Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre13.g571750 Chlamydomonas reinhardtii HOM05D003659 ORTHO05D004298 7.9e-126 453.8 222 100.0
CBR_g38858 Chara braunii HOM05D003659 ORTHO05D004298 1.5e-55 220.3 183 57.9
MCO11G512 Micromonas commoda HOM05D003659 ORTHO05D004298 1.5e-55 220.3 195 54.4
Hund06525 Selenicereus undatus HOM05D003659 ORTHO05D004298 2.3e-53 213.0 188 53.7
Pp3c4_7140 Physcomitrium patens HOM05D003659 ORTHO05D004298 4.0e-53 212.2 202 53.0
Mapoly0146s0027 Marchantia polymorpha HOM05D003659 ORTHO05D004298 5.7e-52 208.4 184 56.0
CAN.G407.57 Capsicum annuum HOM05D003659 ORTHO05D004298 7.5e-52 208.0 189 51.9
DCAR_025575 Daucus carota HOM05D003659 ORTHO05D004298 1.3e-51 207.2 181 53.0
EL10Ac9g22216 Beta vulgaris HOM05D003659 ORTHO05D004298 2.2e-51 206.5 176 55.7
Lj9A494G39 Lonicera japonica HOM05D003659 ORTHO05D004298 2.9e-51 206.1 188 52.1
Peaxi162Scf00332g00435 Petunia axillaris HOM05D003659 ORTHO05D004298 2.9e-51 206.1 188 51.6
Migut.D01114 Erythranthe guttata HOM05D003659 ORTHO05D004298 6.4e-51 204.9 205 50.7
PSO170G6877 Papaver somniferum HOM05D003659 ORTHO05D004298 6.4e-51 204.9 181 53.0
PSO017G1057 Papaver somniferum HOM05D003659 ORTHO05D004298 8.3e-51 204.5 181 53.0
AUR62026991 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.1e-50 204.1 181 53.6
Pp3c12_21450 Physcomitrium patens HOM05D003659 ORTHO05D004298 1.8e-50 203.4 206 51.9
Hund00440 Selenicereus undatus HOM05D003659 ORTHO05D004298 1.8e-50 203.4 181 53.0
Actinidia08946 Actinidia chinensis HOM05D003659 ORTHO05D004298 2.4e-50 203.0 188 50.5
Cc04_g05030 Coffea canephora HOM05D003659 ORTHO05D004298 2.4e-50 203.0 188 52.1
Lalb_Chr23g0268261 Lupinus albus HOM05D003659 ORTHO05D004298 3.2e-50 202.6 187 51.3
PGSC0003DMG400014120 Solanum tuberosum HOM05D003659 ORTHO05D004298 3.2e-50 202.6 188 51.1
MSTRG.9405 Avicennia marina HOM05D003659 ORTHO05D004298 4.1e-50 202.2 205 49.3
SGA_v2.0_scaffold5G02776 Striga asiatica HOM05D003659 ORTHO05D004298 4.1e-50 202.2 203 50.7
Zm00001eb041170 Zea mays HOM05D003659 ORTHO05D004298 4.1e-50 202.2 187 51.9
Nn2g12325 Nelumbo nucifera HOM05D003659 ORTHO05D004298 5.4e-50 201.8 181 51.9
Os08g0278900 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 5.4e-50 201.8 183 52.5
Os08g0440500 Oryza sativa ssp. japonica HOM05D003659 ORTHO05D004298 5.4e-50 201.8 213 51.6
MSTRG.22794 Avicennia marina HOM05D003659 ORTHO05D004298 7.0e-50 201.4 181 52.5
THA.LOC104803632 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 7.0e-50 201.4 185 50.8
HPP92_004679 Vanilla planifolia HOM05D003659 ORTHO05D004298 7.0e-50 201.4 188 52.1
Glyma.06G062900 Glycine max HOM05D003659 ORTHO05D004298 9.2e-50 201.1 188 50.5
Lj1g0004529 Lotus japonicus HOM05D003659 ORTHO05D004298 9.2e-50 201.1 182 52.2
AUR62030831 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.2e-49 200.7 189 53.4
Zm00001eb179820 Zea mays HOM05D003659 ORTHO05D004298 1.2e-49 200.7 183 52.5
MD08G1057800 Malus domestica HOM05D003659 ORTHO05D004298 1.6e-49 200.3 176 53.4
C04p55110 Brassica napus HOM05D003659 ORTHO05D004298 2.0e-49 199.9 180 51.7
