Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 2.7e-275 951.4 507 100.0
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 2.1e-97 360.5 472 45.1
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 5.6e-95 352.4 440 47.3
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 7.1e-90 335.5 438 46.1
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.3e-87 326.6 409 47.7
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.1e-86 323.9 469 43.5
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 2.8e-86 323.6 442 43.0
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 3.7e-86 323.2 460 43.5
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 6.2e-86 322.4 438 44.7
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.1e-85 321.6 474 42.6
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.1e-85 321.6 475 42.5
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.8e-85 320.9 459 44.0
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 9.0e-85 318.5 436 42.9
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 9.0e-85 318.5 443 43.1
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.2e-84 318.2 436 43.3
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 2.6e-84 317.0 438 43.4
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 5.8e-84 315.8 448 43.8
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 1.0e-83 315.1 436 42.7
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 1.0e-83 315.1 452 42.3
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 1.7e-83 314.3 436 43.1
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.7e-83 314.3 466 41.8
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 2.9e-83 313.5 474 41.8
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.8e-83 313.2 475 40.2
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 3.8e-83 313.2 438 42.5
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 4.9e-83 312.8 451 43.2
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 4.9e-83 312.8 473 42.7
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 4.9e-83 312.8 499 39.9
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 6.5e-83 312.4 435 43.9
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.1e-82 311.6 470 41.9
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 1.4e-82 311.2 436 42.9
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 1.9e-82 310.8 436 43.3
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.9e-82 310.8 467 42.0
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 2.5e-82 310.5 459 43.1
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 3.2e-82 310.1 443 42.2
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 4.2e-82 309.7 436 43.1
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 4.2e-82 309.7 436 43.1
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 4.2e-82 309.7 468 40.2
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 5.5e-82 309.3 466 39.7
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 7.1e-82 308.9 439 41.2
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.6e-81 307.8 486 40.7
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 1.6e-81 307.8 444 42.1
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 1.6e-81 307.8 468 40.0
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 2.7e-81 307.0 444 41.9
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 2.7e-81 307.0 439 42.6
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 2.7e-81 307.0 434 43.1
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 3.5e-81 306.6 444 41.9
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 3.5e-81 306.6 446 42.4
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 4.6e-81 306.2 475 41.1
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 6.0e-81 305.8 452 42.0
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 6.0e-81 305.8 472 40.9
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 7.9e-81 305.4 444 43.0
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 1.8e-80 304.3 442 41.0
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 3.0e-80 303.5 479 40.3
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 5.1e-80 302.8 467 39.4
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 8.7e-80 302.0 469 40.9
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 1.1e-79 301.6 459 41.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 1.1e-79 301.6 442 43.9
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.5e-79 301.2 437 42.3
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.9e-79 300.8 491 39.7
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 1.9e-79 300.8 480 39.4
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 3.3e-79 300.1 437 42.8
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.3e-79 299.7 442 43.7
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 7.4e-79 298.9 449 42.1
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.3e-78 298.1 440 41.6
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.3e-78 298.1 486 39.1
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.6e-78 297.7 467 39.2
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 2.1e-78 297.4 490 40.0
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 4.8e-78 296.2 472 40.3
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 4.8e-78 296.2 474 41.1
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 4.8e-78 296.2 438 41.8
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 6.3e-78 295.8 492 38.4
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 8.2e-78 295.4 438 42.0
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.1e-77 295.0 447 42.7
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 1.1e-77 295.0 468 39.5
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 1.4e-77 294.7 456 40.8
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.8e-77 294.3 438 42.0
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 3.1e-77 293.5 461 39.7
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 1.2e-76 291.6 472 40.9
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 5.9e-76 289.3 436 40.6
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 1.3e-75 288.1 544 37.5
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.7e-75 287.7 405 43.0
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 2.2e-75 287.3 471 39.1
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.8e-75 286.6 466 39.7
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 9.3e-74 282.0 455 39.1
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 1.2e-73 281.6 498 39.6
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 1.8e-72 277.7 436 40.6
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.8e-69 267.7 497 37.2
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 2.9e-67 260.4 486 37.7
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 3.2e-66 256.9 452 36.1
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 1.1e-63 248.4 423 38.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 7.4e-63 245.7 545 33.9
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-62 244.6 383 39.2
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.4e-61 241.5 404 39.9
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.9e-58 231.1 472 38.1
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 5.5e-58 229.6 374 40.6
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 7.2e-58 229.2 379 36.9
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 4.7e-57 226.5 352 41.8
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 1.8e-56 224.6 335 42.4
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 5.1e-56 223.0 378 37.3
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 8.8e-56 222.2 340 40.0
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 7.0e-53 212.6 393 38.2
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 3.5e-52 210.3 338 40.2
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 5.7e-47 193.0 338 37.6
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 7.5e-47 192.6 341 37.8
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 1.0e-43 182.2 197 49.7
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.3e-43 181.8 330 36.1
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-40 171.4 179 50.3
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-40 171.4 179 50.3
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 9.1e-37 159.1 362 32.0
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.2e-36 158.7 153 55.6
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 5.0e-35 153.3 153 52.9
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.6e-33 148.3 163 47.2
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 2.7e-33 147.5 434 30.0
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 2.3e-32 144.4 247 36.8
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 3.4e-31 140.6 148 48.0
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 7.5e-31 139.4 162 48.8
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 3.5e-28 130.6 176 43.2
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 9.5e-26 122.5 280 32.1
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 9.5e-26 122.5 294 31.6
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 8.0e-25 119.4 472 28.2
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.3e-22 112.1 206 39.8
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.3e-22 112.1 476 26.1
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 8.3e-22 109.4 99 55.6
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 1.1e-21 109.0 489 27.6
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 1.1e-21 109.0 161 41.6
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 5.6e-18 96.7 152 43.4
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 5.2e-16 90.1 85 49.4
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 5.8e-15 86.7 434 26.0
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 2.4e-13 81.3 69 60.9
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 3.2e-13 80.9 80 52.5
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 1.2e-12 79.0 59 69.5
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 6.6e-11 73.2 74 54.1
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 1.1e-08 65.9 69 52.2
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 4.0e-08 63.9 52 53.8
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 6.8e-08 63.2 56 55.4
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 8.9e-08 62.8 83 43.4


User provided reference genes

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