Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 5.4e-201 704.9 613 100.0
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 3.7e-16 90.9 158 39.9
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 4.5e-14 84.0 162 38.3
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 4.5e-14 84.0 143 39.9
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 4.5e-14 84.0 128 43.0
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 5.9e-14 83.6 142 38.7
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 7.7e-14 83.2 168 35.7
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 2.9e-13 81.3 124 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 5.0e-13 80.5 135 39.3
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 5.0e-13 80.5 142 38.0
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 6.5e-13 80.1 134 38.1
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 6.5e-13 80.1 148 37.8
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 8.5e-13 79.7 109 44.0
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 1.1e-12 79.3 132 40.2
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 1.1e-12 79.3 124 37.1
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 1.5e-12 79.0 109 43.1
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.5e-12 79.0 147 35.4
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.9e-12 78.6 112 41.1
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 1.9e-12 78.6 148 37.8
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 2.5e-12 78.2 127 38.6
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.5e-12 78.2 112 40.2
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 3.2e-12 77.8 124 37.1
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 4.2e-12 77.4 124 37.9
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.5e-12 77.0 112 39.3
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 5.5e-12 77.0 112 39.3
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 5.5e-12 77.0 118 39.0
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 5.5e-12 77.0 155 36.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 7.2e-12 76.6 131 36.6
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 7.2e-12 76.6 105 44.8
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 7.2e-12 76.6 156 32.7
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 9.4e-12 76.3 107 42.1
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 9.4e-12 76.3 124 37.9
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 9.4e-12 76.3 111 40.5
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.2e-11 75.9 139 34.5
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.2e-11 75.9 134 37.3
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.2e-11 75.9 164 36.6
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 1.6e-11 75.5 112 39.3
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.6e-11 75.5 122 37.7
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 1.6e-11 75.5 122 37.7
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 1.6e-11 75.5 156 33.3
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.6e-11 75.5 122 38.5
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 2.1e-11 75.1 148 36.5
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 2.1e-11 75.1 151 35.1
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.7e-11 74.7 125 38.4
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.7e-11 74.7 125 37.6
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.7e-11 74.7 125 37.6
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 3.6e-11 74.3 109 41.3
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 3.6e-11 74.3 103 40.8
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 3.6e-11 74.3 150 36.7
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.7e-11 73.9 99 43.4
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 4.7e-11 73.9 99 43.4
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 4.7e-11 73.9 140 39.3
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 6.1e-11 73.6 142 37.3
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 6.1e-11 73.6 105 42.9
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 6.1e-11 73.6 105 41.9
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 6.1e-11 73.6 131 36.6
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.0e-11 73.2 127 36.2
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 1.0e-10 72.8 142 35.9
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.4e-10 72.4 105 40.0
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 1.4e-10 72.4 121 38.0
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.4e-10 72.4 109 42.2
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.4e-10 72.4 109 41.3
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 1.4e-10 72.4 157 35.7
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 1.8e-10 72.0 134 35.1
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 2.3e-10 71.6 105 39.0
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 3.0e-10 71.2 109 42.2
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 3.0e-10 71.2 146 37.7
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 4.0e-10 70.9 105 43.8
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 4.0e-10 70.9 97 43.3
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 5.2e-10 70.5 151 35.8
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 6.7e-10 70.1 106 42.5
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 6.7e-10 70.1 118 37.3
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 8.8e-10 69.7 141 34.8
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 8.8e-10 69.7 151 35.1
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 1.2e-09 69.3 127 34.6
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 1.2e-09 69.3 144 34.0
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 1.2e-09 69.3 130 35.4
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 1.2e-09 69.3 115 35.7
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 1.5e-09 68.9 116 36.2
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 2.6e-09 68.2 126 34.9
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 3.3e-09 67.8 152 30.3
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 3.3e-09 67.8 154 33.1
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 4.4e-09 67.4 138 36.2
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.4e-09 67.4 130 36.2
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 5.7e-09 67.0 101 42.6
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 7.5e-09 66.6 118 36.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 9.7e-09 66.2 82 42.7
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 9.7e-09 66.2 89 44.9
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 1.3e-08 65.9 100 38.0
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.3e-08 65.9 115 37.4
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.7e-08 65.5 174 32.2
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 2.8e-08 64.7 78 48.7
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 3.7e-08 64.3 126 35.7
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 6.3e-08 63.5 105 40.0
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.1e-07 62.8 152 30.3
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.4e-07 62.4 142 35.2
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.4e-07 62.4 142 35.2
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 1.8e-07 62.0 120 32.5
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 2.4e-07 61.6 72 43.1
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 3.1e-07 61.2 86 37.2
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 9.1e-07 59.7 121 33.1
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 2.7e-06 58.2 97 37.1
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 4.5e-06 57.4 85 43.5
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 7.7e-06 56.6 117 34.2


User provided reference genes

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