Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g576300 Chlamydomonas reinhardtii HOM05D006537 ORTHO05D008186 4.4e-130 468.0 241 100.0
Oeu011639.1 Olea europaea HOM05D006537 ORTHO05D008186 6.9e-35 151.8 231 40.7
A03p17600 Brassica napus HOM05D006537 ORTHO05D008186 9.0e-35 151.4 231 40.7
Ciclev10021930m.g Citrus clementina HOM05D006537 ORTHO05D008186 9.0e-35 151.4 231 40.7
SEGI_14947 Sequoiadendron giganteum HOM05D006537 ORTHO05D008186 1.2e-34 151.0 229 41.5
BcaC01g05952 Brassica carinata HOM05D006537 ORTHO05D008186 2.6e-34 149.8 231 40.3
C03p20710 Brassica napus HOM05D006537 ORTHO05D008186 2.6e-34 149.8 231 40.3
BolC3t14452H Brassica oleracea HOM05D006537 ORTHO05D008186 2.6e-34 149.8 231 40.3
ClCG08G004470 Citrullus lanatus HOM05D006537 ORTHO05D008186 2.6e-34 149.8 231 40.3
CsaV3_6G003840 Cucumis sativus L. HOM05D006537 ORTHO05D008186 2.6e-34 149.8 231 39.8
Sp4g13920 Schrenkiella parvula HOM05D006537 ORTHO05D008186 3.4e-34 149.4 231 39.4
Prupe.1G190300 Prunus persica HOM05D006537 ORTHO05D008186 4.5e-34 149.1 231 39.8
AL4G26710 Arabidopsis lyrata HOM05D006537 ORTHO05D008186 5.9e-34 148.7 231 39.0
Carub.0004s1277 Capsella rubella HOM05D006537 ORTHO05D008186 5.9e-34 148.7 231 39.0
BraA03t11027Z Brassica rapa HOM05D006537 ORTHO05D008186 7.7e-34 148.3 231 39.8
Eucgr.A00271 Eucalyptus grandis HOM05D006537 ORTHO05D008186 1.0e-33 147.9 231 39.4
AT2G31440 Arabidopsis thaliana HOM05D006537 ORTHO05D008186 1.3e-33 147.5 231 39.0
MELO3C011641.2 Cucumis melo HOM05D006537 ORTHO05D008186 1.3e-33 147.5 231 39.4
Eucgr.A00074 Eucalyptus grandis HOM05D006537 ORTHO05D008186 1.7e-33 147.1 231 39.4
Actinidia35970 Actinidia chinensis HOM05D006537 ORTHO05D008186 2.2e-33 146.7 223 39.9
CARHR125090 Cardamine hirsuta HOM05D006537 ORTHO05D008186 2.2e-33 146.7 219 41.6
Thhalv10017140m.g Eutrema salsugineum HOM05D006537 ORTHO05D008186 2.2e-33 146.7 236 38.6
PSO732G0008 Papaver somniferum HOM05D006537 ORTHO05D008186 2.2e-33 146.7 231 41.6
PSO675G9308 Papaver somniferum HOM05D006537 ORTHO05D008186 2.9e-33 146.4 231 41.6
QL10p048350 Quercus lobata HOM05D006537 ORTHO05D008186 2.9e-33 146.4 231 39.0
FvH4_4g11160 Fragaria vesca HOM05D006537 ORTHO05D008186 6.5e-33 145.2 230 39.1
BcaB01g04045 Brassica carinata HOM05D006537 ORTHO05D008186 8.5e-33 144.8 231 39.4
CSS0005792 Camellia sinensis var. sinensis HOM05D006537 ORTHO05D008186 8.5e-33 144.8 231 39.4
Cc00_g09850 Coffea canephora HOM05D006537 ORTHO05D008186 8.5e-33 144.8 235 37.9
Dinv22722 Davidia involucrata HOM05D006537 ORTHO05D008186 1.4e-32 144.1 231 38.5
