Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g603100 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 2.0e-280 968.4 458 100.0
Cre09.g413850 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 1.3e-202 709.9 423 74.7
Cre03.g203550 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 1.6e-141 506.9 509 51.9
Cre04.g224550 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 8.9e-116 421.4 434 47.5
Cre01.g007550 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 1.6e-109 400.6 471 44.2
Cre11.g467670 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 6.9e-92 342.0 421 43.0
Cre11.g467666 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 5.6e-86 322.4 440 42.3
Cre03.g204465 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 3.8e-74 283.1 431 39.7
Cre17.g744097 Chlamydomonas reinhardtii HOM05D015169 ORTHO05D012662 6.9e-68 262.3 358 39.1
Cre16.g694800 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 3.6e-24 117.1 301 28.6
Cre09.g387652 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 1.0e-23 115.5 341 28.2
Cre16.g694750 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 1.1e-20 105.5 328 26.2
Cre17.g740550 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 8.6e-18 95.9 220 29.1
Cre09.g414150 Chlamydomonas reinhardtii HOM05D009640 ORTHO05D012506 3.3e-17 94.0 193 28.5
Cre14.g621800 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 4.7e-16 90.1 401 23.4
Cre12.g522750 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 4.9e-13 80.1 216 28.7
Cre06.g270400 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 6.4e-13 79.7 132 31.8
Thhalv10023375m.g Eutrema salsugineum HOM05D000683 ORTHO05D000507 2.4e-12 77.8 409 23.7
A09p13630 Brassica napus HOM05D000683 ORTHO05D000507 2.0e-11 74.7 433 22.6
Rhsim03G0182100 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.7e-10 71.6 142 31.0
BraA09t37016Z Brassica rapa HOM05D000683 ORTHO05D000507 2.3e-10 71.2 431 22.5
BolC9t54539H Brassica oleracea HOM05D000683 ORTHO05D000507 3.0e-10 70.9 406 22.9
TWI59G0865 Tripterygium wilfordii HOM05D000683 ORTHO05D000507 6.6e-10 69.7 150 28.7
Solyc03g025760.4 Solanum lycopersicum HOM05D000683 ORTHO05D000507 1.1e-09 68.9 121 30.6
Sopen03g004580 Solanum pennellii HOM05D000683 ORTHO05D000507 1.1e-09 68.9 121 30.6
PGSC0003DMG400014295 Solanum tuberosum HOM05D000683 ORTHO05D000507 1.1e-09 68.9 121 30.6
Cre12.g546452 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 1.5e-09 68.6 296 23.3
Cre09.g391000 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 2.5e-09 67.8 132 30.3
Cre09.g413900 Chlamydomonas reinhardtii HOM05D009640 ORTHO05D012506 2.5e-09 67.8 209 26.8
Cre09.g415300 Chlamydomonas reinhardtii HOM05D009640 ORTHO05D012506 2.5e-09 67.8 113 33.6
