Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre14.g608500 Chlamydomonas reinhardtii HOM05D006130 ORTHO05D007491 2.6e-219 765.8 618 100.0
SEGI_25559 Sequoiadendron giganteum HOM05D006130 ORTHO05D007491 4.1e-15 87.4 120 38.3
CBR_g30690 Chara braunii HOM05D006130 ORTHO05D007491 2.0e-14 85.1 119 38.7
SMO358G0378 Selaginella moellendorffii HOM05D006130 ORTHO05D007491 6.6e-13 80.1 122 35.2
Mapoly0014s0114 Marchantia polymorpha HOM05D006130 ORTHO05D007491 8.6e-13 79.7 129 37.2
Lj1g0022742 Lotus japonicus HOM05D006130 ORTHO05D007491 9.5e-12 76.3 125 36.0
AL8G42310 Arabidopsis lyrata HOM05D006130 ORTHO05D007491 2.1e-11 75.1 122 33.6
arahy.Tifrunner.gnm1.ann1.JIC903 Arachis hypogaea HOM05D006130 ORTHO05D007491 2.8e-11 74.7 126 34.1
CARHR278840 Cardamine hirsuta HOM05D006130 ORTHO05D007491 4.7e-11 73.9 122 32.8
AagrBONN_evm.TU.Sc2ySwM_228.1847 Anthoceros agrestis HOM05D006130 ORTHO05D007491 6.1e-11 73.6 140 29.3
TWI74G0604 Tripterygium wilfordii HOM05D006130 ORTHO05D007491 8.0e-11 73.2 156 33.3
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 1.0e-10 72.8 122 32.8
C03p61330 Brassica napus HOM05D006130 ORTHO05D007491 1.0e-10 72.8 122 32.8
BolC3t18393H Brassica oleracea HOM05D006130 ORTHO05D007491 1.0e-10 72.8 122 32.8
CANSAT80G2857 Cannabis sativa HOM05D006130 ORTHO05D007491 1.0e-10 72.8 118 34.7
HPP92_027147 Vanilla planifolia HOM05D006130 ORTHO05D007491 1.0e-10 72.8 118 33.9
Zm00001eb431860 Zea mays HOM05D006130 ORTHO05D007491 1.0e-10 72.8 125 32.0
THA.LOC104818474 Tarenaya hassleriana HOM05D006130 ORTHO05D007491 1.4e-10 72.4 162 30.2
HPP92_016462 Vanilla planifolia HOM05D006130 ORTHO05D007491 1.4e-10 72.4 118 33.9
Ah.14g080600 Amaranthus hybridus HOM05D006130 ORTHO05D007491 1.8e-10 72.0 118 35.6
Pp3c16_16240 Physcomitrium patens HOM05D006130 ORTHO05D007491 1.8e-10 72.0 118 31.4
Glyma.04G218800 Glycine max HOM05D006130 ORTHO05D007491 2.3e-10 71.6 122 32.0
Manes.12G143200 Manihot esculenta HOM05D006130 ORTHO05D007491 2.3e-10 71.6 126 34.1
Ca_16897_v3 Cicer arietinum L. HOM05D006130 ORTHO05D007491 3.1e-10 71.2 121 33.9
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 4.0e-10 70.9 122 32.0
CiPaw.04G091300 Carya illinoinensis HOM05D006130 ORTHO05D007491 4.0e-10 70.9 130 33.8
RcHm_v2.0_Chr2g0117041 Rosa chinensis HOM05D006130 ORTHO05D007491 4.0e-10 70.9 118 34.7
TPR.G23729 Trifolium pratense HOM05D006130 ORTHO05D007491 4.0e-10 70.9 126 33.3
arahy.Tifrunner.gnm1.ann1.S5QZ0Z Arachis hypogaea HOM05D006130 ORTHO05D007491 5.2e-10 70.5 126 33.3
EL10Ac6g14758 Beta vulgaris HOM05D006130 ORTHO05D007491 5.2e-10 70.5 118 33.9
MD15G1331600 Malus domestica HOM05D006130 ORTHO05D007491 5.2e-10 70.5 118 33.9
DCAR_001374 Daucus carota HOM05D006130 ORTHO05D007491 6.8e-10 70.1 153 30.1
Aa31LG1G17100 Aethionema arabicum HOM05D006130 ORTHO05D007491 8.9e-10 69.7 125 32.0
A06p31630 Brassica napus HOM05D006130 ORTHO05D007491 8.9e-10 69.7 122 32.0
BcaB02g09834 Brassica carinata HOM05D006130 ORTHO05D007491 1.2e-09 69.3 159 28.9
Psat5g066000 Pisum sativum HOM05D006130 ORTHO05D007491 1.2e-09 69.3 125 32.8
Carub.0008s2566 Capsella rubella HOM05D006130 ORTHO05D007491 1.5e-09 68.9 121 32.2
Cpa.g.sc191.11 Carica papaya HOM05D006130 ORTHO05D007491 1.5e-09 68.9 121 33.1
