Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 4.9e-121 438.7 420 100.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 7.1e-19 99.4 69 72.5
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.1e-17 93.2 64 70.3
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 6.7e-17 92.8 64 68.8
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 6.7e-17 92.8 70 67.1
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 8.7e-17 92.4 70 64.3
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.3e-16 90.5 70 61.4
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 9.6e-16 89.0 70 61.4
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 1.3e-15 88.6 74 64.9
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.6e-15 88.2 70 62.9
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.8e-15 87.4 64 65.6
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.7e-15 87.0 64 62.5
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 4.8e-15 86.7 68 63.2
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.8e-15 86.7 64 62.5
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 4.8e-15 86.7 64 62.5
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 4.8e-15 86.7 62 64.5
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 4.8e-15 86.7 64 62.5
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 6.2e-15 86.3 64 62.5
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 8.1e-15 85.9 64 60.9
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 8.1e-15 85.9 64 62.5
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 8.1e-15 85.9 64 62.5
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 8.1e-15 85.9 64 62.5
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 8.1e-15 85.9 64 60.9
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 8.1e-15 85.9 64 60.9
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.1e-14 85.5 64 62.5
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 1.1e-14 85.5 62 62.9
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 1.4e-14 85.1 64 60.9
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.4e-14 85.1 64 62.5
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 1.4e-14 85.1 64 62.5
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.4e-14 85.1 64 62.5
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-14 85.1 64 60.9
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-14 85.1 64 62.5
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.8e-14 84.7 62 61.3
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.8e-14 84.7 62 61.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 1.8e-14 84.7 64 62.5
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 1.8e-14 84.7 62 62.9
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.4e-14 84.3 64 60.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.4e-14 84.3 66 63.6
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.4e-14 84.3 66 59.1
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 3.1e-14 84.0 62 62.9
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.1e-14 84.0 64 60.9
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.0e-14 83.6 64 60.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.0e-14 83.6 64 60.9
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.0e-14 83.6 62 62.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 4.0e-14 83.6 62 62.9
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 4.0e-14 83.6 64 60.9
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.0e-14 83.6 64 59.4
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.0e-14 83.6 64 59.4
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 4.0e-14 83.6 62 62.9
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 5.3e-14 83.2 64 59.4
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 5.3e-14 83.2 62 62.9
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 5.3e-14 83.2 64 59.4
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.3e-14 83.2 62 62.9
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 5.3e-14 83.2 62 59.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 5.3e-14 83.2 64 59.4
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 5.3e-14 83.2 64 59.4
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 6.9e-14 82.8 62 61.3
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 6.9e-14 82.8 62 62.9
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 59.4
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 6.9e-14 82.8 70 57.1
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 59.4
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 59.4
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 59.4
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 59.4
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 57.8
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 6.9e-14 82.8 64 57.8
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 6.9e-14 82.8 62 61.3
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 57.8
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 62.9
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 9.0e-14 82.4 62 61.3
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 9.0e-14 82.4 64 59.4
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.2e-13 82.0 64 60.9
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.2e-13 82.0 64 59.4
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.5e-13 81.6 62 59.7
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.5e-13 81.6 62 61.3
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.5e-13 81.6 62 61.3
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.6e-13 80.9 70 55.7
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 2.6e-13 80.9 64 57.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.6e-13 80.9 68 57.4
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 2.6e-13 80.9 64 57.8
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 3.4e-13 80.5 64 56.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.4e-13 80.5 64 56.2
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.4e-13 80.5 64 56.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 3.4e-13 80.5 300 35.3
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-13 80.5 62 61.3
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-13 80.5 62 61.3
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 3.4e-13 80.5 62 59.7
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 4.5e-13 80.1 64 57.8
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 4.5e-13 80.1 62 59.7
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 4.5e-13 80.1 62 59.7
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.5e-13 80.1 62 61.3
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 4.5e-13 80.1 62 61.3
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 4.5e-13 80.1 62 59.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 5.8e-13 79.7 64 57.8
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 5.8e-13 79.7 64 56.2
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 7.6e-13 79.3 64 54.7
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 7.6e-13 79.3 62 59.7
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.6e-13 79.3 64 57.8
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 7.6e-13 79.3 298 38.6
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 9.9e-13 79.0 70 51.4
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.3e-12 78.6 60 63.3
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 2.2e-12 77.8 72 52.8
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 3.8e-12 77.0 64 56.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 3.8e-12 77.0 64 54.7
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-12 77.0 64 54.7
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.8e-12 77.0 64 54.7
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 3.8e-12 77.0 66 56.1
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 3.8e-12 77.0 64 54.7
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 6.4e-12 76.3 65 60.0
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 8.4e-12 75.9 64 53.1
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 8.4e-12 75.9 62 54.8
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.1e-11 75.5 62 58.1
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 1.4e-11 75.1 62 53.2
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.2e-11 73.9 62 54.8
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 3.2e-11 73.9 62 54.8
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 2.1e-10 71.2 294 36.4
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 2.7e-10 70.9 296 37.8
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 3.5e-10 70.5 51 64.7
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 6.0e-10 69.7 292 33.6
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 7.9e-10 69.3 290 28.6
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.9e-09 67.0 296 34.5
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 6.7e-09 66.2 64 51.6
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.5e-08 64.3 111 36.0
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 7.4e-08 62.8 55 54.5
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.4e-08 62.8 44 63.6
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 3.7e-07 60.5 54 50.0


User provided reference genes

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