SMO118G0070 Selaginella moellendorffii HOM05D000683 ORTHO05D000507 2.5e-09 67.8 222 24.8
TWI15G0516 Tripterygium wilfordii HOM05D000683 ORTHO05D000507 2.5e-09 67.8 229 24.5
DCAR_002793 Daucus carota HOM05D000683 ORTHO05D000507 3.3e-09 67.4 177 24.3
Eucgr.I01244 Eucalyptus grandis HOM05D000683 ORTHO05D000507 4.3e-09 67.0 354 22.0
Rhsim03G0181100 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.3e-09 67.0 140 28.6
Rhsim03G0181200 Rhododendron simsii HOM05D000683 ORTHO05D000507 4.3e-09 67.0 140 28.6
TWI60G0554 Tripterygium wilfordii HOM05D000683 ORTHO05D000507 5.6e-09 66.6 303 22.8
C09p16290 Brassica napus HOM05D000683 ORTHO05D000507 9.5e-09 65.9 172 25.6
Thecc.01G362400 Theobroma cacao HOM05D000683 ORTHO05D000507 9.5e-09 65.9 289 23.9
TWI59G1058 Tripterygium wilfordii HOM05D000683 ORTHO05D000507 9.5e-09 65.9 151 28.5
DCAR_005844 Daucus carota HOM05D000683 ORTHO05D000507 1.2e-08 65.5 159 25.2
Cre24.g755947 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 1.6e-08 65.1 136 29.4
Medtr8g031450 Medicago truncatula HOM05D000683 ORTHO05D000507 1.6e-08 65.1 372 21.2
Rhsim03G0181500 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.6e-08 65.1 121 30.6
BcaC04g22698 Brassica carinata HOM05D000683 ORTHO05D000507 2.1e-08 64.7 172 25.0
Nitab4.5_0001842g0040 Nicotiana tabacum HOM05D000683 ORTHO05D000507 2.1e-08 64.7 121 28.9
Thhalv10005889m.g Eutrema salsugineum HOM05D000683 ORTHO05D000507 2.8e-08 64.3 374 21.7
Cc02_g02920 Coffea canephora HOM05D000683 ORTHO05D000507 3.6e-08 63.9 146 26.7
Nitab4.5_0002117g0030 Nicotiana tabacum HOM05D000683 ORTHO05D000507 3.6e-08 63.9 114 29.8
Solyc03g025770.4 Solanum lycopersicum HOM05D000683 ORTHO05D000507 3.6e-08 63.9 122 28.7
Sopen03g004590 Solanum pennellii HOM05D000683 ORTHO05D000507 3.6e-08 63.9 122 28.7
QL08p049262 Quercus lobata HOM05D000683 ORTHO05D000507 4.7e-08 63.5 126 28.6
FAN10G2267 Fragaria x ananassa HOM05D000683 ORTHO05D000507 6.2e-08 63.2 126 28.6
AL2G11810 Arabidopsis lyrata HOM05D000683 ORTHO05D000507 8.0e-08 62.8 138 27.5
Nn6g33489 Nelumbo nucifera HOM05D000683 ORTHO05D000507 8.0e-08 62.8 356 19.9
SalBow2G0449 Salvia bowleyana HOM05D000683 ORTHO05D000507 8.0e-08 62.8 140 27.9
CAN.G307.2 Capsicum annuum HOM05D000683 ORTHO05D000507 1.1e-07 62.4 121 28.9
Cc08_g05850 Coffea canephora HOM05D000683 ORTHO05D000507 1.1e-07 62.4 130 28.5
QL08p049426 Quercus lobata HOM05D000683 ORTHO05D000507 1.1e-07 62.4 135 28.1
Rhsim03G0184400 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.1e-07 62.4 203 26.6
Rhsim03G0184500 Rhododendron simsii HOM05D000683 ORTHO05D000507 1.1e-07 62.4 127 28.3
Zm00001eb075570 Zea mays HOM05D000683 ORTHO05D000507 1.1e-07 62.4 146 28.8
AT3G61290 Arabidopsis thaliana HOM05D000683 ORTHO05D000507 1.4e-07 62.0 365 22.5
Duzib068G0335 Durio zibethinus HOM05D000683 ORTHO05D000507 1.4e-07 62.0 121 28.1
