Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g583550 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 4.2e-119 431.8 289 100.0
Pp3c7_13570 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.5e-49 199.1 268 47.4
Pp3c2_28040 Physcomitrium patens HOM05D003590 ORTHO05D004290 7.7e-49 198.4 272 47.1
Mapoly0058s0048 Marchantia polymorpha HOM05D003590 ORTHO05D004290 6.6e-48 195.3 242 49.6
HPP92_009006 Vanilla planifolia HOM05D003590 ORTHO05D004290 6.1e-46 188.7 264 44.7
AagrBONN_evm.TU.Sc2ySwM_228.379 Anthoceros agrestis HOM05D003590 ORTHO05D004290 1.8e-45 187.2 259 46.7
CsaV3_4G002670 Cucumis sativus L. HOM05D003590 ORTHO05D004290 2.3e-45 186.8 292 43.2
PSO339G4307 Papaver somniferum HOM05D003590 ORTHO05D004290 2.3e-45 186.8 284 43.3
MELO3C017774.2 Cucumis melo HOM05D003590 ORTHO05D004290 5.2e-45 185.7 263 45.2
Duzib151G0409 Durio zibethinus HOM05D003590 ORTHO05D004290 8.9e-45 184.9 265 44.2
Sed0008844 Sechium edule HOM05D003590 ORTHO05D004290 8.9e-45 184.9 292 43.5
ClCG07G015120 Citrullus lanatus HOM05D003590 ORTHO05D004290 1.2e-44 184.5 263 44.9
COL.COLO4_10136 Corchorus olitorius HOM05D003590 ORTHO05D004290 1.2e-44 184.5 271 42.8
Gohir.D10G124700 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.2e-44 184.5 295 42.4
Gorai.011G137800 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.2e-44 184.5 295 42.4
PSO384G2196 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-44 184.5 284 42.6
Gohir.A10G141800 Gossypium hirsutum HOM05D003590 ORTHO05D004290 1.5e-44 184.1 295 42.4
Thecc.04G169500 Theobroma cacao HOM05D003590 ORTHO05D004290 2.6e-44 183.3 271 42.4
SalBow6G6444 Salvia bowleyana HOM05D003590 ORTHO05D004290 3.4e-44 183.0 258 45.0
Cc09_g03870 Coffea canephora HOM05D003590 ORTHO05D004290 4.4e-44 182.6 263 43.7
Sed0014148 Sechium edule HOM05D003590 ORTHO05D004290 5.7e-44 182.2 294 41.8
Atru.chr4.1363 Acer truncatum HOM05D003590 ORTHO05D004290 9.8e-44 181.4 295 43.1
Glyma.18G243700 Glycine max HOM05D003590 ORTHO05D004290 9.8e-44 181.4 264 43.9
RcHm_v2.0_Chr6g0285711 Rosa chinensis HOM05D003590 ORTHO05D004290 9.8e-44 181.4 271 41.7
MSTRG.8205 Avicennia marina HOM05D003590 ORTHO05D004290 1.3e-43 181.0 264 43.6
MBI07_g22611_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.3e-43 181.0 264 44.3
Ca_20810_v3 Cicer arietinum L. HOM05D003590 ORTHO05D004290 1.7e-43 180.6 276 43.5
Duzib268G1650 Durio zibethinus HOM05D003590 ORTHO05D004290 1.7e-43 180.6 271 42.4
HanXRQChr05g0149811 Helianthus annuus HOM05D003590 ORTHO05D004290 1.7e-43 180.6 277 41.5
Nitab4.5_0004390g0060 Nicotiana tabacum HOM05D003590 ORTHO05D004290 1.7e-43 180.6 265 43.8
arahy.Tifrunner.gnm1.ann1.SY3MF3 Arachis hypogaea HOM05D003590 ORTHO05D004290 2.2e-43 180.3 266 44.4
arahy.Tifrunner.gnm1.ann1.YL8857 Arachis hypogaea HOM05D003590 ORTHO05D004290 2.8e-43 179.9 266 44.4
CiPaw.01G172800 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.8e-43 179.9 288 41.7
CDE08G0825 Ceratophyllum demersum HOM05D003590 ORTHO05D004290 2.8e-43 179.9 266 43.6
