Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 4.0e-205 718.0 396 100.0
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 1.1e-58 231.5 262 48.1
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 1.3e-57 228.0 370 37.8
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 7.8e-52 208.8 340 38.5
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 1.6e-49 201.1 356 36.5
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 1.4e-48 198.0 398 35.7
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 1.5e-47 194.5 341 38.1
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 2.9e-46 190.3 257 41.6
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 3.8e-46 189.9 253 45.5
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 6.4e-46 189.1 347 37.8
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 1.1e-45 188.3 353 33.7
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 1.1e-45 188.3 272 41.9
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 1.4e-45 188.0 374 37.2
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 1.9e-45 187.6 347 38.0
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 1.9e-45 187.6 353 36.3
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 2.4e-45 187.2 351 37.3
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 2.4e-45 187.2 347 37.8
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 4.2e-45 186.4 364 36.3
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 4.2e-45 186.4 364 36.8
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 7.1e-45 185.7 350 35.7
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 9.3e-45 185.3 340 36.5
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 9.3e-45 185.3 251 39.8
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 1.2e-44 184.9 345 35.1
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 1.2e-44 184.9 352 36.1
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 1.6e-44 184.5 355 34.4
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 2.1e-44 184.1 271 41.3
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 2.1e-44 184.1 254 42.9
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 2.7e-44 183.7 270 41.1
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 3.5e-44 183.3 269 41.6
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 3.5e-44 183.3 347 34.6
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 4.6e-44 183.0 377 34.7
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 6.0e-44 182.6 353 36.8
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 6.0e-44 182.6 377 34.5
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 6.0e-44 182.6 351 37.0
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 1.0e-43 181.8 387 35.1
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.8e-43 181.0 367 36.0
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 2.3e-43 180.6 269 41.6
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 3.0e-43 180.3 373 34.6
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.9e-43 179.9 342 35.4
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 3.9e-43 179.9 337 36.8
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 5.1e-43 179.5 340 35.6
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.1e-42 178.3 341 36.7
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 1.5e-42 177.9 373 34.0
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 1.9e-42 177.6 250 41.2
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.9e-42 177.6 355 35.2
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 1.9e-42 177.6 240 41.7
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 2.5e-42 177.2 242 42.6
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 2.5e-42 177.2 360 35.0
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 3.3e-42 176.8 349 35.5
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 3.3e-42 176.8 382 35.6
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 3.3e-42 176.8 263 41.4
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 4.3e-42 176.4 359 33.7
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 5.6e-42 176.0 374 34.5
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 9.6e-42 175.3 349 36.7
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 9.6e-42 175.3 352 36.4
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 9.6e-42 175.3 257 41.2
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.3e-41 174.9 341 33.7
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 1.6e-41 174.5 262 41.6
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.6e-41 174.5 355 34.1
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.6e-41 174.5 353 33.7
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 2.1e-41 174.1 348 33.9
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 2.8e-41 173.7 372 34.9
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 2.8e-41 173.7 364 34.3
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 2.8e-41 173.7 362 34.3
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 3.7e-41 173.3 251 39.0
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 8.1e-41 172.2 340 35.0
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 8.1e-41 172.2 372 35.5
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 8.1e-41 172.2 363 36.4
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 1.1e-40 171.8 383 33.7
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 1.4e-40 171.4 337 35.6
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 1.8e-40 171.0 365 32.1
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 2.4e-40 170.6 394 32.7
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 2.4e-40 170.6 364 33.8
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 3.1e-40 170.2 337 35.3
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 6.9e-40 169.1 242 42.1
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 9.0e-40 168.7 345 34.2
MCO16G171 Micromonas commoda HOM05D007079 ORTHO05D009006 1.5e-39 167.9 230 44.8
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 2.0e-39 167.5 332 34.3
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 3.4e-39 166.8 338 34.9
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.5e-39 166.4 242 41.3
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 1.3e-38 164.9 269 40.9
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 2.2e-38 164.1 242 41.3
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 2.2e-38 164.1 368 33.4
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 2.9e-38 163.7 358 33.8
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 8.4e-38 162.2 315 35.2
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 8.4e-38 162.2 382 31.9
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 1.4e-37 161.4 360 31.1
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 1.4e-37 161.4 325 37.2
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 4.2e-37 159.8 341 32.6
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 2.1e-36 157.5 338 34.0
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 2.7e-36 157.1 280 38.9
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.0e-35 155.2 269 38.7
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.0e-35 153.7 269 38.7
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 3.9e-35 153.3 269 38.3
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 2.5e-34 150.6 274 37.6
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 2.5e-34 150.6 315 34.9
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 4.3e-34 149.8 354 31.4
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 2.8e-33 147.1 359 31.5
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.1e-32 145.2 340 32.6
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.5e-29 134.0 269 34.9
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 2.1e-28 131.0 228 38.2
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 3.3e-26 123.6 338 30.5
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 9.7e-26 122.1 451 25.3
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 6.3e-25 119.4 370 30.5
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 1.8e-24 117.9 223 39.0
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 4.1e-24 116.7 346 30.3
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 3.9e-19 100.1 109 45.9
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 5.1e-19 99.8 201 32.3
SEGI_21203 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.3e-09 68.6 152 30.9
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 4.8e-09 66.6 346 24.6


User provided reference genes

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