Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 4.0e-81 304.7 151 100.0
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 3.7e-26 122.1 149 46.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 6.3e-26 121.3 141 46.1
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 8.2e-26 120.9 141 46.1
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 1.8e-25 119.8 139 44.6
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.8e-25 119.8 142 46.5
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 5.3e-25 118.2 134 48.5
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 5.3e-25 118.2 144 43.1
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 6.9e-25 117.9 143 44.8
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 6.9e-25 117.9 148 45.3
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 9.1e-25 117.5 142 45.1
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 9.1e-25 117.5 141 44.7
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.2e-24 117.1 142 43.7
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.2e-24 117.1 134 47.8
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.2e-24 117.1 134 47.8
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.2e-24 117.1 143 46.2
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 1.2e-24 117.1 138 49.3
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.2e-24 117.1 134 47.8
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 1.5e-24 116.7 134 47.0
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.5e-24 116.7 134 47.8
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.5e-24 116.7 134 47.8
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-24 116.3 150 46.7
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 2.6e-24 115.9 142 44.4
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.6e-24 115.9 149 45.6
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 2.6e-24 115.9 149 45.6
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 3.4e-24 115.5 149 43.0
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 3.4e-24 115.5 134 47.0
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 3.4e-24 115.5 141 44.0
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 4.5e-24 115.2 150 46.0
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 4.5e-24 115.2 150 46.0
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 4.5e-24 115.2 150 46.0
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 4.5e-24 115.2 147 43.5
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 4.5e-24 115.2 134 47.0
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 4.5e-24 115.2 148 43.9
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 4.5e-24 115.2 138 48.6
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 4.5e-24 115.2 141 46.1
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 5.9e-24 114.8 148 44.6
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.9e-24 114.8 144 42.4
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 7.7e-24 114.4 144 45.1
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 1.0e-23 114.0 141 41.8
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 1.0e-23 114.0 130 47.7
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 1.0e-23 114.0 141 46.1
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.0e-23 114.0 142 43.7
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 1.0e-23 114.0 134 45.5
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 1.7e-23 113.2 144 43.1
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.7e-23 113.2 137 45.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 1.7e-23 113.2 137 45.3
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.2e-23 112.8 136 46.3
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.2e-23 112.8 136 46.3
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 2.2e-23 112.8 129 47.3
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 2.2e-23 112.8 145 41.4
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 2.9e-23 112.5 125 49.6
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 2.9e-23 112.5 144 44.4
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 2.9e-23 112.5 145 46.9
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 2.9e-23 112.5 145 46.9
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 2.9e-23 112.5 138 44.9
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.9e-23 112.5 129 48.8
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 3.8e-23 112.1 142 42.3
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 3.8e-23 112.1 149 43.6
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 3.8e-23 112.1 147 42.9
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 3.8e-23 112.1 137 44.5
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 3.8e-23 112.1 137 44.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 3.8e-23 112.1 135 47.4
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 3.8e-23 112.1 148 43.9
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 5.0e-23 111.7 144 44.4
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 5.0e-23 111.7 148 42.6
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 5.0e-23 111.7 141 44.7
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 5.0e-23 111.7 135 46.7
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 5.0e-23 111.7 147 44.2
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 5.0e-23 111.7 120 49.2
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 5.0e-23 111.7 144 41.7
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 6.5e-23 111.3 136 45.6
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 6.5e-23 111.3 133 47.4
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 6.5e-23 111.3 140 42.9
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 6.5e-23 111.3 149 43.0
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 8.5e-23 110.9 141 43.3
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 8.5e-23 110.9 141 43.3
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 1.1e-22 110.5 141 43.3
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 1.1e-22 110.5 138 44.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.1e-22 110.5 126 50.0
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 1.4e-22 110.2 145 42.8
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 1.4e-22 110.2 141 44.7
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 1.4e-22 110.2 141 43.3
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.4e-22 110.2 138 44.9
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 3.2e-22 109.0 155 44.5
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 3.2e-22 109.0 125 48.0
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 3.2e-22 109.0 142 43.0
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 4.2e-22 108.6 133 45.9
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 4.2e-22 108.6 144 43.1
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 4.2e-22 108.6 137 40.9
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 4.2e-22 108.6 143 46.2
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 4.2e-22 108.6 143 46.2
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 5.5e-22 108.2 137 44.5
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 5.5e-22 108.2 137 43.1
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 5.5e-22 108.2 134 44.0
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 5.5e-22 108.2 137 44.5
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 5.5e-22 108.2 114 48.2
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 5.5e-22 108.2 135 45.2
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 7.2e-22 107.8 143 43.4
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 7.2e-22 107.8 137 44.5
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 9.4e-22 107.5 144 40.3
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 9.4e-22 107.5 141 43.3
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 9.4e-22 107.5 119 47.9
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 9.4e-22 107.5 129 46.5
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.6e-21 106.7 138 43.5
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.6e-21 106.7 130 48.5
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 1.6e-21 106.7 132 46.2
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.6e-21 106.7 141 43.3
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.6e-21 106.7 141 43.3
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 2.7e-21 105.9 130 45.4
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 2.7e-21 105.9 134 43.3
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 2.7e-21 105.9 118 47.5
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 3.6e-21 105.5 164 40.2
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 3.6e-21 105.5 143 41.3
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 4.7e-21 105.1 115 49.6
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 4.7e-21 105.1 153 41.8
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 4.7e-21 105.1 136 44.9
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 6.1e-21 104.8 118 45.8
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 7.9e-21 104.4 136 43.4
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 7.9e-21 104.4 118 45.8
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.0e-20 104.0 115 48.7
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 1.0e-20 104.0 139 42.4
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 1.0e-20 104.0 137 43.1
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.4e-20 103.6 148 41.2
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 1.4e-20 103.6 134 42.5
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.8e-20 103.2 150 42.0
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.3e-20 102.8 122 45.9
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 2.3e-20 102.8 130 45.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 3.0e-20 102.4 111 45.9
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 3.9e-20 102.1 129 46.5
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 3.9e-20 102.1 121 44.6
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 1.1e-19 100.5 118 40.7
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.1e-19 100.5 147 40.1
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 1.5e-19 100.1 143 40.6
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.5e-19 100.1 115 45.2
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 4.4e-19 98.6 122 44.3
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.7e-18 96.7 132 43.9
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 1.7e-18 96.7 141 38.3
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.8e-18 95.9 133 43.6
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 2.8e-18 95.9 133 43.6
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 3.7e-18 95.5 145 39.3
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 8.2e-18 94.4 115 45.2
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.6e-16 90.1 98 44.9
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.6e-16 90.1 140 37.9
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 1.0e-15 87.4 141 36.9
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.7e-15 86.7 102 45.1
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 8.5e-15 84.3 131 42.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.5e-14 83.6 102 44.1
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 3.2e-14 82.4 129 36.4
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 4.7e-13 78.6 157 35.0
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 7.5e-11 71.2 62 50.0
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 9.7e-11 70.9 72 45.8
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 8.2e-10 67.8 144 33.3
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 1.1e-09 67.4 100 41.0
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 4.1e-09 65.5 116 32.8
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 5.9e-08 61.6 85 48.2
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 7.2e-06 54.7 90 37.8
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.4e-06 54.3 111 34.2


User provided reference genes

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