BolC4t27050H Brassica oleracea HOM05D003659 ORTHO05D004298 2.0e-49 199.9 180 51.7
Migut.I00701 Erythranthe guttata HOM05D003659 ORTHO05D004298 2.0e-49 199.9 205 49.8
Gohir.A05G058400 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.0e-49 199.9 179 52.0
Gohir.D05G060500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 2.0e-49 199.9 179 52.0
Gorai.009G061600 Gossypium raimondii HOM05D003659 ORTHO05D004298 2.0e-49 199.9 179 52.0
Lj5A80T55 Lonicera japonica HOM05D003659 ORTHO05D004298 2.0e-49 199.9 180 52.2
Oeu060128.1 Olea europaea HOM05D003659 ORTHO05D004298 2.0e-49 199.9 188 50.5
GSVIVG01034217001 Vitis vinifera HOM05D003659 ORTHO05D004298 2.0e-49 199.9 187 51.3
MELO3C016972.2 Cucumis melo HOM05D003659 ORTHO05D004298 2.7e-49 199.5 181 51.4
Glyma.04G061900 Glycine max HOM05D003659 ORTHO05D004298 2.7e-49 199.5 176 52.3
HanXRQChr08g0235851 Helianthus annuus HOM05D003659 ORTHO05D004298 2.7e-49 199.5 188 48.9
A04p19520 Brassica napus HOM05D003659 ORTHO05D004298 3.5e-49 199.1 180 51.7
BraA04t17546Z Brassica rapa HOM05D003659 ORTHO05D004298 3.5e-49 199.1 180 51.7
Duzib150G0849 Durio zibethinus HOM05D003659 ORTHO05D004298 3.5e-49 199.1 176 52.8
Duzib168G1659 Durio zibethinus HOM05D003659 ORTHO05D004298 3.5e-49 199.1 179 52.0
ECA247G2368 Erigeron canadensis HOM05D003659 ORTHO05D004298 3.5e-49 199.1 180 51.1
Prupe.1G392400 Prunus persica HOM05D003659 ORTHO05D004298 3.5e-49 199.1 181 51.4
Rhsim08G0207200 Rhododendron simsii HOM05D003659 ORTHO05D004298 3.5e-49 199.1 188 50.5
Solyc03g117020.4 Solanum lycopersicum HOM05D003659 ORTHO05D004298 3.5e-49 199.1 205 47.8
Sopen03g035920 Solanum pennellii HOM05D003659 ORTHO05D004298 3.5e-49 199.1 205 47.8
vmacro16858 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.5e-49 199.1 188 50.0
vmacro19047 Vaccinium macrocarpon HOM05D003659 ORTHO05D004298 3.5e-49 199.1 188 50.5
ATR0739G101 Amborella trichopoda HOM05D003659 ORTHO05D004298 4.6e-49 198.7 180 50.6
MSTRG.11175 Avicennia marina HOM05D003659 ORTHO05D004298 4.6e-49 198.7 211 48.3
BcaC02g08370 Brassica carinata HOM05D003659 ORTHO05D004298 4.6e-49 198.7 180 51.1
ClCG05G016430 Citrullus lanatus HOM05D003659 ORTHO05D004298 4.6e-49 198.7 188 50.5
Dinv23291 Davidia involucrata HOM05D003659 ORTHO05D004298 4.6e-49 198.7 181 50.3
arahy.Tifrunner.gnm1.ann1.48QDBJ Arachis hypogaea HOM05D003659 ORTHO05D004298 5.9e-49 198.4 176 52.8
arahy.Tifrunner.gnm1.ann1.85LDPV Arachis hypogaea HOM05D003659 ORTHO05D004298 5.9e-49 198.4 176 52.8
BcaB06g28036 Brassica carinata HOM05D003659 ORTHO05D004298 5.9e-49 198.4 180 51.7
CDE05G0949 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 5.9e-49 198.4 176 53.4
FvH4_2g40990 Fragaria vesca HOM05D003659 ORTHO05D004298 5.9e-49 198.4 181 51.9
Lsat_1_v5_gn_5_8201 Lactuca sativa HOM05D003659 ORTHO05D004298 5.9e-49 198.4 188 50.0
arahy.Tifrunner.gnm1.ann1.Q7FMUW Arachis hypogaea HOM05D003659 ORTHO05D004298 7.8e-49 198.0 179 51.4
CsaV3_4G036690 Cucumis sativus L. HOM05D003659 ORTHO05D004298 7.8e-49 198.0 189 49.2
Sed0006058 Sechium edule HOM05D003659 ORTHO05D004298 7.8e-49 198.0 181 51.4
