Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g590400 Chlamydomonas reinhardtii HOM05D002274 ORTHO05D044311 1.1e-186 656.4 318 100.0
MCO05G741 Micromonas commoda HOM05D002274 ORTHO05D044311 1.1e-16 91.7 204 32.8
CSS0011717 Camellia sinensis var. sinensis HOM05D002274 ORTHO05D002460 5.8e-13 79.3 121 36.4
CSS0019974 Camellia sinensis var. sinensis HOM05D002274 ORTHO05D002460 5.8e-13 79.3 121 36.4
AUR62019389 Chenopodium quinoa HOM05D002274 ORTHO05D002460 3.7e-12 76.6 128 35.2
Migut.F00222 Erythranthe guttata HOM05D002274 ORTHO05D002460 3.7e-12 76.6 128 35.9
AUR62006103 Chenopodium quinoa HOM05D002274 ORTHO05D002460 4.9e-12 76.3 128 35.2
Actinidia03165 Actinidia chinensis HOM05D002274 ORTHO05D002460 6.4e-12 75.9 122 35.2
Mapoly0030s0062 Marchantia polymorpha HOM05D002274 ORTHO05D002460 6.4e-12 75.9 139 33.1
Rhsim03G0208100 Rhododendron simsii HOM05D002274 ORTHO05D002460 6.4e-12 75.9 121 35.5
vmacro06537 Vaccinium macrocarpon HOM05D002274 ORTHO05D002460 8.3e-12 75.5 120 35.8
Cc02_g01640 Coffea canephora HOM05D002274 ORTHO05D002460 1.1e-11 75.1 135 34.8
Nn3g18999 Nelumbo nucifera HOM05D002274 ORTHO05D002460 1.9e-11 74.3 128 36.7
Actinidia08642 Actinidia chinensis HOM05D002274 ORTHO05D002460 2.4e-11 73.9 128 37.5
Peaxi162Scf00618g00415 Petunia axillaris HOM05D002274 ORTHO05D002460 2.4e-11 73.9 146 30.1
A03p57590 Brassica napus HOM05D002274 ORTHO05D002460 3.2e-11 73.6 128 33.6
BraA03t14826Z Brassica rapa HOM05D002274 ORTHO05D002460 3.2e-11 73.6 128 33.6
vmacro00996 Vaccinium macrocarpon HOM05D002274 ORTHO05D002460 5.4e-11 72.8 122 35.2
Sc13g0009800 Simmondsia chinensis HOM05D002274 ORTHO05D002460 7.0e-11 72.4 122 35.2
Actinidia34214 Actinidia chinensis HOM05D002274 ORTHO05D002460 9.2e-11 72.0 128 35.9
Hma1.2p1_0404F.1_g145460 Hydrangea macrophylla HOM05D002274 ORTHO05D002460 9.2e-11 72.0 121 34.7
Lalb_Chr11g0066831 Lupinus albus HOM05D002274 ORTHO05D002460 9.2e-11 72.0 133 33.1
DCAR_020317 Daucus carota HOM05D002274 ORTHO05D002460 1.6e-10 71.2 115 33.9
BolC7t46059H Brassica oleracea HOM05D002274 ORTHO05D002460 2.1e-10 70.9 128 32.8
COL.COLO4_11270 Corchorus olitorius HOM05D002274 ORTHO05D002460 2.1e-10 70.9 128 33.6
COL.COLO4_16870 Corchorus olitorius HOM05D002274 ORTHO05D002460 2.1e-10 70.9 116 34.5
Haze_08077 Corylus avellana HOM05D002274 ORTHO05D002460 2.1e-10 70.9 122 32.8
Gorai.004G111700 Gossypium raimondii HOM05D002274 ORTHO05D002460 2.1e-10 70.9 128 31.2
Nitab4.5_0009776g0010 Nicotiana tabacum HOM05D002274 ORTHO05D002460 2.7e-10 70.5 116 35.3
HPP92_016906 Vanilla planifolia HOM05D002274 ORTHO05D002460 2.7e-10 70.5 122 32.8
CARHR027440 Cardamine hirsuta HOM05D002274 ORTHO05D002460 3.5e-10 70.1 128 32.8
