Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g584750 Chlamydomonas reinhardtii HOM05D005534 ORTHO05D006642 1.1e-284 983.0 646 100.0
Aqoxy2G03821 Aquilegia oxysepala HOM05D005534 ORTHO05D006642 1.7e-83 314.7 346 49.7
Nitab4.5_0000731g0130 Nicotiana tabacum HOM05D005534 ORTHO05D006642 3.7e-83 313.5 349 50.1
Potri.013G101700 Populus trichocarpa HOM05D005534 ORTHO05D006642 3.7e-83 313.5 341 50.7
Sc19g0002770 Simmondsia chinensis HOM05D005534 ORTHO05D006642 1.1e-82 312.0 349 49.6
Cc00_g25290 Coffea canephora HOM05D005534 ORTHO05D006642 1.4e-82 311.6 348 49.4
Nn1g07947 Nelumbo nucifera HOM05D005534 ORTHO05D006642 1.4e-82 311.6 341 50.4
Zm00001eb411080 Zea mays HOM05D005534 ORTHO05D006642 1.4e-82 311.6 352 50.6
CDE02G4760 Ceratophyllum demersum HOM05D005534 ORTHO05D006642 1.8e-82 311.2 348 49.7
AUR62026718 Chenopodium quinoa HOM05D005534 ORTHO05D006642 1.8e-82 311.2 341 50.7
Nitab4.5_0006008g0020 Nicotiana tabacum HOM05D005534 ORTHO05D006642 2.4e-82 310.8 349 49.6
Eucgr.F04073 Eucalyptus grandis HOM05D005534 ORTHO05D006642 7.0e-82 309.3 346 50.0
QL09p004039 Quercus lobata HOM05D005534 ORTHO05D006642 7.0e-82 309.3 348 49.7
RcHm_v2.0_Chr7g0231231 Rosa chinensis HOM05D005534 ORTHO05D006642 1.2e-81 308.5 340 50.6
CsaV3_5G040210 Cucumis sativus L. HOM05D005534 ORTHO05D006642 2.6e-81 307.4 341 50.4
Glyma.04G257200 Glycine max HOM05D005534 ORTHO05D006642 2.6e-81 307.4 341 49.0
PGSC0003DMG401019416 Solanum tuberosum HOM05D005534 ORTHO05D006642 3.5e-81 307.0 341 50.1
TWI18G0032 Tripterygium wilfordii HOM05D005534 ORTHO05D006642 3.5e-81 307.0 346 50.3
CAN.G911.34 Capsicum annuum HOM05D005534 ORTHO05D006642 4.5e-81 306.6 341 49.6
Ciclev10020832m.g Citrus clementina HOM05D005534 ORTHO05D006642 4.5e-81 306.6 341 50.4
Mapoly0125s0040 Marchantia polymorpha HOM05D005534 ORTHO05D006642 4.5e-81 306.6 343 51.3
Duzib177G1179 Durio zibethinus HOM05D005534 ORTHO05D006642 5.9e-81 306.2 348 49.7
ClCG08G000650 Citrullus lanatus HOM05D005534 ORTHO05D006642 7.7e-81 305.8 341 50.1
Lalb_Chr07g0177551 Lupinus albus HOM05D005534 ORTHO05D006642 7.7e-81 305.8 341 50.1
PSO017G6214 Papaver somniferum HOM05D005534 ORTHO05D006642 1.0e-80 305.4 340 49.7
Manes.18G119700 Manihot esculenta HOM05D005534 ORTHO05D006642 1.3e-80 305.1 341 49.3
Solyc10g012160.3 Solanum lycopersicum HOM05D005534 ORTHO05D006642 1.3e-80 305.1 341 49.9
MD04G1240000 Malus domestica HOM05D005534 ORTHO05D006642 1.7e-80 304.7 341 49.9
MSTRG.6297 Avicennia marina HOM05D005534 ORTHO05D006642 2.2e-80 304.3 341 50.4
FvH4_5g33060 Fragaria vesca HOM05D005534 ORTHO05D006642 2.2e-80 304.3 340 50.0
Lj3g0019199 Lotus japonicus HOM05D005534 ORTHO05D006642 2.2e-80 304.3 341 50.4
Medtr3g005730 Medicago truncatula HOM05D005534 ORTHO05D006642 2.2e-80 304.3 341 50.1