DCAR_023942 Daucus carota HOM05D003590 ORTHO05D004290 2.8e-43 179.9 279 42.7
Phvul.008G052900 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 3.7e-43 179.5 264 42.8
Prupe.1G203200 Prunus persica HOM05D003590 ORTHO05D004290 3.7e-43 179.5 271 42.4
Cfa015230 Carpinus fangiana HOM05D003590 ORTHO05D004290 4.9e-43 179.1 288 41.7
Glyma.11G124800 Glycine max HOM05D003590 ORTHO05D004290 4.9e-43 179.1 278 44.2
CAN.G1177.3 Capsicum annuum HOM05D003590 ORTHO05D004290 6.3e-43 178.7 265 43.8
Dinv15385 Davidia involucrata HOM05D003590 ORTHO05D004290 6.3e-43 178.7 266 42.9
HanXRQChr16g0500391 Helianthus annuus HOM05D003590 ORTHO05D004290 6.3e-43 178.7 278 41.7
SMO115G0200 Selaginella moellendorffii HOM05D003590 ORTHO05D004290 6.3e-43 178.7 256 44.9
SEGI_22814 Sequoiadendron giganteum HOM05D003590 ORTHO05D004290 6.3e-43 178.7 276 42.0
Glyma.12G049400 Glycine max HOM05D003590 ORTHO05D004290 8.3e-43 178.3 269 44.2
Gohir.D02G109000 Gossypium hirsutum HOM05D003590 ORTHO05D004290 8.3e-43 178.3 262 42.4
Lj3g0023284 Lotus japonicus HOM05D003590 ORTHO05D004290 8.3e-43 178.3 296 41.6
Manes.11G128000 Manihot esculenta HOM05D003590 ORTHO05D004290 8.3e-43 178.3 266 42.5
Medtr4g068210 Medicago truncatula HOM05D003590 ORTHO05D004290 8.3e-43 178.3 277 43.3
Aa31LG2G2380 Aethionema arabicum HOM05D003590 ORTHO05D004290 1.1e-42 177.9 258 42.6
CANSAT64G0301 Cannabis sativa HOM05D003590 ORTHO05D004290 1.1e-42 177.9 266 42.5
FvH4_2g19990 Fragaria vesca HOM05D003590 ORTHO05D004290 1.1e-42 177.9 271 41.3
Gorai.005G124600 Gossypium raimondii HOM05D003590 ORTHO05D004290 1.1e-42 177.9 262 42.4
VMungo1383G1305 Vigna mungo HOM05D003590 ORTHO05D004290 1.1e-42 177.9 272 42.6
Lsat_1_v5_gn_8_26121 Lactuca sativa HOM05D003590 ORTHO05D004290 1.4e-42 177.6 241 44.4
MBI17_g21475_MAGBIO Magnolia biondii HOM05D003590 ORTHO05D004290 1.4e-42 177.6 264 42.4
GSVIVG01019065001 Vitis vinifera HOM05D003590 ORTHO05D004290 1.4e-42 177.6 264 43.6
Eucgr.A00018 Eucalyptus grandis HOM05D003590 ORTHO05D004290 1.8e-42 177.2 269 42.4
Phvul.008G099200 Phaseolus vulgaris HOM05D003590 ORTHO05D004290 1.8e-42 177.2 278 42.4
CSS0039108 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 2.4e-42 176.8 264 42.8
CiPaw.02G102900 Carya illinoinensis HOM05D003590 ORTHO05D004290 2.4e-42 176.8 284 41.5
Gohir.A02G091600 Gossypium hirsutum HOM05D003590 ORTHO05D004290 2.4e-42 176.8 294 40.1
Oeu064494.2 Olea europaea HOM05D003590 ORTHO05D004290 2.4e-42 176.8 266 43.2
Peaxi162Scf00074g01833 Petunia axillaris HOM05D003590 ORTHO05D004290 2.4e-42 176.8 257 43.6
RcHm_v2.0_Chr2g0122441 Rosa chinensis HOM05D003590 ORTHO05D004290 2.4e-42 176.8 270 41.5
Sc06g0005010 Simmondsia chinensis HOM05D003590 ORTHO05D004290 2.4e-42 176.8 265 43.0
Ciclev10021047m.g Citrus clementina HOM05D003590 ORTHO05D004290 4.1e-42 176.0 271 42.4
Manes.04G049785 Manihot esculenta HOM05D003590 ORTHO05D004290 4.1e-42 176.0 268 41.8