FAN06G3869 Fragaria x ananassa HOM05D000683 ORTHO05D000507 1.4e-07 62.0 119 29.4
Peaxi162Scf00444g00859 Petunia axillaris HOM05D000683 ORTHO05D000507 1.4e-07 62.0 119 26.9
GSVIVG01026877001 Vitis vinifera HOM05D000683 ORTHO05D000507 1.4e-07 62.0 133 28.6
CSS0020236 Camellia sinensis var. sinensis HOM05D000683 ORTHO05D000507 1.8e-07 61.6 121 27.3
FvH4_7g13870 Fragaria vesca HOM05D000683 ORTHO05D000507 1.8e-07 61.6 119 29.4
vmacro06678 Vaccinium macrocarpon HOM05D000683 ORTHO05D000507 1.8e-07 61.6 121 28.1
Nitab4.5_0001842g0010 Nicotiana tabacum HOM05D000683 ORTHO05D000507 2.3e-07 61.2 119 26.9
QL08p049406 Quercus lobata HOM05D000683 ORTHO05D000507 2.3e-07 61.2 135 28.1
Carub.0002s0146 Capsella rubella HOM05D000683 ORTHO05D000507 3.1e-07 60.8 147 26.5
Ca_23657_v3 Cicer arietinum L. HOM05D000683 ORTHO05D000507 3.1e-07 60.8 271 22.5
Hma1.2p1_1922F.1_g307580 Hydrangea macrophylla HOM05D000683 ORTHO05D000507 3.1e-07 60.8 144 27.8
Thecc.03G177200 Theobroma cacao HOM05D000683 ORTHO05D000507 3.1e-07 60.8 121 27.3
A09p53350 Brassica napus HOM05D000683 ORTHO05D000507 4.0e-07 60.5 378 22.0
C08p36180 Brassica napus HOM05D000683 ORTHO05D000507 4.0e-07 60.5 375 21.3
BolC8t51200H Brassica oleracea HOM05D000683 ORTHO05D000507 4.0e-07 60.5 375 21.3
BraA09t40760Z Brassica rapa HOM05D000683 ORTHO05D000507 4.0e-07 60.5 378 22.0
Cc02_g02910 Coffea canephora HOM05D000683 ORTHO05D000507 4.0e-07 60.5 129 28.7
Cc02_g02940 Coffea canephora HOM05D000683 ORTHO05D000507 4.0e-07 60.5 140 27.1
MBI18_g37163_MAGBIO Magnolia biondii HOM05D000683 ORTHO05D000507 4.0e-07 60.5 115 30.4
Carub.0005s2795 Capsella rubella HOM05D000683 ORTHO05D000507 5.2e-07 60.1 375 23.2
CARHR171590 Cardamine hirsuta HOM05D000683 ORTHO05D000507 5.2e-07 60.1 375 22.1
DCAR_010307 Daucus carota HOM05D000683 ORTHO05D000507 5.2e-07 60.1 121 28.1
Duzib138G0277 Durio zibethinus HOM05D000683 ORTHO05D000507 5.2e-07 60.1 119 29.4
PSO675G6829 Papaver somniferum HOM05D000683 ORTHO05D000507 5.2e-07 60.1 131 27.5
SGA_v2.0_scaffold113G31724 Striga asiatica HOM05D000683 ORTHO05D000507 5.2e-07 60.1 121 28.1
C08p36150 Brassica napus HOM05D000683 ORTHO05D000507 6.8e-07 59.7 376 21.3
BolC8t51197H Brassica oleracea HOM05D000683 ORTHO05D000507 6.8e-07 59.7 376 21.3
CDE11G0989 Ceratophyllum demersum HOM05D000683 ORTHO05D000507 6.8e-07 59.7 114 28.1
Cre08.g367750 Chlamydomonas reinhardtii HOM05D009640 ORTHO05D012506 6.8e-07 59.7 200 24.5
Dinv28438 Davidia involucrata HOM05D000683 ORTHO05D000507 6.8e-07 59.7 140 27.1
FAN01G1482 Fragaria x ananassa HOM05D000683 ORTHO05D000507 6.8e-07 59.7 119 28.6
Hund11745 Selenicereus undatus HOM05D000683 ORTHO05D000507 8.9e-07 59.3 121 28.1
Sc13g0008710 Simmondsia chinensis HOM05D000683 ORTHO05D000507 8.9e-07 59.3 140 26.4