Actinidia25461 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.0e-48 197.6 185 50.8
FAN27G2887 Fragaria x ananassa HOM05D003659 ORTHO05D004298 1.0e-48 197.6 181 51.9
Gorai.001G037100 Gossypium raimondii HOM05D003659 ORTHO05D004298 1.0e-48 197.6 179 52.0
MD15G1038400 Malus domestica HOM05D003659 ORTHO05D004298 1.0e-48 197.6 181 50.8
Actinidia18243 Actinidia chinensis HOM05D003659 ORTHO05D004298 1.3e-48 197.2 185 50.8
AL4G16270 Arabidopsis lyrata HOM05D003659 ORTHO05D004298 1.3e-48 197.2 180 52.2
CSS0004565 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.3e-48 197.2 181 50.3
CSS0014874 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.3e-48 197.2 181 50.3
Gohir.A07G031500 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.3e-48 197.2 184 51.1
HanXRQChr04g0098481 Helianthus annuus HOM05D003659 ORTHO05D004298 1.3e-48 197.2 181 50.8
Nitab4.5_0001454g0190 Nicotiana tabacum HOM05D003659 ORTHO05D004298 1.3e-48 197.2 197 49.2
Sed0005308 Sechium edule HOM05D003659 ORTHO05D004298 1.3e-48 197.2 176 52.8
TWI32G0040 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.3e-48 197.2 203 47.8
TWI34G1103 Tripterygium wilfordii HOM05D003659 ORTHO05D004298 1.3e-48 197.2 203 47.3
Atru.chr7.2534 Acer truncatum HOM05D003659 ORTHO05D004298 1.7e-48 196.8 188 48.9
Aa31LG7G12130 Aethionema arabicum HOM05D003659 ORTHO05D004298 1.7e-48 196.8 180 51.7
CSS0027457 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.7e-48 196.8 188 50.0
CSS0033149 Camellia sinensis var. sinensis HOM05D003659 ORTHO05D004298 1.7e-48 196.8 188 50.0
Carub.0004s0471 Capsella rubella HOM05D003659 ORTHO05D004298 1.7e-48 196.8 180 51.7
ECA246G1998 Erigeron canadensis HOM05D003659 ORTHO05D004298 1.7e-48 196.8 187 49.2
Thhalv10000317m.g Eutrema salsugineum HOM05D003659 ORTHO05D004298 1.7e-48 196.8 180 51.7
Gohir.D07G035300 Gossypium hirsutum HOM05D003659 ORTHO05D004298 1.7e-48 196.8 179 52.0
Lalb_Chr08g0244391 Lupinus albus HOM05D003659 ORTHO05D004298 1.7e-48 196.8 182 51.1
RcHm_v2.0_Chr6g0299581 Rosa chinensis HOM05D003659 ORTHO05D004298 1.7e-48 196.8 181 50.8
Aqoxy7G01595 Aquilegia oxysepala HOM05D003659 ORTHO05D004298 2.3e-48 196.4 181 50.8
AT2G25110 Arabidopsis thaliana HOM05D003659 ORTHO05D004298 2.3e-48 196.4 180 52.2
Cfa013072 Carpinus fangiana HOM05D003659 ORTHO05D004298 2.3e-48 196.4 181 50.3
QL02p019557 Quercus lobata HOM05D003659 ORTHO05D004298 2.3e-48 196.4 181 49.7
TAR625G1087 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.3e-48 196.4 181 50.3
TAR625G1310 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.3e-48 196.4 181 50.3
Cpa.g.sc127.19 Carica papaya HOM05D003659 ORTHO05D004298 3.0e-48 196.1 176 51.7
FAN20G3050 Fragaria x ananassa HOM05D003659 ORTHO05D004298 3.0e-48 196.1 180 51.7
Lsat_1_v5_gn_1_32141 Lactuca sativa HOM05D003659 ORTHO05D004298 3.0e-48 196.1 181 49.2
Oeu027829.1 Olea europaea HOM05D003659 ORTHO05D004298 3.0e-48 196.1 205 48.8
Psat5g032160 Pisum sativum HOM05D003659 ORTHO05D004298 3.0e-48 196.1 182 52.2
Rhsim12G0187700 Rhododendron simsii HOM05D003659 ORTHO05D004298 3.0e-48 196.1 188 49.5