Rhsim09G0028500 Rhododendron simsii HOM05D006537 ORTHO05D008186 1.4e-32 144.1 243 37.9
TWI63G0033 Tripterygium wilfordii HOM05D006537 ORTHO05D008186 1.4e-32 144.1 229 39.7
Gohir.D02G016700 Gossypium hirsutum HOM05D006537 ORTHO05D008186 1.9e-32 143.7 231 38.1
MD04G1039500 Malus domestica HOM05D006537 ORTHO05D008186 1.9e-32 143.7 231 39.0
Gohir.A02G015200 Gossypium hirsutum HOM05D006537 ORTHO05D008186 2.5e-32 143.3 231 38.1
Peaxi162Scf00375g00618 Petunia axillaris HOM05D006537 ORTHO05D008186 3.2e-32 142.9 231 38.5
Thecc.04G185300 Theobroma cacao HOM05D006537 ORTHO05D008186 5.5e-32 142.1 230 38.3
Duzib268G1074 Durio zibethinus HOM05D006537 ORTHO05D008186 7.2e-32 141.7 219 40.2
Potri.007G127400 Populus trichocarpa HOM05D006537 ORTHO05D008186 7.2e-32 141.7 231 39.0
Duzib212G0958 Durio zibethinus HOM05D006537 ORTHO05D008186 1.2e-31 141.0 231 37.7
GSVIVG01010746001 Vitis vinifera HOM05D006537 ORTHO05D008186 1.2e-31 141.0 231 37.7
Gorai.005G020200 Gossypium raimondii HOM05D006537 ORTHO05D008186 2.1e-31 140.2 231 37.2
SGA_v2.0_scaffold74G24571 Striga asiatica HOM05D006537 ORTHO05D008186 2.7e-31 139.8 230 39.1
Aqoxy2G04100 Aquilegia oxysepala HOM05D006537 ORTHO05D008186 3.6e-31 139.4 231 38.5
TAR633G2589 Trochodendron aralioides HOM05D006537 ORTHO05D008186 3.6e-31 139.4 223 39.0
Atru.chr3.1537 Acer truncatum HOM05D006537 ORTHO05D008186 4.6e-31 139.0 219 40.6
HanXRQChr14g0433111 Helianthus annuus HOM05D006537 ORTHO05D008186 4.6e-31 139.0 231 37.7
Solyc06g073410.3 Solanum lycopersicum HOM05D006537 ORTHO05D008186 4.6e-31 139.0 231 37.7
Sopen06g029790 Solanum pennellii HOM05D006537 ORTHO05D008186 4.6e-31 139.0 231 37.7
PGSC0003DMG400027008 Solanum tuberosum HOM05D006537 ORTHO05D008186 4.6e-31 139.0 231 37.7
Actinidia34608 Actinidia chinensis HOM05D006537 ORTHO05D008186 6.1e-31 138.7 223 39.5
Nitab4.5_0004579g0020 Nicotiana tabacum HOM05D006537 ORTHO05D008186 6.1e-31 138.7 231 37.7
ECA238G3138 Erigeron canadensis HOM05D000961 ORTHO05D000001 7.9e-31 138.3 232 39.7
Sed0000584 Sechium edule HOM05D006537 ORTHO05D008186 7.9e-31 138.3 238 37.4
Haze_01534 Corylus avellana HOM05D006537 ORTHO05D008186 1.0e-30 137.9 231 38.1
Medtr4g067050 Medicago truncatula HOM05D006537 ORTHO05D008186 1.4e-30 137.5 231 37.2
AUR62015408 Chenopodium quinoa HOM05D006537 ORTHO05D008186 1.8e-30 137.1 231 38.5
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 3.0e-30 136.3 231 37.2
Migut.C00288 Erythranthe guttata HOM05D006537 ORTHO05D008186 3.9e-30 136.0 231 37.2