CANSAT56G3307 Cannabis sativa HOM05D000683 ORTHO05D000507 1.2e-06 58.9 119 26.9
DCAR_010306 Daucus carota HOM05D000683 ORTHO05D000507 1.2e-06 58.9 115 29.6
GSVIVG01028968001 Vitis vinifera HOM05D000683 ORTHO05D000507 1.2e-06 58.9 146 24.7
GSVIVG01019779001 Vitis vinifera HOM05D000683 ORTHO05D000507 1.5e-06 58.5 140 26.4
EL10Ac3g05637 Beta vulgaris HOM05D000683 ORTHO05D000507 2.0e-06 58.2 139 25.9
Gorai.004G157700 Gossypium raimondii HOM05D000683 ORTHO05D000507 2.0e-06 58.2 119 28.6
BraA09t40762Z Brassica rapa HOM05D000683 ORTHO05D000507 2.6e-06 57.8 377 21.2
FvH4_5g02040 Fragaria vesca HOM05D000683 ORTHO05D000507 2.6e-06 57.8 118 26.3
Lj2g0025752 Lotus japonicus HOM05D000683 ORTHO05D000507 2.6e-06 57.8 139 25.2
MSTRG.89 Avicennia marina HOM05D000683 ORTHO05D000507 3.4e-06 57.4 114 28.1
Gohir.D08G151800 Gossypium hirsutum HOM05D000683 ORTHO05D000507 3.4e-06 57.4 119 27.7
Sabra14G0059400 Salix brachista HOM05D000683 ORTHO05D000507 3.4e-06 57.4 172 25.0
GSVIVG01028972001 Vitis vinifera HOM05D000683 ORTHO05D000507 3.4e-06 57.4 121 26.4
Cc02_g02930 Coffea canephora HOM05D000683 ORTHO05D000507 4.4e-06 57.0 129 27.9
Lj2g0012068 Lotus japonicus HOM05D000683 ORTHO05D000507 4.4e-06 57.0 139 25.2
Medtr7g076860 Medicago truncatula HOM05D000683 ORTHO05D000507 4.4e-06 57.0 113 25.7
Prupe.2G164900 Prunus persica HOM05D000683 ORTHO05D000507 4.4e-06 57.0 135 24.4
FAN04G1906 Fragaria x ananassa HOM05D000683 ORTHO05D000507 5.8e-06 56.6 160 22.5
Os04g0534000 Oryza sativa ssp. japonica HOM05D000683 ORTHO05D000507 5.8e-06 56.6 123 27.6
VMungo0951G0001 Vigna mungo HOM05D000683 ORTHO05D000507 5.8e-06 56.6 136 26.5
Carub.0005s2794 Capsella rubella HOM05D000683 ORTHO05D000507 7.5e-06 56.2 110 27.3
CARHR171570 Cardamine hirsuta HOM05D000683 ORTHO05D000507 7.5e-06 56.2 123 26.0
SMO111G0041 Selaginella moellendorffii HOM05D000683 ORTHO05D000507 7.5e-06 56.2 130 26.2
Thecc.03G276300 Theobroma cacao HOM05D000683 ORTHO05D000507 7.5e-06 56.2 114 28.1
Cre08.g380650 Chlamydomonas reinhardtii HOM05D014096 ORTHO05D012662 9.8e-06 55.8 195 23.6
Duzib205G0378 Durio zibethinus HOM05D000683 ORTHO05D000507 9.8e-06 55.8 122 25.4
FAN18G0040 Fragaria x ananassa HOM05D000683 ORTHO05D000507 9.8e-06 55.8 148 24.3
Gohir.D12G229700 Gossypium hirsutum HOM05D000683 ORTHO05D000507 9.8e-06 55.8 114 27.2
Gorai.008G246000 Gossypium raimondii HOM05D000683 ORTHO05D000507 9.8e-06 55.8 114 27.2
SMO146G0040 Selaginella moellendorffii HOM05D000683 ORTHO05D000507 9.8e-06 55.8 120 27.5
TAR375G1035 Trochodendron aralioides HOM05D000683 ORTHO05D000507 9.8e-06 55.8 121 26.4
GSVIVG01026876001 Vitis vinifera HOM05D000683 ORTHO05D000507 9.8e-06 55.8 114 28.1


User provided reference genes

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