Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g577550 Chlamydomonas reinhardtii HOM05D006922 ORTHO05D008564 7.2e-238 827.4 615 100.0
SMO200G0225 Selaginella moellendorffii HOM05D006922 ORTHO05D008564 7.4e-65 252.7 471 34.4
CBR_g22343 Chara braunii HOM05D006922 ORTHO05D008564 2.2e-61 241.1 455 35.4
VMungo0647G1020 Vigna mungo HOM05D006922 ORTHO05D008564 4.9e-61 240.0 476 32.6
CsaV3_6G016240 Cucumis sativus L. HOM05D006922 ORTHO05D008564 1.2e-59 235.3 475 33.5
Cfa011691 Carpinus fangiana HOM05D006922 ORTHO05D008564 2.7e-59 234.2 471 33.1
Pp3c8_16660 Physcomitrium patens HOM05D006922 ORTHO05D008564 3.5e-59 233.8 467 33.6
ClCG02G019570 Citrullus lanatus HOM05D006922 ORTHO05D008564 6.0e-59 233.0 459 33.3
Sed0026257 Sechium edule HOM05D006922 ORTHO05D008564 7.9e-59 232.6 468 33.1
Gohir.D13G229600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 1.3e-58 231.9 473 33.0
CiPaw.13G078100 Carya illinoinensis HOM05D006922 ORTHO05D008564 1.8e-58 231.5 477 32.9
Hund18850 Selenicereus undatus HOM05D006922 ORTHO05D008564 1.8e-58 231.5 465 34.2
Actinidia25162 Actinidia chinensis HOM05D006922 ORTHO05D008564 2.3e-58 231.1 446 33.6
Gorai.013G260300 Gossypium raimondii HOM05D006922 ORTHO05D008564 2.3e-58 231.1 472 33.1
Duzib170G0653 Durio zibethinus HOM05D006922 ORTHO05D008564 3.9e-58 230.3 454 33.3
Gohir.A13G224600 Gossypium hirsutum HOM05D006922 ORTHO05D008564 3.9e-58 230.3 472 33.1
TAR636G2664 Trochodendron aralioides HOM05D006922 ORTHO05D008564 3.9e-58 230.3 460 32.4
GSVIVG01024745001 Vitis vinifera HOM05D006922 ORTHO05D008564 3.9e-58 230.3 458 32.8
Rhsim13G0069900 Rhododendron simsii HOM05D006922 ORTHO05D008564 8.7e-58 229.2 458 32.8
unitig_0.g440 Utricularia gibba HOM05D006922 ORTHO05D008564 8.7e-58 229.2 459 32.5
CANSAT54G2041 Cannabis sativa HOM05D006922 ORTHO05D008564 1.1e-57 228.8 472 32.6
Ah.08g221140 Amaranthus hybridus HOM05D006922 ORTHO05D008564 2.5e-57 227.6 461 33.6
vmacro02966 Vaccinium macrocarpon HOM05D006922 ORTHO05D008564 2.5e-57 227.6 458 32.8
TWI75G0327 Tripterygium wilfordii HOM05D006922 ORTHO05D008564 3.3e-57 227.3 475 32.4
CSS0043924 Camellia sinensis var. sinensis HOM05D006922 ORTHO05D008564 7.4e-57 226.1 458 32.5
Nn2g13696 Nelumbo nucifera HOM05D006922 ORTHO05D008564 7.4e-57 226.1 439 33.5
AagrBONN_evm.TU.Sc2ySwM_344.796 Anthoceros agrestis HOM05D006922 ORTHO05D008564 1.3e-56 225.3 464 32.5
Thecc.09G302300 Theobroma cacao HOM05D006922 ORTHO05D008564 1.6e-56 224.9 458 32.8
ATR0618G165 Amborella trichopoda HOM05D006922 ORTHO05D008564 2.1e-56 224.6 468 32.3
Os01g0141700 Oryza sativa ssp. japonica HOM05D006922 ORTHO05D008564 2.1e-56 224.6 481 32.4
Atru.chr3.4225 Acer truncatum HOM05D006922 ORTHO05D008564 4.8e-56 223.4 460 32.8
Cc01_g14160 Coffea canephora HOM05D006922 ORTHO05D008564 4.8e-56 223.4 456 32.0
Lsat_1_v5_gn_5_171361 Lactuca sativa HOM05D006922 ORTHO05D008564 4.8e-56 223.4 475 31.6
QL01p038111 Quercus lobata HOM05D006922 ORTHO05D008564 6.2e-56 223.0 469 32.4
HanXRQChr01g0011191 Helianthus annuus HOM05D006922 ORTHO05D008564 1.4e-55 221.9 476 31.1
ECA248G0600 Erigeron canadensis HOM05D006922 ORTHO05D008564 1.8e-55 221.5 459 32.7
Aqoxy4G02590 Aquilegia oxysepala HOM05D006922 ORTHO05D008564 3.1e-55 220.7 458 31.2