TWI36G1101 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 4.1e-42 176.0 265 41.9
THA.LOC104805702 Tarenaya hassleriana HOM05D003590 ORTHO05D004290 5.4e-42 175.6 257 44.0
TPR.G34214 Trifolium pratense HOM05D003590 ORTHO05D004290 5.4e-42 175.6 280 43.6
CANSAT54G1837 Cannabis sativa HOM05D003590 ORTHO05D004290 7.0e-42 175.3 259 42.1
Nn7g37627 Nelumbo nucifera HOM05D003590 ORTHO05D004290 7.0e-42 175.3 266 42.1
Os01g0895100 Oryza sativa ssp. japonica HOM05D003590 ORTHO05D004290 7.0e-42 175.3 296 41.6
PGSC0003DMG400016231 Solanum tuberosum HOM05D003590 ORTHO05D004290 7.0e-42 175.3 265 42.3
Migut.F01864 Erythranthe guttata HOM05D003590 ORTHO05D004290 1.2e-41 174.5 220 47.7
PRCOL_00001168 Prasinoderma coloniale HOM05D003590 ORTHO05D004290 1.2e-41 174.5 255 45.1
ATR0743G202 Amborella trichopoda HOM05D003590 ORTHO05D004290 1.6e-41 174.1 264 42.4
CARHR056900 Cardamine hirsuta HOM05D003590 ORTHO05D004290 1.6e-41 174.1 258 42.2
AL2G20260 Arabidopsis lyrata HOM05D003590 ORTHO05D004290 2.0e-41 173.7 258 42.2
AT1G65260 Arabidopsis thaliana HOM05D003590 ORTHO05D004290 2.0e-41 173.7 258 42.2
CBR_g79424 Chara braunii HOM05D003590 ORTHO05D004290 2.0e-41 173.7 265 43.8
Carub.0006s2551 Capsella rubella HOM05D003590 ORTHO05D004290 2.7e-41 173.3 258 41.9
Dinv29086 Davidia involucrata HOM05D003590 ORTHO05D004290 2.7e-41 173.3 260 42.7
QL10p052769 Quercus lobata HOM05D003590 ORTHO05D004290 2.7e-41 173.3 178 55.6
Solyc11g008990.2 Solanum lycopersicum HOM05D003590 ORTHO05D004290 2.7e-41 173.3 265 41.5
Sopen11g004770 Solanum pennellii HOM05D003590 ORTHO05D004290 2.7e-41 173.3 265 41.5
Psat7g208480 Pisum sativum HOM05D003590 ORTHO05D004290 3.5e-41 172.9 230 45.2
unitig_52.g17513 Utricularia gibba HOM05D003590 ORTHO05D004290 3.5e-41 172.9 267 41.6
Zm00001eb144840 Zea mays HOM05D003590 ORTHO05D004290 3.5e-41 172.9 297 41.4
Lalb_Chr19g0138461 Lupinus albus HOM05D003590 ORTHO05D004290 4.5e-41 172.6 265 43.0
Lj1A579G41 Lonicera japonica HOM05D003590 ORTHO05D004290 5.9e-41 172.2 161 55.9
MD00G1019200 Malus domestica HOM05D003590 ORTHO05D004290 5.9e-41 172.2 271 42.1
Sp5g19930 Schrenkiella parvula HOM05D003590 ORTHO05D004290 5.9e-41 172.2 258 41.9
GSVIVG01038103001 Vitis vinifera HOM05D003590 ORTHO05D004290 5.9e-41 172.2 260 42.3
BcaB05g24099 Brassica carinata HOM05D003590 ORTHO05D004290 7.8e-41 171.8 258 41.9
Eucgr.B01427 Eucalyptus grandis HOM05D003590 ORTHO05D004290 7.8e-41 171.8 257 42.8
A02p13120 Brassica napus HOM05D003590 ORTHO05D004290 1.0e-40 171.4 257 42.0
BraA02t06368Z Brassica rapa HOM05D003590 ORTHO05D004290 1.0e-40 171.4 257 42.0
Dinv33190 Davidia involucrata HOM05D003590 ORTHO05D004290 1.0e-40 171.4 271 42.1
Potri.016G099400 Populus trichocarpa HOM05D003590 ORTHO05D004290 1.0e-40 171.4 280 40.0
C02p21260 Brassica napus HOM05D003590 ORTHO05D004290 1.3e-40 171.0 258 41.9
BcaC03g14688 Brassica carinata HOM05D003590 ORTHO05D004290 1.7e-40 170.6 256 42.2
Haze_01407 Corylus avellana HOM05D003590 ORTHO05D004290 1.7e-40 170.6 155 58.7