Lj3g0010197 Lotus japonicus HOM05D006537 ORTHO05D008186 3.9e-30 136.0 231 37.2
HPP92_005584 Vanilla planifolia HOM05D006537 ORTHO05D008186 3.9e-30 136.0 229 38.9
CiPaw.01G101300 Carya illinoinensis HOM05D006537 ORTHO05D008186 5.1e-30 135.6 231 37.2
AagrBONN_evm.TU.Sc2ySwM_344.2170 Anthoceros agrestis HOM05D006537 ORTHO05D008186 6.7e-30 135.2 229 40.2
arahy.Tifrunner.gnm1.ann1.RQ8JR0 Arachis hypogaea HOM05D006537 ORTHO05D008186 6.7e-30 135.2 231 36.4
arahy.Tifrunner.gnm1.ann1.W0CVEC Arachis hypogaea HOM05D006537 ORTHO05D008186 6.7e-30 135.2 231 36.4
THA.LOC104826193 Tarenaya hassleriana HOM05D006537 ORTHO05D008186 6.7e-30 135.2 231 38.1
HPP92_005589 Vanilla planifolia HOM05D006537 ORTHO05D008186 6.7e-30 135.2 229 38.9
Aa31LG5G5440 Aethionema arabicum HOM05D006537 ORTHO05D008186 8.8e-30 134.8 231 38.1
Glyma.11G128700 Glycine max HOM05D006537 ORTHO05D008186 8.8e-30 134.8 231 36.8
CDE04G1858 Ceratophyllum demersum HOM05D006537 ORTHO05D008186 1.1e-29 134.4 231 36.8
Glyma.12G053200 Glycine max HOM05D006537 ORTHO05D008186 1.1e-29 134.4 231 36.8
VMungo1127G2200 Vigna mungo HOM05D006537 ORTHO05D008186 1.5e-29 134.0 231 37.7
CANSAT78G1337 Cannabis sativa HOM05D006537 ORTHO05D008186 2.6e-29 133.3 230 39.1
Phvul.011G055200 Phaseolus vulgaris HOM05D006537 ORTHO05D008186 3.3e-29 132.9 231 36.4
Ca_20779_v3 Cicer arietinum L. HOM05D006537 ORTHO05D008186 1.3e-28 131.0 231 35.9
RcHm_v2.0_Chr4g0407291 Rosa chinensis HOM05D006537 ORTHO05D008186 1.3e-28 131.0 231 37.2
Lalb_Chr01g0003221 Lupinus albus HOM05D006537 ORTHO05D008186 2.2e-28 130.2 219 37.9
Psat7g214000 Pisum sativum HOM05D006537 ORTHO05D008186 2.8e-28 129.8 231 35.5
vmacro22675 Vaccinium macrocarpon HOM05D006537 ORTHO05D008186 6.3e-28 128.6 210 39.5
TPR.G34202 Trifolium pratense HOM05D006537 ORTHO05D008186 1.1e-27 127.9 232 35.8
Lsat_1_v5_gn_2_34721 Lactuca sativa HOM05D006537 ORTHO05D008186 1.4e-27 127.5 231 36.8
Os02g0272600 Oryza sativa ssp. japonica HOM05D006537 ORTHO05D008186 6.9e-27 125.2 231 35.9
Pp3c14_4280 Physcomitrium patens HOM05D006537 ORTHO05D008186 6.9e-27 125.2 232 37.9
Zm00001eb237480 Zea mays HOM05D006537 ORTHO05D008186 9.1e-27 124.8 230 36.1
SMO174G0097 Selaginella moellendorffii HOM05D006537 ORTHO05D008186 1.5e-26 124.0 234 36.3
Pp3c10_5780 Physcomitrium patens HOM05D006537 ORTHO05D008186 2.6e-26 123.2 232 37.1
Manes.04G042325 Manihot esculenta HOM05D006537 ORTHO05D008186 3.4e-26 122.9 190 42.1
Mapoly0042s0024 Marchantia polymorpha HOM05D006537 ORTHO05D008186 4.5e-26 122.5 229 36.2