AUR62001652 Chenopodium quinoa HOM05D006922 ORTHO05D008564 5.3e-55 219.9 447 33.1
Sp6g20450 Schrenkiella parvula HOM05D006922 ORTHO05D008564 5.3e-55 219.9 453 32.5
Medtr5g070310 Medicago truncatula HOM05D006922 ORTHO05D008564 6.9e-55 219.5 460 31.3
Cpa.g.sc112.28 Carica papaya HOM05D006922 ORTHO05D008564 1.2e-54 218.8 464 32.1
AUR62020125 Chenopodium quinoa HOM05D006922 ORTHO05D008564 1.5e-54 218.4 437 34.1
CDE04G0365 Ceratophyllum demersum HOM05D006922 ORTHO05D008564 2.0e-54 218.0 464 31.5
HPP92_019886 Vanilla planifolia HOM05D006922 ORTHO05D008564 3.4e-54 217.2 458 31.9
Nitab4.5_0006472g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 5.8e-54 216.5 449 32.3
Haze_24310 Corylus avellana HOM05D006922 ORTHO05D008564 7.6e-54 216.1 540 29.6
Haze_24317 Corylus avellana HOM05D006922 ORTHO05D008564 7.6e-54 216.1 540 29.6
Sopen09g014130 Solanum pennellii HOM05D006922 ORTHO05D008564 1.0e-53 215.7 464 32.1
Glyma.02G226300 Glycine max HOM05D006922 ORTHO05D008564 1.3e-53 215.3 489 31.7
Solyc09g031610.4 Solanum lycopersicum HOM05D006922 ORTHO05D008564 1.3e-53 215.3 447 32.7
THA.LOC104814912 Tarenaya hassleriana HOM05D006922 ORTHO05D008564 1.3e-53 215.3 451 32.6
Phvul.008G261700 Phaseolus vulgaris HOM05D006922 ORTHO05D008564 2.9e-53 214.2 480 30.6
MSTRG.17876 Avicennia marina HOM05D006922 ORTHO05D008564 3.8e-53 213.8 448 33.5
SGA_v2.0_scaffold146G36139 Striga asiatica HOM05D006922 ORTHO05D008564 3.8e-53 213.8 446 32.7
PSO339G4985 Papaver somniferum HOM05D006922 ORTHO05D008564 4.9e-53 213.4 458 32.1
SHI19141 Sapria himalayana HOM05D006922 ORTHO05D008564 4.9e-53 213.4 444 31.8
Lalb_Chr17g0345061 Lupinus albus HOM05D006922 ORTHO05D008564 6.5e-53 213.0 486 30.5
Sabra16G0152600 Salix brachista HOM05D006922 ORTHO05D008564 6.5e-53 213.0 460 32.2
Glyma.14G193200 Glycine max HOM05D006922 ORTHO05D008564 8.4e-53 212.6 480 31.0
RcHm_v2.0_Chr5g0069361 Rosa chinensis HOM05D006922 ORTHO05D008564 2.5e-52 211.1 472 32.2
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 3.2e-52 210.7 455 32.1
PSO384G3055 Papaver somniferum HOM05D006922 ORTHO05D008564 5.5e-52 209.9 458 31.2
Sc12g0000700 Simmondsia chinensis HOM05D006922 ORTHO05D008564 5.5e-52 209.9 449 32.3
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 1.6e-51 208.4 474 31.0
Potri.001G251000 Populus trichocarpa HOM05D006922 ORTHO05D008564 1.6e-51 208.4 477 31.2
Eucgr.B02258 Eucalyptus grandis HOM05D006922 ORTHO05D008564 2.1e-51 208.0 489 32.1
Psat2g058840 Pisum sativum HOM05D006922 ORTHO05D008564 2.7e-51 207.6 479 31.5
Carub.0008s1938 Capsella rubella HOM05D006922 ORTHO05D008564 3.5e-51 207.2 463 30.2
DCAR_007371 Daucus carota HOM05D006922 ORTHO05D008564 3.5e-51 207.2 456 32.0
Migut.N00796 Erythranthe guttata HOM05D006922 ORTHO05D008564 3.5e-51 207.2 463 31.5
FvH4_3g38500 Fragaria vesca HOM05D006922 ORTHO05D008564 6.0e-51 206.5 456 32.5
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 7.9e-51 206.1 455 33.8
arahy.Tifrunner.gnm1.ann1.GN6H4S Arachis hypogaea HOM05D006922 ORTHO05D008564 1.0e-50 205.7 461 30.4
arahy.Tifrunner.gnm1.ann1.TP1S59 Arachis hypogaea HOM05D006922 ORTHO05D008564 1.0e-50 205.7 461 30.4
Oeu056142.1 Olea europaea HOM05D006922 ORTHO05D008564 3.0e-50 204.1 439 32.3