THA.LOC104800087 Tarenaya hassleriana HOM05D005534 ORTHO05D006642 2.2e-80 304.3 344 50.0
Gohir.D13G120700 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.0e-80 303.1 348 48.6
ECA234G3974 Erigeron canadensis HOM05D005534 ORTHO05D006642 6.5e-80 302.8 358 48.9
Sopen10g005920 Solanum pennellii HOM05D005534 ORTHO05D006642 6.5e-80 302.8 341 49.6
GSVIVG01036434001 Vitis vinifera HOM05D005534 ORTHO05D006642 6.5e-80 302.8 341 50.1
Glyma.12G242500 Glycine max HOM05D005534 ORTHO05D006642 8.5e-80 302.4 343 49.0
QL09p002970 Quercus lobata HOM05D005534 ORTHO05D006642 8.5e-80 302.4 352 49.7
TAR381G0138 Trochodendron aralioides HOM05D005534 ORTHO05D006642 1.1e-79 302.0 341 50.4
Duzib177G1161 Durio zibethinus HOM05D005534 ORTHO05D006642 1.9e-79 301.2 349 49.6
MD15G1399100 Malus domestica HOM05D005534 ORTHO05D006642 1.9e-79 301.2 342 50.0
Thecc.08G173200 Theobroma cacao HOM05D005534 ORTHO05D006642 1.9e-79 301.2 349 48.1
Rhsim12G0004300 Rhododendron simsii HOM05D005534 ORTHO05D006642 2.5e-79 300.8 348 48.9
Hund26700 Selenicereus undatus HOM05D005534 ORTHO05D006642 2.5e-79 300.8 341 50.7
Haze_13929 Corylus avellana HOM05D005534 ORTHO05D006642 3.2e-79 300.4 361 48.2
Prupe.1G530500 Prunus persica HOM05D005534 ORTHO05D006642 5.5e-79 299.7 341 50.1
CiPaw.04G011000 Carya illinoinensis HOM05D005534 ORTHO05D006642 9.4e-79 298.9 341 49.0
MBI06_g06677_MAGBIO Magnolia biondii HOM05D005534 ORTHO05D006642 9.4e-79 298.9 339 50.1
MD08G1215200 Malus domestica HOM05D005534 ORTHO05D006642 9.4e-79 298.9 342 49.7
CSS0044704 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.2e-78 298.5 349 49.3
Migut.J01545 Erythranthe guttata HOM05D005534 ORTHO05D006642 1.2e-78 298.5 342 49.1
Lsat_1_v5_gn_5_78481 Lactuca sativa HOM05D005534 ORTHO05D006642 1.6e-78 298.1 341 49.9
Phvul.005G001600 Phaseolus vulgaris HOM05D005534 ORTHO05D006642 2.1e-78 297.7 343 48.4
Pp3c3_32560 Physcomitrium patens HOM05D005534 ORTHO05D006642 2.7e-78 297.4 366 47.3
TPR.G25542 Trifolium pratense HOM05D005534 ORTHO05D006642 3.6e-78 297.0 341 50.1
Actinidia23022 Actinidia chinensis HOM05D005534 ORTHO05D006642 4.7e-78 296.6 345 49.6
BcaNung06107 Brassica carinata HOM05D005534 ORTHO05D006642 4.7e-78 296.6 351 49.0
arahy.Tifrunner.gnm1.ann1.H1ATJ8 Arachis hypogaea HOM05D005534 ORTHO05D006642 6.1e-78 296.2 345 49.9
vmacro00924 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 6.1e-78 296.2 344 48.8
Peaxi162Scf00065g00017 Petunia axillaris HOM05D005534 ORTHO05D006642 8.0e-78 295.8 351 47.9
VMungo1080G0932 Vigna mungo HOM05D005534 ORTHO05D006642 1.0e-77 295.4 343 47.8
Gorai.013G134900 Gossypium raimondii HOM05D005534 ORTHO05D006642 1.4e-77 295.0 348 48.0
Sp1g20290 Schrenkiella parvula HOM05D005534 ORTHO05D006642 1.8e-77 294.7 344 48.5
Atru.chr13.2420 Acer truncatum HOM05D005534 ORTHO05D006642 3.0e-77 293.9 346 48.0