Medtr3g095020 Medicago truncatula HOM05D006130 ORTHO05D007491 1.5e-09 68.9 125 32.8
Solyc04g051780.3 Solanum lycopersicum HOM05D006130 ORTHO05D007491 1.5e-09 68.9 138 31.2
Sopen04g023130 Solanum pennellii HOM05D006130 ORTHO05D007491 1.5e-09 68.9 138 31.2
PGSC0003DMG400031208 Solanum tuberosum HOM05D006130 ORTHO05D007491 1.5e-09 68.9 138 31.2
CAN.G347.1 Capsicum annuum HOM05D006130 ORTHO05D007491 2.0e-09 68.6 138 31.2
Haze_25050 Corylus avellana HOM05D006130 ORTHO05D007491 2.0e-09 68.6 125 32.8
Dinv42687 Davidia involucrata HOM05D006130 ORTHO05D007491 2.0e-09 68.6 121 32.2
Glyma.06G147000 Glycine max HOM05D006130 ORTHO05D007491 2.0e-09 68.6 122 31.1
AUR62003302 Chenopodium quinoa HOM05D006130 ORTHO05D007491 2.6e-09 68.2 118 33.9
FvH4_1g22740 Fragaria vesca HOM05D006130 ORTHO05D007491 2.6e-09 68.2 118 32.2
FAN19G1269 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.6e-09 68.2 118 32.2
FAN23G0816 Fragaria x ananassa HOM05D006130 ORTHO05D007491 2.6e-09 68.2 118 32.2
HanXRQChr14g0445741 Helianthus annuus HOM05D006130 ORTHO05D007491 2.6e-09 68.2 121 33.9
Peaxi162Scf00106g00208 Petunia axillaris HOM05D006130 ORTHO05D007491 2.6e-09 68.2 119 33.6
Prupe.6G171600 Prunus persica HOM05D006130 ORTHO05D007491 2.6e-09 68.2 118 33.9
QL06p031976 Quercus lobata HOM05D006130 ORTHO05D007491 2.6e-09 68.2 171 30.4
AUR62016283 Chenopodium quinoa HOM05D006130 ORTHO05D007491 3.4e-09 67.8 118 33.9
Eucgr.H04843 Eucalyptus grandis HOM05D006130 ORTHO05D007491 3.4e-09 67.8 113 33.6
Lalb_Chr11g0068091 Lupinus albus HOM05D006130 ORTHO05D007491 3.4e-09 67.8 125 32.8
Aqoxy7G04042 Aquilegia oxysepala HOM05D006130 ORTHO05D007491 4.4e-09 67.4 118 32.2
Thecc.01G113900 Theobroma cacao HOM05D006130 ORTHO05D007491 4.4e-09 67.4 118 34.7
Dinv19481 Davidia involucrata HOM05D006130 ORTHO05D007491 5.8e-09 67.0 121 32.2
Lsat_1_v5_gn_2_67140 Lactuca sativa HOM05D006130 ORTHO05D007491 5.8e-09 67.0 118 33.1
Nn5g28889 Nelumbo nucifera HOM05D006130 ORTHO05D007491 5.8e-09 67.0 118 30.5
GSVIVG01022236001 Vitis vinifera HOM05D006130 ORTHO05D007491 5.8e-09 67.0 149 30.2
Ciclev10026167m.g Citrus clementina HOM05D006130 ORTHO05D007491 7.5e-09 66.6 118 33.9
Lj2C566T4 Lonicera japonica HOM05D006130 ORTHO05D007491 7.5e-09 66.6 118 32.2
Os04g0640800 Oryza sativa ssp. japonica HOM05D006130 ORTHO05D007491 7.5e-09 66.6 126 29.4
PRCOL_00001898 Prasinoderma coloniale HOM05D006130 ORTHO05D007491 7.5e-09 66.6 132 36.4
PGR102G0730 Punica granatum HOM05D006130 ORTHO05D007491 7.5e-09 66.6 119 33.6
Duzib264G0573 Durio zibethinus HOM05D006130 ORTHO05D007491 9.8e-09 66.2 118 33.9
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 9.8e-09 66.2 118 33.1
Cfa002758 Carpinus fangiana HOM05D006130 ORTHO05D007491 1.3e-08 65.9 118 33.9
Gohir.D11G231600 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.3e-08 65.9 118 33.9
Sed0017229 Sechium edule HOM05D006130 ORTHO05D007491 1.3e-08 65.9 123 32.5
VMungo1309G1738 Vigna mungo HOM05D006130 ORTHO05D007491 1.3e-08 65.9 125 32.0
CDE09G1360 Ceratophyllum demersum HOM05D006130 ORTHO05D007491 1.7e-08 65.5 126 31.7
ECA238G3253 Erigeron canadensis HOM05D006130 ORTHO05D007491 1.7e-08 65.5 118 32.2
Rhsim08G0006100 Rhododendron simsii HOM05D006130 ORTHO05D007491 1.7e-08 65.5 118 33.1
