gn_1_10941 Lactuca sativa HOM05D006304 ORTHO05D008584 1.3e-29 136.3 206 39.3
SalBow5G3794 Salvia bowleyana HOM05D006304 ORTHO05D008584 1.1e-28 133.3 248 33.1
Haze_07372 Corylus avellana HOM05D006304 ORTHO05D008584 2.5e-28 132.1 183 42.1
vmacro16566 Vaccinium macrocarpon HOM05D006304 ORTHO05D008584 3.3e-28 131.7 259 33.6
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.3e-28 130.6 198 39.4
Lj5A115T69 Lonicera japonica HOM05D006304 ORTHO05D008584 2.3e-26 125.6 250 32.0
arahy.Tifrunner.gnm1.ann1.YQHF2A Arachis hypogaea HOM05D006304 ORTHO05D008584 4.4e-25 121.3 300 30.7
QL10p015696 Quercus lobata HOM05D006304 ORTHO05D008584 1.2e-22 113.2 145 42.1
ClCG01G014430 Citrullus lanatus HOM05D006304 ORTHO05D008584 3.5e-22 111.7 308 29.2
PGSC0003DMG402033036 Solanum tuberosum HOM05D006304 ORTHO05D008584 7.1e-15 87.4 99 45.5
Duzib084G0195 Durio zibethinus HOM05D006304 ORTHO05D008584 1.2e-11 76.6 161 35.4
QL10p015692 Quercus lobata HOM05D006304 ORTHO05D008584 4.2e-07 61.6 74 43.2


User provided reference genes

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