Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 5.6e-127 457.6 229 100.0
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.5e-55 220.3 352 40.1
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 4.1e-53 212.2 352 39.2
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.0e-48 197.6 356 37.1
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.2e-48 195.3 361 36.6
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 1.5e-47 193.7 351 37.0
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 9.8e-47 191.0 364 35.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.7e-43 180.3 351 35.3
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 2.3e-43 179.9 359 34.0
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 2.3e-43 179.9 356 34.6
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 2.9e-43 179.5 361 34.9
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.9e-43 179.5 361 35.2
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.9e-43 179.5 356 34.0
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.9e-43 179.1 350 35.4
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 5.0e-43 178.7 356 34.0
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 8.6e-43 177.9 322 36.6
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 1.1e-42 177.6 361 34.1
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.5e-42 177.2 361 34.1
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.5e-42 177.2 361 34.1
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 1.9e-42 176.8 361 33.8
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 2.5e-42 176.4 361 33.8
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.5e-42 176.4 361 33.8
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 2.5e-42 176.4 356 33.7
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 7.3e-42 174.9 361 33.5
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 7.3e-42 174.9 350 35.1
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.2e-41 174.1 361 34.1
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.2e-41 174.1 361 34.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 1.2e-41 174.1 364 33.5
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.6e-41 173.7 361 33.2
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 2.1e-41 173.3 351 34.8
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 2.8e-41 172.9 356 34.6
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 2.8e-41 172.9 356 34.3
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 3.6e-41 172.6 361 33.8
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 3.6e-41 172.6 353 33.7
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.6e-41 172.6 345 35.4
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 4.7e-41 172.2 361 33.8
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 4.7e-41 172.2 361 33.2
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 4.7e-41 172.2 356 33.4
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 6.1e-41 171.8 356 33.7
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 6.1e-41 171.8 366 34.4
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 6.1e-41 171.8 362 34.0
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 6.1e-41 171.8 361 33.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 8.0e-41 171.4 357 33.1
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 8.0e-41 171.4 226 44.2
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.0e-40 171.0 361 33.5
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 1.0e-40 171.0 361 33.2
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.0e-40 171.0 361 34.3
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.0e-40 171.0 356 34.0
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 1.4e-40 170.6 361 33.5
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 1.4e-40 170.6 356 33.7
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.3e-40 169.9 361 33.0
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 2.3e-40 169.9 356 34.0
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 3.1e-40 169.5 344 35.5
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 4.0e-40 169.1 362 33.1
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 5.2e-40 168.7 372 33.1
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 5.2e-40 168.7 356 34.0
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 6.8e-40 168.3 361 33.2
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 8.9e-40 167.9 361 33.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 8.9e-40 167.9 357 33.1
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 1.2e-39 167.5 365 33.2
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 1.2e-39 167.5 356 33.7
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.2e-39 167.5 361 33.2
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.5e-39 167.2 361 33.2
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 1.5e-39 167.2 376 33.2
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 2.0e-39 166.8 365 33.2
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.0e-39 166.8 361 32.4
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.0e-39 166.8 361 32.4
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 2.0e-39 166.8 360 33.9
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 2.6e-39 166.4 351 32.8
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 3.4e-39 166.0 357 33.1
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.4e-39 166.0 356 32.9
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 4.4e-39 165.6 361 33.0
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 4.4e-39 165.6 340 34.1
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 4.4e-39 165.6 361 33.0
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 7.5e-39 164.9 361 33.0
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.3e-38 164.1 361 32.7
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.3e-38 164.1 362 32.6
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.7e-38 163.7 359 33.4
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 3.7e-38 162.5 357 32.2
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 3.7e-38 162.5 381 33.3
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.9e-38 162.2 332 35.2
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 6.4e-38 161.8 340 35.0
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 8.3e-38 161.4 364 33.2
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 8.3e-38 161.4 357 32.2
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.1e-37 161.0 385 31.2
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.9e-37 160.2 362 32.9
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.4e-37 159.8 382 31.9
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 1.6e-36 157.1 361 32.4
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 2.0e-36 156.8 382 31.2
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 3.5e-36 156.0 404 31.4
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 4.6e-36 155.6 401 30.9
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.6e-36 155.6 381 31.0
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.3e-35 153.3 365 31.0
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 8.6e-35 151.4 224 40.6
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 1.1e-34 151.0 336 33.0
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 3.3e-34 149.4 325 34.2
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.8e-33 146.4 320 34.4
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 6.2e-33 145.2 349 30.4
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 2.3e-32 143.3 412 28.4
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 4.4e-31 139.0 274 36.1
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.3e-30 137.5 195 40.5
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 6.4e-30 135.2 256 36.3
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.2e-29 132.9 401 27.9
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 1.9e-26 123.6 393 27.7
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 1.9e-26 123.6 281 32.7
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.1e-24 117.9 239 34.3
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 3.4e-23 112.8 341 27.3
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 1.9e-21 107.1 268 30.2
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 9.2e-21 104.8 96 55.2
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.1e-20 103.6 200 35.0
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 2.3e-19 100.1 84 58.3
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 3.0e-19 99.8 200 34.5
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 3.9e-19 99.4 95 52.6
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 1.1e-18 97.8 212 35.8
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 2.5e-18 96.7 83 55.4
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 2.5e-18 96.7 200 33.5
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 3.3e-18 96.3 197 34.0
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.6e-18 95.5 200 33.0
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 5.6e-18 95.5 186 34.4
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 7.3e-18 95.1 83 55.4
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 4.7e-17 92.4 183 33.9
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 1.8e-16 90.5 187 32.6
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 2.4e-16 90.1 324 27.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-15 87.8 76 57.9
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.2e-15 87.8 76 57.9
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.4e-15 85.9 131 38.9
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 7.6e-15 85.1 79 50.6
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 1.1e-13 81.3 129 39.5
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 7.1e-13 78.6 62 62.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 7.1e-13 78.6 83 49.4
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-11 74.3 181 30.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.1e-10 71.2 227 28.6
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 3.1e-08 63.2 102 39.2
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.1e-08 63.2 128 32.0
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 6.4e-06 55.5 50 50.0


User provided reference genes

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