COL.COLO4_16864 Corchorus olitorius HOM05D002274 ORTHO05D002460 3.5e-10 70.1 114 33.3
VMungo1309G1312 Vigna mungo HOM05D002274 ORTHO05D002460 3.5e-10 70.1 128 34.4
CARHR266530 Cardamine hirsuta HOM05D002274 ORTHO05D002460 4.6e-10 69.7 128 31.2
COL.COLO4_16869 Corchorus olitorius HOM05D002274 ORTHO05D002460 4.6e-10 69.7 114 33.3
Peaxi162Scf00548g00005 Petunia axillaris HOM05D002274 ORTHO05D002460 4.6e-10 69.7 116 34.5
Cfa012575 Carpinus fangiana HOM05D002274 ORTHO05D002460 6.0e-10 69.3 122 32.0
Cc03_g08340 Coffea canephora HOM05D002274 ORTHO05D002460 6.0e-10 69.3 116 32.8
Haze_08060 Corylus avellana HOM05D002274 ORTHO05D002460 6.0e-10 69.3 122 32.0
Gohir.D08G107440 Gossypium hirsutum HOM05D002274 ORTHO05D002460 6.0e-10 69.3 128 30.5
THA.LOC104813276 Tarenaya hassleriana HOM05D002274 ORTHO05D002460 6.0e-10 69.3 128 33.6
Thecc.05G017600 Theobroma cacao HOM05D002274 ORTHO05D002460 6.0e-10 69.3 116 35.3
TAR636G3064 Trochodendron aralioides HOM05D002274 ORTHO05D002460 7.8e-10 68.9 199 26.6
Lj1C1016T2 Lonicera japonica HOM05D002274 ORTHO05D002460 1.0e-09 68.6 122 33.6
Oeu046104.1 Olea europaea HOM05D002274 ORTHO05D002460 1.0e-09 68.6 134 32.8
Potri.015G013900 Populus trichocarpa HOM05D002274 ORTHO05D002460 1.0e-09 68.6 114 33.3
SalBow2G3115 Salvia bowleyana HOM05D002274 ORTHO05D002460 1.0e-09 68.6 135 32.6
SalBow7G0807 Salvia bowleyana HOM05D002274 ORTHO05D002460 1.0e-09 68.6 135 32.6
Solyc02g062410.2 Solanum lycopersicum HOM05D002274 ORTHO05D002460 1.0e-09 68.6 116 34.5
TWI14G0026 Tripterygium wilfordii HOM05D002274 ORTHO05D002460 1.0e-09 68.6 128 34.4
GSVIVG01038706001 Vitis vinifera HOM05D002274 ORTHO05D002460 1.0e-09 68.6 128 35.2
CiPaw.05G251200 Carya illinoinensis HOM05D002274 ORTHO05D002460 1.3e-09 68.2 128 32.0
Pp3c11_14270 Physcomitrium patens HOM05D002274 ORTHO05D002460 1.3e-09 68.2 140 30.7
Prupe.2G310800 Prunus persica HOM05D002274 ORTHO05D002460 1.3e-09 68.2 122 31.1
AagrBONN_evm.TU.Sc2ySwM_368.690 Anthoceros agrestis HOM05D002274 ORTHO05D002460 1.7e-09 67.8 128 32.8
MSTRG.53 Avicennia marina HOM05D002274 ORTHO05D002460 1.7e-09 67.8 128 34.4
Cfa016219 Carpinus fangiana HOM05D002274 ORTHO05D002460 1.7e-09 67.8 115 30.4
Sopen02g013410 Solanum pennellii HOM05D002274 ORTHO05D002460 1.7e-09 67.8 114 34.2
PGSC0003DMG400046575 Solanum tuberosum HOM05D002274 ORTHO05D002460 1.7e-09 67.8 116 34.5
Atru.chr2.1742 Acer truncatum HOM05D002274 ORTHO05D002460 2.3e-09 67.4 159 27.7
arahy.Tifrunner.gnm1.ann1.858FVG Arachis hypogaea HOM05D002274 ORTHO05D002460 2.3e-09 67.4 128 32.0
arahy.Tifrunner.gnm1.ann1.REMA0B Arachis hypogaea HOM05D002274 ORTHO05D002460 2.3e-09 67.4 128 32.0
Lj8P624T48 Lonicera japonica HOM05D002274 ORTHO05D002460 2.3e-09 67.4 122 32.8