Manes.02G119900 Manihot esculenta HOM05D006922 ORTHO05D008564 5.1e-50 203.4 461 31.5
PGR102G2313 Punica granatum HOM05D006922 ORTHO05D008564 1.1e-49 202.2 482 30.3
TPR.G5774 Trifolium pratense HOM05D006922 ORTHO05D008564 1.1e-49 202.2 460 31.1
MD11G1075200 Malus domestica HOM05D006922 ORTHO05D008564 1.5e-49 201.8 485 31.3
AT5G58760 Arabidopsis thaliana HOM05D006922 ORTHO05D008564 2.5e-49 201.1 468 33.1
FAN21G2294 Fragaria x ananassa HOM05D006922 ORTHO05D008564 2.5e-49 201.1 449 31.2
AL8G35040 Arabidopsis lyrata HOM05D006922 ORTHO05D008564 7.4e-49 199.5 460 31.1
EL10Ac7g16162 Beta vulgaris HOM05D006922 ORTHO05D008564 1.6e-48 198.4 302 36.8
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 6.3e-48 196.4 451 33.7
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 6.3e-48 196.4 455 32.7
VMungo1080G0717 Vigna mungo HOM05D006922 ORTHO05D008564 6.3e-48 196.4 305 35.7
CARHR272670 Cardamine hirsuta HOM05D006922 ORTHO05D008564 1.1e-47 195.7 453 32.9
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 2.4e-47 194.5 450 34.0
Dinv14441 Davidia involucrata HOM05D006922 ORTHO05D008564 5.3e-47 193.4 452 31.0
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 6.9e-47 193.0 441 33.8
BraA02t05832Z Brassica rapa HOM05D006922 ORTHO05D008564 6.9e-47 193.0 451 33.7
FAN25G0993 Fragaria x ananassa HOM05D006922 ORTHO05D008564 9.0e-47 192.6 492 30.5
FAN11G1737 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.2e-46 192.2 299 36.1
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 1.5e-46 191.8 152 58.6
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 1.5e-46 191.8 152 58.6
FAN16G0983 Fragaria x ananassa HOM05D006922 ORTHO05D008564 1.5e-46 191.8 290 37.2
MELO3C025853.2 Cucumis melo HOM05D006922 ORTHO05D008564 2.0e-46 191.4 433 31.2
Nitab4.5_0021689g0010 Nicotiana tabacum HOM05D006922 ORTHO05D008564 2.7e-43 181.0 538 27.5
Ca_05595_v3 Cicer arietinum L. HOM05D006922 ORTHO05D008564 1.4e-39 168.7 439 28.2
Zm00001eb335650 Zea mays HOM05D006922 ORTHO05D008564 1.5e-38 165.2 480 26.9
Peaxi162Scf00116g00214 Petunia axillaris HOM05D006922 ORTHO05D008564 2.0e-38 164.9 465 29.0
LjContig00155g0013001 Lotus japonicus HOM05D006922 ORTHO05D008564 3.2e-36 157.5 474 25.9
HPP92_019877 Vanilla planifolia HOM05D006922 ORTHO05D008564 5.7e-33 146.7 115 58.3
Prupe.6G058000 Prunus persica HOM05D006922 ORTHO05D008564 5.5e-20 103.6 431 24.6
COL.COLO4_19151 Corchorus olitorius HOM05D006922 ORTHO05D008564 9.4e-20 102.8 105 45.7
Zm00001eb098530 Zea mays HOM05D008428 ORTHO05D010743 3.0e-18 97.8 129 38.8
Zm00001eb204440 Zea mays HOM05D008428 ORTHO05D010743 6.8e-18 96.7 129 38.0
PGSC0003DMG400022078 Solanum tuberosum HOM05D006922 ORTHO05D008564 3.4e-17 94.4 74 54.1
Zm00001eb302770 Zea mays HOM05D008428 ORTHO05D010743 3.4e-17 94.4 129 37.2
Actinidia23246 Actinidia chinensis HOM05D006922 ORTHO05D008564 6.3e-16 90.1 69 59.4
CAN.G3.37 Capsicum annuum HOM05D006922 ORTHO05D008564 8.3e-16 89.7 84 47.6
Actinidia16091 Actinidia chinensis HOM05D006922 ORTHO05D008564 5.9e-14 83.6 58 62.1
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 4.1e-07 60.8 142 26.8


User provided reference genes

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