EL10Ac3g05587 Beta vulgaris HOM05D006537 ORTHO05D008186 1.0e-25 121.3 252 35.3
Nitab4.5_0003132g0110 Nicotiana tabacum HOM05D006537 ORTHO05D008186 1.7e-25 120.6 210 38.1
ATR0686G132 Amborella trichopoda HOM05D006537 ORTHO05D008186 3.8e-25 119.4 229 35.4
COL.COLO4_24411 Corchorus olitorius HOM05D006537 ORTHO05D008186 3.8e-25 119.4 196 40.3
Dinv44198 Davidia involucrata HOM05D006537 ORTHO05D008186 5.0e-25 119.0 175 43.4
A10p04320 Brassica napus HOM05D006537 ORTHO05D008186 1.1e-24 117.9 187 39.6
CAN.G65.183 Capsicum annuum HOM05D006537 ORTHO05D008186 1.1e-24 117.9 231 34.2
Nn1g09574 Nelumbo nucifera HOM05D006537 ORTHO05D008186 4.2e-24 115.9 231 34.6
AUR62002287 Chenopodium quinoa HOM05D006537 ORTHO05D008186 3.0e-22 109.8 190 36.3
Sc25g0002980 Simmondsia chinensis HOM05D006537 ORTHO05D008186 1.1e-21 107.8 231 34.2
Sabra07G0103400 Salix brachista HOM05D006537 ORTHO05D008186 2.6e-21 106.7 200 38.0
MSTRG.24999 Avicennia marina HOM05D006537 ORTHO05D008186 1.3e-20 104.4 210 35.2
Cpa.g.sc409.1 Carica papaya HOM05D006537 ORTHO05D008186 1.6e-18 97.4 190 36.3
Lj6A56G22 Lonicera japonica HOM05D006537 ORTHO05D008186 2.0e-18 97.1 183 34.4
BraA10t42709Z Brassica rapa HOM05D006537 ORTHO05D008186 1.0e-17 94.7 145 40.7
Hund03149 Selenicereus undatus HOM05D006537 ORTHO05D008186 1.7e-17 94.0 245 34.3
PGR083G1737 Punica granatum HOM05D006537 ORTHO05D008186 1.0e-14 84.7 231 28.1
SHI21233 Sapria himalayana HOM05D006537 ORTHO05D008186 3.0e-14 83.2 143 38.5
PSO675G6606 Papaver somniferum HOM05D006537 ORTHO05D008186 1.4e-11 74.3 152 36.8
PSO017G0422 Papaver somniferum HOM05D006537 ORTHO05D008186 4.1e-11 72.8 98 48.0
PSO832G3398 Papaver somniferum HOM05D006537 ORTHO05D008186 4.1e-11 72.8 98 48.0
PSO229G0026 Papaver somniferum HOM05D006537 ORTHO05D008186 7.0e-11 72.0 152 36.2
PSO675G1145 Papaver somniferum HOM05D006537 ORTHO05D008186 7.0e-11 72.0 152 36.2
SalBow7G4202 Salvia bowleyana HOM05D006537 ORTHO05D008186 9.1e-11 71.6 91 46.2
PRCOL_00006256 Prasinoderma coloniale HOM05D006537 ORTHO05D008186 2.7e-10 70.1 172 27.3
FAN07G2858 Fragaria x ananassa HOM05D006537 ORTHO05D008186 1.3e-09 67.8 111 41.4
Lj6P622T45 Lonicera japonica HOM05D006537 ORTHO05D008186 1.1e-08 64.7 121 34.7
CBR_g29804 Chara braunii HOM05D006537 ORTHO05D008186 5.5e-08 62.4 59 50.8
DCAR_022903 Daucus carota HOM05D006537 ORTHO05D008186 8.0e-07 58.5 112 35.7
A10p04420 Brassica napus HOM05D006537 ORTHO05D008186 4.0e-06 56.2 82 39.0


User provided reference genes

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