MBI06_g08476_MAGBIO Magnolia biondii HOM05D002274 ORTHO05D002460 2.3e-09 67.4 128 32.8
Peaxi162Scf00047g00017 Petunia axillaris HOM05D002274 ORTHO05D002460 2.3e-09 67.4 115 33.0
Rhsim12G0007900 Rhododendron simsii HOM05D002274 ORTHO05D002460 2.3e-09 67.4 172 30.2
Thecc.03G197600 Theobroma cacao HOM05D002274 ORTHO05D002460 2.3e-09 67.4 128 33.6
CANSAT21G2592 Cannabis sativa HOM05D002274 ORTHO05D002460 3.0e-09 67.0 128 31.2
PSO063G4578 Papaver somniferum HOM05D002274 ORTHO05D002460 3.0e-09 67.0 128 31.2
PSO063G5049 Papaver somniferum HOM05D002274 ORTHO05D002460 3.0e-09 67.0 128 31.2
Ca_12807_v3 Cicer arietinum L. HOM05D002274 ORTHO05D002460 3.9e-09 66.6 128 32.0
Dinv35328 Davidia involucrata HOM05D002274 ORTHO05D002460 3.9e-09 66.6 134 30.6
Gohir.D09G179200 Gossypium hirsutum HOM05D002274 ORTHO05D002460 3.9e-09 66.6 120 32.5
Gorai.006G201200 Gossypium raimondii HOM05D002274 ORTHO05D002460 3.9e-09 66.6 120 32.5
Lj1g0028241 Lotus japonicus HOM05D002274 ORTHO05D002460 3.9e-09 66.6 122 32.0
Solyc09g092200.3 Solanum lycopersicum HOM05D002274 ORTHO05D002460 3.9e-09 66.6 116 33.6
TWI39G0853 Tripterygium wilfordii HOM05D002274 ORTHO05D002460 3.9e-09 66.6 128 32.8
Duzib068G0874 Durio zibethinus HOM05D002274 ORTHO05D002460 5.1e-09 66.2 128 31.2
Gohir.A09G184400 Gossypium hirsutum HOM05D002274 ORTHO05D002460 5.1e-09 66.2 120 32.5
Lalb_Chr08g0240281 Lupinus albus HOM05D002274 ORTHO05D002460 5.1e-09 66.2 128 32.0
PSO063G0851 Papaver somniferum HOM05D002274 ORTHO05D002460 5.1e-09 66.2 128 30.5
Pp3c1_7900 Physcomitrium patens HOM05D002274 ORTHO05D002460 5.1e-09 66.2 137 30.7
CBR_g17150 Chara braunii HOM05D002274 ORTHO05D002460 6.6e-09 65.9 122 32.0
Eucgr.A01460 Eucalyptus grandis HOM05D002274 ORTHO05D002460 6.6e-09 65.9 128 32.8
Gohir.D12G251100 Gossypium hirsutum HOM05D002274 ORTHO05D002460 6.6e-09 65.9 128 31.2
Gorai.008G269200 Gossypium raimondii HOM05D002274 ORTHO05D002460 6.6e-09 65.9 128 31.2
PSO170G6345 Papaver somniferum HOM05D002274 ORTHO05D002460 6.6e-09 65.9 128 30.5
RcHm_v2.0_Chr3g0471811 Rosa chinensis HOM05D002274 ORTHO05D002460 6.6e-09 65.9 122 31.1
TAR629G1311 Trochodendron aralioides HOM05D002274 ORTHO05D002460 6.6e-09 65.9 128 32.8
CAN.G1565.14 Capsicum annuum HOM05D002274 ORTHO05D002460 8.6e-09 65.5 114 32.5
Peaxi162Scf00377g00093 Petunia axillaris HOM05D002274 ORTHO05D002460 8.6e-09 65.5 122 29.5
Sed0026048 Sechium edule HOM05D002274 ORTHO05D002460 8.6e-09 65.5 152 28.9
Duzib205G1597 Durio zibethinus HOM05D002274 ORTHO05D002460 1.1e-08 65.1 128 32.8
MD01G1220500 Malus domestica HOM05D002274 ORTHO05D002460 1.1e-08 65.1 143 28.0
MELO3C005884.2 Cucumis melo HOM05D002274 ORTHO05D002460 1.5e-08 64.7 135 31.1
Gohir.A12G250300 Gossypium hirsutum HOM05D002274 ORTHO05D002460 1.5e-08 64.7 128 30.5