Duzib147G1554 Durio zibethinus HOM05D006130 ORTHO05D007491 2.2e-08 65.1 115 34.8
Phvul.009G139000 Phaseolus vulgaris HOM05D006130 ORTHO05D007491 2.2e-08 65.1 163 28.2
Gorai.007G244700 Gossypium raimondii HOM05D006130 ORTHO05D007491 3.7e-08 64.3 122 33.6
PSO210G3121 Papaver somniferum HOM05D006130 ORTHO05D007491 3.7e-08 64.3 150 29.3
vmacro18637 Vaccinium macrocarpon HOM05D006130 ORTHO05D007491 3.7e-08 64.3 115 33.9
Actinidia12211 Actinidia chinensis HOM05D006130 ORTHO05D007491 4.9e-08 63.9 101 35.6
Eucgr.H04852 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.9e-08 63.9 113 32.7
Eucgr.H04859 Eucalyptus grandis HOM05D006130 ORTHO05D007491 4.9e-08 63.9 113 32.7
PSO170G1695 Papaver somniferum HOM05D006130 ORTHO05D007491 4.9e-08 63.9 150 29.3
Atru.chr4.339 Acer truncatum HOM05D006130 ORTHO05D007491 8.3e-08 63.2 158 30.4
MCO11G927 Micromonas commoda HOM05D006130 ORTHO05D007491 8.3e-08 63.2 632 24.8
GSVIVG01022231001 Vitis vinifera HOM05D006130 ORTHO05D007491 8.3e-08 63.2 115 35.7
Eucgr.H04846 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.4e-07 62.4 110 33.6
Eucgr.H04856 Eucalyptus grandis HOM05D006130 ORTHO05D007491 1.9e-07 62.0 115 33.0
Gohir.A11G197900 Gossypium hirsutum HOM05D006130 ORTHO05D007491 1.9e-07 62.0 121 33.9
Potri.007G080500 Populus trichocarpa HOM05D006130 ORTHO05D007491 1.9e-07 62.0 152 30.9
PRCOL_00005294 Prasinoderma coloniale HOM05D005189 ORTHO05D006093 1.9e-07 62.0 128 35.2
Sabra07G0067600 Salix brachista HOM05D006130 ORTHO05D007491 1.9e-07 62.0 113 34.5
CsaV3_6G002440 Cucumis sativus L. HOM05D006130 ORTHO05D007491 2.4e-07 61.6 125 31.2
Eucgr.H04861 Eucalyptus grandis HOM05D006130 ORTHO05D007491 2.4e-07 61.6 113 32.7
CSS0050489 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 3.2e-07 61.2 117 32.5
COL.COLO4_11003 Corchorus olitorius HOM05D006130 ORTHO05D007491 4.1e-07 60.8 115 33.0
FAN26G2148 Fragaria x ananassa HOM05D006130 ORTHO05D007491 4.1e-07 60.8 73 39.7
SalBow5G2487 Salvia bowleyana HOM05D006130 ORTHO05D007491 4.1e-07 60.8 120 30.8
MELO3C025043.2 Cucumis melo HOM05D006130 ORTHO05D007491 5.4e-07 60.5 125 31.2
MBI05_g29098_MAGBIO Magnolia biondii HOM05D006130 ORTHO05D007491 9.2e-07 59.7 118 28.8
Migut.L00069 Erythranthe guttata HOM05D006130 ORTHO05D007491 1.6e-06 58.9 130 30.8
ATR0665G503 Amborella trichopoda HOM05D006130 ORTHO05D007491 2.7e-06 58.2 126 29.4
HanXRQChr04g0114701 Helianthus annuus HOM05D005189 ORTHO05D006093 2.7e-06 58.2 131 30.5
MBI19_g05150_MAGBIO Magnolia biondii HOM05D005189 ORTHO05D006093 3.5e-06 57.8 102 36.3
Oeu028522.1 Olea europaea HOM05D006130 ORTHO05D007491 3.5e-06 57.8 118 30.5
Actinidia25825 Actinidia chinensis HOM05D005189 ORTHO05D006093 6.0e-06 57.0 136 32.4
ClCG11G005560 Citrullus lanatus HOM05D006130 ORTHO05D007491 6.0e-06 57.0 81 35.8
Cc07_g16320 Coffea canephora HOM05D006130 ORTHO05D007491 6.0e-06 57.0 116 31.9
Hma1.2p1_0375F.1_g138770 Hydrangea macrophylla HOM05D006130 ORTHO05D007491 6.0e-06 57.0 110 30.9
Eucgr.D00338 Eucalyptus grandis HOM05D005189 ORTHO05D006093 7.8e-06 56.6 104 37.5
Nitab4.5_0015691g0010 Nicotiana tabacum HOM05D006130 ORTHO05D007491 7.8e-06 56.6 101 31.7


User provided reference genes

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