TAR362G0082 Trochodendron aralioides HOM05D003590 ORTHO05D004290 1.7e-40 170.6 263 43.0
BolC2t08266H Brassica oleracea HOM05D003590 ORTHO05D004290 2.3e-40 170.2 258 41.9
Duzib212G0521 Durio zibethinus HOM05D003590 ORTHO05D004290 2.3e-40 170.2 271 41.0
Lalb_Chr07g0192831 Lupinus albus HOM05D003590 ORTHO05D004290 2.9e-40 169.9 272 40.8
Zm00001eb365760 Zea mays HOM05D003590 ORTHO05D004290 2.9e-40 169.9 297 40.7
Potri.006G123600 Populus trichocarpa HOM05D003590 ORTHO05D004290 3.9e-40 169.5 276 39.9
Ah.06g195400 Amaranthus hybridus HOM05D003590 ORTHO05D004290 5.0e-40 169.1 222 45.0
Eucgr.K00001 Eucalyptus grandis HOM05D003590 ORTHO05D004290 5.0e-40 169.1 301 39.5
Lj3A152T20 Lonicera japonica HOM05D003590 ORTHO05D004290 5.0e-40 169.1 256 41.0
SGA_v2.0_scaffold62G21494 Striga asiatica HOM05D004200 ORTHO05D004996 5.0e-40 169.1 284 41.2
Oeu010166.1 Olea europaea HOM05D003590 ORTHO05D004290 6.6e-40 168.7 155 56.8
PGR042G3827 Punica granatum HOM05D003590 ORTHO05D004290 8.6e-40 168.3 287 40.8
PGR119G1440 Punica granatum HOM05D003590 ORTHO05D004290 8.6e-40 168.3 257 41.2
Thhalv10018833m.g Eutrema salsugineum HOM05D003590 ORTHO05D004290 1.1e-39 167.9 258 41.1
FAN26G3423 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.1e-39 167.9 283 40.3
vmacro00650 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.1e-39 167.9 269 40.9
vmacro00679 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.1e-39 167.9 269 40.9
Lj1g0027383 Lotus japonicus HOM05D003590 ORTHO05D004290 1.5e-39 167.5 258 40.7
Aqoxy2G04149 Aquilegia oxysepala HOM05D003590 ORTHO05D004290 3.3e-39 166.4 264 41.3
DCAR_002151 Daucus carota HOM05D003590 ORTHO05D004290 3.3e-39 166.4 265 42.3
Sabra06G0097800 Salix brachista HOM05D003590 ORTHO05D004290 3.3e-39 166.4 162 55.6
CSS0008581 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 4.3e-39 166.0 161 54.0
MD17G1177400 Malus domestica HOM05D003590 ORTHO05D004290 4.3e-39 166.0 231 44.2
Actinidia27105 Actinidia chinensis HOM05D003590 ORTHO05D004290 1.6e-38 164.1 269 40.9
FAN27G0950 Fragaria x ananassa HOM05D003590 ORTHO05D004290 1.6e-38 164.1 300 37.7
CSS0013807 Camellia sinensis var. sinensis HOM05D003590 ORTHO05D004290 8.0e-38 161.8 161 53.4
EL10Ac4g10000 Beta vulgaris HOM05D003590 ORTHO05D004290 1.4e-37 161.0 157 54.1
AUR62006641 Chenopodium quinoa HOM05D003590 ORTHO05D004290 1.4e-37 161.0 271 39.1
Cre11.g468050 Chlamydomonas reinhardtii HOM05D003590 ORTHO05D004290 2.3e-37 160.2 156 58.3
FAN15G3511 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.3e-37 160.2 309 36.6
Hund07359 Selenicereus undatus HOM05D003590 ORTHO05D004290 3.1e-37 159.8 305 39.0
Sabra16G0098800 Salix brachista HOM05D003590 ORTHO05D004290 5.2e-37 159.1 170 52.4
Nitab4.5_0009796g0040 Nicotiana tabacum HOM05D003590 ORTHO05D004290 6.8e-37 158.7 237 43.0
Rhsim09G0012200 Rhododendron simsii HOM05D003590 ORTHO05D004290 6.8e-37 158.7 166 51.8
FAN24G1875 Fragaria x ananassa HOM05D003590 ORTHO05D004290 8.9e-37 158.3 311 36.0