Manes.03G010100 Manihot esculenta HOM05D003659 ORTHO05D004298 3.9e-48 195.7 204 47.5
Phvul.009G088100 Phaseolus vulgaris HOM05D003659 ORTHO05D004298 3.9e-48 195.7 176 52.3
Potri.006G263200 Populus trichocarpa HOM05D003659 ORTHO05D004298 3.9e-48 195.7 176 51.7
SMO304G0007 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 3.9e-48 195.7 209 50.7
arahy.Tifrunner.gnm1.ann1.7GH63I Arachis hypogaea HOM05D003659 ORTHO05D004298 5.0e-48 195.3 179 50.8
BcaC07g40890 Brassica carinata HOM05D003659 ORTHO05D004298 5.0e-48 195.3 180 51.1
A09p55870 Brassica napus HOM05D003659 ORTHO05D004298 5.0e-48 195.3 180 51.1
C08p38860 Brassica napus HOM05D003659 ORTHO05D004298 5.0e-48 195.3 180 51.1
BraA09t40990Z Brassica rapa HOM05D003659 ORTHO05D004298 5.0e-48 195.3 180 51.1
Potri.018G020700 Populus trichocarpa HOM05D003659 ORTHO05D004298 5.0e-48 195.3 178 52.2
GSVIVG01035892001 Vitis vinifera HOM05D003659 ORTHO05D004298 5.0e-48 195.3 188 48.9
Sabra06G0205400 Salix brachista HOM05D003659 ORTHO05D004298 6.6e-48 194.9 176 51.7
BolC8t51458H Brassica oleracea HOM05D003659 ORTHO05D004298 8.6e-48 194.5 180 51.1
CARHR116580 Cardamine hirsuta HOM05D003659 ORTHO05D004298 8.6e-48 194.5 180 51.1
Sp4g04120 Schrenkiella parvula HOM05D003659 ORTHO05D004298 8.6e-48 194.5 180 51.7
Manes.16G128300 Manihot esculenta HOM05D003659 ORTHO05D004298 1.1e-47 194.1 181 49.2
PGR044G1948 Punica granatum HOM05D003659 ORTHO05D004298 1.1e-47 194.1 186 50.0
Ah.16g104980 Amaranthus hybridus HOM05D003659 ORTHO05D004298 1.5e-47 193.7 196 48.0
DCAR_021366 Daucus carota HOM05D003659 ORTHO05D004298 1.5e-47 193.7 191 50.3
Nn8g39829 Nelumbo nucifera HOM05D003659 ORTHO05D004298 1.5e-47 193.7 182 50.5
Thecc.09G017100 Theobroma cacao HOM05D003659 ORTHO05D004298 1.5e-47 193.7 181 50.3
HanXRQChr05g0153781 Helianthus annuus HOM05D003659 ORTHO05D004298 3.3e-47 192.6 207 47.8
SEGI_01700 Sequoiadendron giganteum HOM05D003659 ORTHO05D004298 3.3e-47 192.6 184 50.5
Ciclev10009450m.g Citrus clementina HOM05D003659 ORTHO05D004298 4.3e-47 192.2 181 48.6
CiPaw.08G006800 Carya illinoinensis HOM05D003659 ORTHO05D004298 5.6e-47 191.8 181 49.2
Eucgr.C02663 Eucalyptus grandis HOM05D003659 ORTHO05D004298 7.3e-47 191.4 181 49.2
Ah.01g006880 Amaranthus hybridus HOM05D003659 ORTHO05D004298 9.5e-47 191.0 216 46.3
SalBow7G4756 Salvia bowleyana HOM05D003659 ORTHO05D004298 9.5e-47 191.0 166 52.4
SHI18485 Sapria himalayana HOM05D003659 ORTHO05D004298 9.5e-47 191.0 181 51.4
CDE02G2060 Ceratophyllum demersum HOM05D003659 ORTHO05D004298 1.2e-46 190.7 166 53.6
SMO340G0294 Selaginella moellendorffii HOM05D003659 ORTHO05D004298 2.1e-46 189.9 179 52.0
COL.COLO4_03628 Corchorus olitorius HOM05D003659 ORTHO05D004298 2.8e-46 189.5 166 53.6
unitig_61.g26227 Utricularia gibba HOM05D003659 ORTHO05D004298 1.4e-45 187.2 190 48.4
Medtr3g106130 Medicago truncatula HOM05D003659 ORTHO05D004298 1.2e-44 184.1 202 46.0
Sc12g0008380 Simmondsia chinensis HOM05D003659 ORTHO05D004298 2.4e-42 176.4 167 50.9
Oeu004335.5 Olea europaea HOM05D003659 ORTHO05D004298 4.1e-42 175.6 213 41.8