Carub.0001s2231 Capsella rubella HOM05D005534 ORTHO05D006642 3.0e-77 293.9 352 48.6
CARHR023160 Cardamine hirsuta HOM05D005534 ORTHO05D006642 3.0e-77 293.9 351 48.1
HPP92_005621 Vanilla planifolia HOM05D005534 ORTHO05D006642 4.0e-77 293.5 340 47.9
EL10Ac1g01529 Beta vulgaris HOM05D005534 ORTHO05D006642 1.1e-76 292.0 341 49.6
BcaNung06443 Brassica carinata HOM05D005534 ORTHO05D006642 1.1e-76 292.0 351 47.9
AL1G36350 Arabidopsis lyrata HOM05D005534 ORTHO05D006642 1.5e-76 291.6 351 48.1
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 1.5e-76 291.6 360 46.9
Thhalv10007396m.g Eutrema salsugineum HOM05D005534 ORTHO05D006642 2.0e-76 291.2 342 48.2
SalBow6G6434 Salvia bowleyana HOM05D005534 ORTHO05D006642 2.0e-76 291.2 365 46.8
AT1G22800 Arabidopsis thaliana HOM05D005534 ORTHO05D006642 4.4e-76 290.0 351 47.9
PGR044G1073 Punica granatum HOM05D005534 ORTHO05D006642 1.1e-74 285.4 379 44.6
A09p41950 Brassica napus HOM05D005534 ORTHO05D006642 2.4e-74 284.3 363 46.8
Ca_13980_v3 Cicer arietinum L. HOM05D005534 ORTHO05D006642 7.7e-73 279.3 261 55.9
BolC5t30885H Brassica oleracea HOM05D005534 ORTHO05D006642 1.0e-72 278.9 351 47.3
Dinv18373 Davidia involucrata HOM05D005534 ORTHO05D006642 2.2e-72 277.7 401 42.6
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 2.9e-72 277.3 261 54.8
arahy.Tifrunner.gnm1.ann1.A8RPUL Arachis hypogaea HOM05D005534 ORTHO05D006642 5.0e-72 276.6 393 44.0
PSO170G0367 Papaver somniferum HOM05D005534 ORTHO05D006642 8.5e-72 275.8 261 55.2
Psat1g000160 Pisum sativum HOM05D005534 ORTHO05D006642 1.1e-71 275.4 261 55.9
Gohir.A13G117400 Gossypium hirsutum HOM05D005534 ORTHO05D006642 1.5e-71 275.0 261 54.8
COL.COLO4_05589 Corchorus olitorius HOM05D005534 ORTHO05D006642 1.9e-71 274.6 352 46.0
SMO232G0033 Selaginella moellendorffii HOM05D005534 ORTHO05D006642 1.2e-70 271.9 345 43.5
BraA09t39683Z Brassica rapa HOM05D005534 ORTHO05D006642 3.6e-70 270.4 373 45.3
Oeu034751.1 Olea europaea HOM05D005534 ORTHO05D006642 1.4e-69 268.5 395 42.3
Oeu034752.2 Olea europaea HOM05D005534 ORTHO05D006642 1.4e-69 268.5 395 42.3
AUR62013571 Chenopodium quinoa HOM05D005534 ORTHO05D006642 2.8e-67 260.8 320 47.5
Aa31LG7G6790 Aethionema arabicum HOM05D005534 ORTHO05D006642 1.0e-64 252.3 364 43.1
C05p21900 Brassica napus HOM05D005534 ORTHO05D006642 6.5e-64 249.6 244 54.5
MELO3C022197.2 Cucumis melo HOM05D005534 ORTHO05D006642 8.5e-64 249.2 358 43.6
HPP92_005624 Vanilla planifolia HOM05D005534 ORTHO05D006642 2.5e-63 247.7 299 47.5
Sabra13G0088100 Salix brachista HOM05D005534 ORTHO05D006642 4.2e-63 246.9 235 56.2
SGA_v2.0_scaffold69G23189 Striga asiatica HOM05D005534 ORTHO05D006642 1.2e-60 238.8 281 48.4
unitig_899.g15650 Utricularia gibba HOM05D005534 ORTHO05D006642 1.1e-58 232.3 246 52.4
ATR0681G326 Amborella trichopoda HOM05D005534 ORTHO05D006642 1.8e-58 231.5 224 56.2