Potri.012G014100 Populus trichocarpa HOM05D002274 ORTHO05D002460 1.5e-08 64.7 122 32.0
SMO347G0058 Selaginella moellendorffii HOM05D002274 ORTHO05D002460 1.5e-08 64.7 117 29.9
FvH4_1g23100 Fragaria vesca HOM05D002274 ORTHO05D002460 1.9e-08 64.3 118 31.4
FAN19G1914 Fragaria x ananassa HOM05D002274 ORTHO05D002460 1.9e-08 64.3 121 30.6
FAN28G0722 Fragaria x ananassa HOM05D002274 ORTHO05D002460 1.9e-08 64.3 201 24.9
Peaxi162Scf00047g00134 Petunia axillaris HOM05D002274 ORTHO05D002460 2.5e-08 63.9 116 30.2
RcHm_v2.0_Chr2g0117791 Rosa chinensis HOM05D002274 ORTHO05D002460 2.5e-08 63.9 123 30.9
SEGI_06141 Sequoiadendron giganteum HOM05D002274 ORTHO05D002460 2.5e-08 63.9 122 32.0
SEGI_21263 Sequoiadendron giganteum HOM05D002274 ORTHO05D002460 2.5e-08 63.9 122 32.0
ClCG01G000450 Citrullus lanatus HOM05D002274 ORTHO05D002460 3.3e-08 63.5 135 31.1
Duzib205G0905 Durio zibethinus HOM05D002274 ORTHO05D002460 3.3e-08 63.5 121 33.1
FAN26G2750 Fragaria x ananassa HOM05D002274 ORTHO05D002460 3.3e-08 63.5 123 30.1
FAN28G2036 Fragaria x ananassa HOM05D002274 ORTHO05D002460 3.3e-08 63.5 123 30.1
Oeu059297.1 Olea europaea HOM05D002274 ORTHO05D002460 3.3e-08 63.5 122 33.6
SEGI_33295 Sequoiadendron giganteum HOM05D002274 ORTHO05D002460 3.3e-08 63.5 122 32.0
FAN23G0967 Fragaria x ananassa HOM05D002274 ORTHO05D002460 4.3e-08 63.2 144 28.5
Nitab4.5_0000208g0080 Nicotiana tabacum HOM05D002274 ORTHO05D002460 4.3e-08 63.2 116 32.8
Hund20996 Selenicereus undatus HOM05D002274 ORTHO05D002460 5.6e-08 62.8 128 32.8
TAR375G0604 Trochodendron aralioides HOM05D002274 ORTHO05D002460 5.6e-08 62.8 162 29.6
FAN19G0337 Fragaria x ananassa HOM05D002274 ORTHO05D002460 9.5e-08 62.0 123 30.1
PSO832G0550 Papaver somniferum HOM05D002274 ORTHO05D002460 9.5e-08 62.0 128 29.7
Cpa.g.sc3.79 Carica papaya HOM05D002274 ORTHO05D002460 1.2e-07 61.6 135 28.9
FvH4_1g24630 Fragaria vesca HOM05D002274 ORTHO05D002460 1.2e-07 61.6 115 29.6
CsaV3_5G000520 Cucumis sativus L. HOM05D002274 ORTHO05D002460 1.6e-07 61.2 128 30.5
MD07G1289500 Malus domestica HOM05D002274 ORTHO05D002460 1.6e-07 61.2 122 28.7
TAR375G0827 Trochodendron aralioides HOM05D002274 ORTHO05D002460 1.6e-07 61.2 140 30.0
CiPaw.11G102400 Carya illinoinensis HOM05D002274 ORTHO05D002460 4.7e-07 59.7 143 26.6
PRCOL_00000357 Prasinoderma coloniale HOM05D035943 ORTHO05D034510 1.1e-06 58.5 133 32.3
PSO832G1453 Papaver somniferum HOM05D002274 ORTHO05D002460 1.8e-06 57.8 128 28.9
Nitab4.5_0007828g0010 Nicotiana tabacum HOM05D002274 ORTHO05D002460 2.3e-06 57.4 116 32.8
Nitab4.5_0000697g0010 Nicotiana tabacum HOM05D002274 ORTHO05D002460 3.1e-06 57.0 116 31.9


User provided reference genes

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