Hund21913 Selenicereus undatus HOM05D003590 ORTHO05D004290 8.9e-37 158.3 265 40.4
Actinidia03270 Actinidia chinensis HOM05D003590 ORTHO05D004290 3.4e-36 156.4 263 41.1
Nn1g09673 Nelumbo nucifera HOM05D003590 ORTHO05D004290 4.9e-35 152.5 295 37.6
Lsat_1_v5_gn_9_37260 Lactuca sativa HOM05D003590 ORTHO05D004290 3.2e-34 149.8 279 36.9
Pp3c10_14840 Physcomitrium patens HOM05D003590 ORTHO05D004290 4.1e-34 149.4 238 39.1
FvH4_6g53380 Fragaria vesca HOM05D003590 ORTHO05D004290 5.4e-34 149.1 166 48.2
PSO782G1591 Papaver somniferum HOM05D003590 ORTHO05D004290 1.2e-33 147.9 184 45.7
Rhsim05G0167200 Rhododendron simsii HOM05D003590 ORTHO05D004290 4.6e-33 146.0 313 36.4
SGA_v2.0_scaffold122G33190 Striga asiatica HOM05D003590 ORTHO05D004290 4.6e-33 146.0 315 35.6
ECA246G2345 Erigeron canadensis HOM05D003590 ORTHO05D004290 3.9e-32 142.9 226 40.7
Cpa.g.sc9.339 Carica papaya HOM05D003590 ORTHO05D004290 1.9e-31 140.6 265 38.5
FvH4_3g16870 Fragaria vesca HOM05D003590 ORTHO05D004290 2.5e-31 140.2 268 37.3
RcHm_v2.0_Chr5g0028111 Rosa chinensis HOM05D003590 ORTHO05D004290 4.3e-31 139.4 270 37.4
PSO478G1249 Papaver somniferum HOM05D003590 ORTHO05D004290 4.7e-30 136.0 302 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2375 Anthoceros agrestis HOM05D003590 ORTHO05D004290 2.3e-29 133.7 190 41.6
MCO10G215 Micromonas commoda HOM05D003590 ORTHO05D004290 6.4e-27 125.6 253 36.0
vmacro19566 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 1.7e-24 117.5 99 60.6
Lsat_1_v5_gn_1_99340 Lactuca sativa HOM05D003590 ORTHO05D004290 1.2e-22 111.3 107 53.3
SHI32795 Sapria himalayana HOM05D003590 ORTHO05D004290 1.2e-22 111.3 247 35.2
Hma1.2p1_0831F.1_g225440 Hydrangea macrophylla HOM05D003590 ORTHO05D004290 3.6e-22 109.8 103 58.3
FAN19G0667 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.3e-21 107.1 103 53.4
MD15G1434500 Malus domestica HOM05D003590 ORTHO05D004290 6.8e-21 105.5 92 57.6
Cpa.g.sc123.34 Carica papaya HOM05D003590 ORTHO05D004290 1.5e-20 104.4 109 52.3
FAN11G2382 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.6e-20 103.6 228 35.5
ECA246G3922 Erigeron canadensis HOM05D003590 ORTHO05D004290 6.4e-19 99.0 136 43.4
CBR_g16972 Chara braunii HOM05D003590 ORTHO05D004290 9.2e-18 95.1 151 36.4
Lj4g0013306 Lotus japonicus HOM05D003590 ORTHO05D004290 1.2e-17 94.7 94 50.0
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 4.3e-15 86.3 142 40.8
QL11p022255 Quercus lobata HOM05D003590 ORTHO05D004290 2.1e-14 84.0 70 62.9
Ca_29066_v3 Cicer arietinum L. HOM05D003590 ORTHO05D147848 1.8e-13 80.9 154 31.8
TWI36G0235 Tripterygium wilfordii HOM05D003590 ORTHO05D004290 1.2e-09 68.2 157 34.4
Dinv15392 Davidia involucrata HOM05D003590 ORTHO05D004290 2.7e-09 67.0 168 32.7
vmacro19565 Vaccinium macrocarpon HOM05D003590 ORTHO05D004290 4.6e-09 66.2 164 32.9
FAN16G0742 Fragaria x ananassa HOM05D003590 ORTHO05D004290 2.3e-08 63.9 228 29.4


User provided reference genes

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