Sed0013677 Sechium edule HOM05D005534 ORTHO05D006642 2.3e-56 224.6 221 53.4
Gohir.A13G117500 Gossypium hirsutum HOM05D005534 ORTHO05D006642 5.0e-56 223.4 261 49.0
Lj1A290T42 Lonicera japonica HOM05D005534 ORTHO05D006642 5.0e-56 223.4 198 58.1
PRCOL_00005850 Prasinoderma coloniale HOM05D005534 ORTHO05D006642 1.5e-55 221.9 329 44.7
AagrBONN_evm.TU.Sc2ySwM_117.1319 Anthoceros agrestis HOM05D005534 ORTHO05D006642 5.6e-55 219.9 221 52.9
HPP92_005612 Vanilla planifolia HOM05D005534 ORTHO05D006642 1.2e-54 218.8 194 57.2
Potri.013G101900 Populus trichocarpa HOM05D005534 ORTHO05D006642 7.5e-52 209.5 214 52.3
vmacro22753 Vaccinium macrocarpon HOM05D005534 ORTHO05D006642 4.1e-50 203.8 310 43.5
SHI08987 Sapria himalayana HOM05D005534 ORTHO05D006642 1.2e-49 202.2 319 39.5
FAN18G2794 Fragaria x ananassa HOM05D005534 ORTHO05D006642 2.0e-44 184.9 302 40.1
Lj1A297T60 Lonicera japonica HOM05D005534 ORTHO05D006642 1.0e-40 172.6 156 57.7
Cfa025826 Carpinus fangiana HOM05D005534 ORTHO05D006642 2.4e-34 151.4 387 31.0
Cpa.g.sc438.5 Carica papaya HOM05D005534 ORTHO05D006642 4.1e-34 150.6 311 35.4
CANSAT25G1380 Cannabis sativa HOM05D005534 ORTHO05D006642 1.3e-32 145.6 165 49.7
SEGI_21404 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.7e-32 145.2 126 57.1
Hma1.2p1_0708F.1_g207130 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 1.1e-31 142.5 125 58.4
Zm00001eb320410 Zea mays HOM05D005534 ORTHO05D006642 8.9e-29 132.9 143 50.3
CSS0033231 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 9.2e-26 122.9 131 55.0
CANSAT25G1946 Cannabis sativa HOM05D005534 ORTHO05D006642 1.2e-25 122.5 148 44.6
Os12g0203100 Oryza sativa ssp. japonica HOM05D005534 ORTHO05D006642 6.0e-25 120.2 149 46.3
TPR.G30718 Trifolium pratense HOM05D005534 ORTHO05D006642 6.0e-25 120.2 283 31.4
CSS0018807 Camellia sinensis var. sinensis HOM05D005534 ORTHO05D006642 1.3e-24 119.0 124 53.2
Hma1.2p1_0708F.1_g207140 Hydrangea macrophylla HOM05D005534 ORTHO05D006642 5.1e-24 117.1 150 46.7
C07p20870 Brassica napus HOM05D005534 ORTHO05D006642 1.7e-19 102.1 168 39.9
BolC7t42620H Brassica oleracea HOM05D005534 ORTHO05D006642 1.7e-19 102.1 168 39.9
BcaC06g34996 Brassica carinata HOM05D005534 ORTHO05D006642 1.7e-16 92.0 156 38.5
A07p14190 Brassica napus HOM05D005534 ORTHO05D006642 1.9e-15 88.6 168 39.3
MCO12G480 Micromonas commoda HOM05D005534 ORTHO05D006642 3.3e-15 87.8 144 43.8
Lj1A297G57 Lonicera japonica HOM05D005534 ORTHO05D006642 9.0e-13 79.7 126 40.5
Glyma.04G256001 Glycine max HOM05D005534 ORTHO05D006642 1.3e-11 75.9 118 38.1
Lsat_1_v5_gn_2_74121 Lactuca sativa HOM05D000236 ORTHO05D000192 4.6e-09 67.4 42 66.7
SEGI_02632 Sequoiadendron giganteum HOM05D005534 ORTHO05D006642 1.6e-06 58.9 63 47.6


User provided reference genes

Program Settings