Haze_21430 Corylus avellana HOM05D003659 ORTHO05D004298 2.7e-41 172.9 231 39.4
Pp3c9_3320 Physcomitrium patens HOM05D003659 ORTHO05D004298 2.7e-41 172.9 202 49.0
unitig_0.g1106 Utricularia gibba HOM05D003659 ORTHO05D004298 3.5e-41 172.6 219 42.5
HPP92_010392 Vanilla planifolia HOM05D003659 ORTHO05D004298 5.6e-39 165.2 180 45.0
Lsat_1_v5_gn_4_87041 Lactuca sativa HOM05D003659 ORTHO05D004298 1.2e-38 164.1 183 45.9
PRCOL_00006403 Prasinoderma coloniale HOM05D003659 ORTHO05D004298 5.2e-37 158.7 179 43.0
Dinv21405 Davidia involucrata HOM05D003659 ORTHO05D004298 4.7e-30 135.6 117 53.0
TPR.G3109 Trifolium pratense HOM05D003659 ORTHO05D004298 2.3e-29 133.3 182 40.7
AUR62012468 Chenopodium quinoa HOM05D003659 ORTHO05D004298 3.4e-28 129.4 189 39.2
AUR62031594 Chenopodium quinoa HOM05D003659 ORTHO05D004298 1.1e-26 124.4 179 39.7
TAR636G3496 Trochodendron aralioides HOM05D003659 ORTHO05D004298 2.7e-25 119.8 208 36.1
THA.LOC104804845 Tarenaya hassleriana HOM05D003659 ORTHO05D004298 2.5e-23 113.2 103 48.5
Nitab4.5_0026787g0010 Nicotiana tabacum HOM05D003659 ORTHO05D004298 5.6e-23 112.1 107 50.5
arahy.Tifrunner.gnm1.ann1.K0Y0BK Arachis hypogaea HOM05D003659 ORTHO05D004298 4.7e-22 109.0 92 50.0
Haze_27667 Corylus avellana HOM05D003659 ORTHO05D004298 1.8e-21 107.1 142 39.4
Cc10_g09910 Coffea canephora HOM05D003659 ORTHO05D004298 1.1e-18 97.8 96 50.0
Cc05_g03490 Coffea canephora HOM05D003659 ORTHO05D004298 1.9e-18 97.1 97 48.5
Cc00_g05940 Coffea canephora HOM05D003659 ORTHO05D004298 4.2e-18 95.9 101 46.5
TPR.G40670 Trifolium pratense HOM05D003659 ORTHO05D004298 4.2e-18 95.9 82 51.2
Cc07_g20440 Coffea canephora HOM05D003659 ORTHO05D004298 5.4e-18 95.5 102 46.1
EL10Ac2g04128 Beta vulgaris HOM05D003659 ORTHO05D004298 1.2e-17 94.4 151 36.4
Cc10_g10650 Coffea canephora HOM05D003659 ORTHO05D004298 2.1e-17 93.6 91 49.5
Cc08_g06110 Coffea canephora HOM05D003659 ORTHO05D004298 1.0e-16 91.3 102 46.1
Dinv40986 Davidia involucrata HOM05D003659 ORTHO05D004298 5.6e-15 85.5 103 41.7
Cc08_g07620 Coffea canephora HOM05D003659 ORTHO05D004298 9.6e-15 84.7 80 50.0
Cc05_g01640 Coffea canephora HOM05D003659 ORTHO05D004298 4.8e-14 82.4 135 37.8
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 6.2e-14 82.0 62 54.8
Ca_15770_v3 Cicer arietinum L. HOM05D003659 ORTHO05D004298 2.4e-13 80.1 62 54.8
Actinidia36884 Actinidia chinensis HOM05D003659 ORTHO05D004298 3.1e-13 79.7 84 46.4
Cc00_g21920 Coffea canephora HOM05D003659 ORTHO05D004298 1.2e-12 77.8 112 42.0
Cc00_g06440 Coffea canephora HOM05D003659 ORTHO05D004298 1.5e-12 77.4 109 39.4
HPP92_010427 Vanilla planifolia HOM05D003659 ORTHO05D004298 1.5e-12 77.4 117 38.5
Cfa024316 Carpinus fangiana HOM05D003659 ORTHO05D124421 1.4e-10 70.9 223 29.6
Cfa026278 Carpinus fangiana HOM05D003659 ORTHO05D121859 2.3e-08 63.5 135 34.1
AagrBONN_evm.TU.Sc2ySwM_117.1898 Anthoceros agrestis HOM05D003659 ORTHO05D004298 3.9e-08 62.8 48 64.6
FvH4_3g15950 Fragaria vesca HOM05D003659 ORTHO05D004298 1.9e-07 60.5 52 53.8


User provided reference genes

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