Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 0.0e+00 1602.4 1047 100.0
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 5.0e-37 161.0 540 28.5
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 6.1e-35 154.1 626 27.2
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 7.4e-33 147.1 511 27.4
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 4.7e-27 127.9 510 25.1
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 4.7e-27 127.9 511 24.3
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 4.7e-27 127.9 511 24.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 6.1e-27 127.5 512 25.6
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.0e-26 126.7 523 25.0
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.8e-26 125.9 517 25.0
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.8e-26 125.9 509 24.4
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 3.0e-26 125.2 509 25.9
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.0e-26 125.2 517 24.6
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 5.1e-26 124.4 513 24.6
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 8.8e-26 123.6 517 24.6
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.1e-25 123.2 591 27.2
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 1.5e-25 122.9 511 25.0
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 1.5e-25 122.9 509 25.0
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 2.0e-25 122.5 523 24.3
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 3.3e-25 121.7 517 24.0
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.4e-25 121.3 506 24.1
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 5.7e-25 120.9 505 24.4
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 5.7e-25 120.9 506 24.5
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 7.4e-25 120.6 505 23.6
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 7.4e-25 120.6 519 24.7
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 9.7e-25 120.2 517 23.8
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 9.7e-25 120.2 515 25.0
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 9.7e-25 120.2 514 22.8
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 1.3e-24 119.8 509 24.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 1.3e-24 119.8 505 24.0
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 2.8e-24 118.6 505 23.8
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 2.8e-24 118.6 490 27.1
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 3.7e-24 118.2 506 23.7
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.7e-24 118.2 506 23.7
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 3.7e-24 118.2 508 24.6
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 4.8e-24 117.9 527 23.9
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 4.8e-24 117.9 506 24.3
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 4.8e-24 117.9 506 24.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 6.3e-24 117.5 506 24.5
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 6.3e-24 117.5 508 24.4
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 6.3e-24 117.5 509 24.2
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 8.2e-24 117.1 508 25.2
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.1e-23 116.7 515 24.3
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 1.1e-23 116.7 515 24.3
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 1.1e-23 116.7 507 23.7
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 2.4e-23 115.5 520 24.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 2.4e-23 115.5 505 23.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.4e-23 115.5 505 23.6
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 2.4e-23 115.5 520 23.3
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 2.4e-23 115.5 519 24.3
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 5.3e-23 114.4 506 23.7
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 9.1e-23 113.6 506 24.1
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 1.2e-22 113.2 509 22.8
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.5e-22 112.8 512 23.6
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 2.6e-22 112.1 515 24.1
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 3.5e-22 111.7 521 23.6
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 4.5e-22 111.3 519 23.5
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 5.9e-22 110.9 507 23.3
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 5.9e-22 110.9 512 24.4
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 1.0e-21 110.2 506 23.1
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.0e-21 110.2 520 24.0
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 1.3e-21 109.8 512 22.9
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 1.3e-21 109.8 510 23.5
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.7e-21 109.4 517 23.8
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.2e-21 109.0 507 23.1
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 2.2e-21 109.0 517 23.8
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 5.0e-21 107.8 533 23.1
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 5.0e-21 107.8 508 23.8
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 8.5e-21 107.1 517 23.8
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 8.5e-21 107.1 510 22.9
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.1e-20 106.7 509 22.8
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.5e-20 106.3 512 23.4
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 1.9e-20 105.9 506 23.7
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 5.5e-20 104.4 510 22.4
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 9.4e-20 103.6 513 23.8
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 9.4e-20 103.6 481 24.9
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 1.6e-19 102.8 526 30.4
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 2.7e-19 102.1 574 22.1
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 3.6e-19 101.7 515 23.5
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 3.6e-19 101.7 526 24.3
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 6.1e-19 100.9 509 22.6
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.0e-18 100.1 510 22.5
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.6e-17 95.5 135 37.8
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 3.3e-17 95.1 517 22.4
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 3.3e-17 95.1 483 23.8
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 4.4e-17 94.7 130 37.7
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 9.7e-17 93.6 507 23.1
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.7e-16 92.8 136 36.0
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 1.7e-16 92.8 578 22.1
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.8e-16 92.0 491 24.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 6.3e-16 90.9 519 22.4
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.1e-15 90.1 66 57.6
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.1e-15 88.6 479 24.0
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 4.1e-15 88.2 506 21.9
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.0e-15 87.4 508 21.9
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.6e-14 86.3 508 21.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 3.8e-13 81.6 538 22.9
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 6.5e-13 80.9 505 21.0
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 7.2e-12 77.4 512 21.5
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 3.6e-11 75.1 73 42.5
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.0e-10 73.6 169 30.8
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 3.0e-10 72.0 465 23.7
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.2e-09 70.1 169 30.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 1.7e-08 66.2 193 26.9
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.3e-08 64.3 126 33.3
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 8.3e-08 63.9 51 47.1
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.0e-06 59.3 126 29.4


User provided reference genes

Program Settings