Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g556050 Chlamydomonas reinhardtii HOM05D006252 ORTHO05D007909 3.8e-103 378.3 201 100.0
MCO03G269 Micromonas commoda HOM05D006252 ORTHO05D007909 1.1e-33 147.5 183 44.3
AagrBONN_evm.TU.Sc2ySwM_362.2261 Anthoceros agrestis HOM05D006252 ORTHO05D007909 1.5e-27 127.1 150 45.3
Mapoly0005s0034 Marchantia polymorpha HOM05D006252 ORTHO05D007909 3.4e-27 125.9 167 39.5
CBR_g36656 Chara braunii HOM05D006252 ORTHO05D007909 2.9e-26 122.9 172 42.4
Cfa010288 Carpinus fangiana HOM05D006252 ORTHO05D007909 1.4e-25 120.6 165 38.8
HPP92_003365 Vanilla planifolia HOM05D006252 ORTHO05D007909 1.9e-25 120.2 159 44.0
SGA_v2.0_scaffold277G46698 Striga asiatica HOM05D006252 ORTHO05D007909 2.4e-25 119.8 157 40.8
Lj2A1006G34 Lonicera japonica HOM05D006252 ORTHO05D007909 7.1e-25 118.2 153 39.9
CiPaw.13G122300 Carya illinoinensis HOM05D006252 ORTHO05D007909 1.2e-24 117.5 152 41.4
AUR62014977 Chenopodium quinoa HOM05D006252 ORTHO05D007909 1.6e-24 117.1 162 37.0
TPR.G36832 Trifolium pratense HOM05D006252 ORTHO05D007909 2.7e-24 116.3 156 39.1
MD03G1128600 Malus domestica HOM05D006252 ORTHO05D007909 3.5e-24 115.9 165 37.6
Prupe.6G113200 Prunus persica HOM05D006252 ORTHO05D007909 3.5e-24 115.9 165 37.0
Nn6g35212 Nelumbo nucifera HOM05D006252 ORTHO05D007909 4.6e-24 115.5 150 40.7
Actinidia07187 Actinidia chinensis HOM05D006252 ORTHO05D007909 6.0e-24 115.2 157 39.5
Aqoxy1G01090 Aquilegia oxysepala HOM05D006252 ORTHO05D007909 6.0e-24 115.2 163 37.4
PGR102G1698 Punica granatum HOM05D006252 ORTHO05D007909 6.0e-24 115.2 158 39.2
RcHm_v2.0_Chr5g0056671 Rosa chinensis HOM05D006252 ORTHO05D007909 6.0e-24 115.2 165 38.2
Cpa.g.sc47.1 Carica papaya HOM05D006252 ORTHO05D007909 7.8e-24 114.8 152 40.8
ClCG03G002460 Citrullus lanatus HOM05D006252 ORTHO05D007909 7.8e-24 114.8 158 38.6
MELO3C004995.2 Cucumis melo HOM05D006252 ORTHO05D007909 7.8e-24 114.8 158 38.0
Manes.11G152500 Manihot esculenta HOM05D006252 ORTHO05D007909 7.8e-24 114.8 158 38.6
QL01p014977 Quercus lobata HOM05D006252 ORTHO05D007909 7.8e-24 114.8 157 39.5
Sabra09G0002100 Salix brachista HOM05D006252 ORTHO05D007909 7.8e-24 114.8 154 39.0
ECA233G2302 Erigeron canadensis HOM05D006252 ORTHO05D007909 1.3e-23 114.0 154 38.3
MD11G1148800 Malus domestica HOM05D006252 ORTHO05D007909 1.7e-23 113.6 165 36.4
Pp3c2_34110 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-23 113.6 176 38.6
Pp3c2_34120 Physcomitrium patens HOM05D006252 ORTHO05D007909 1.7e-23 113.6 176 38.6
Hund01525 Selenicereus undatus HOM05D006252 ORTHO05D007909 1.7e-23 113.6 156 38.5
Lsat_1_v5_gn_6_43381 Lactuca sativa HOM05D006252 ORTHO05D007909 2.3e-23 113.2 173 34.1
CsaV3_1G013140 Cucumis sativus L. HOM05D006252 ORTHO05D007909 3.0e-23 112.8 158 38.0
FvH4_3g30600 Fragaria vesca HOM05D006252 ORTHO05D007909 3.0e-23 112.8 165 37.0
FAN11G0619 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.0e-23 112.8 165 37.0
FAN16G0084 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.0e-23 112.8 165 37.0
FAN21G1285 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.0e-23 112.8 165 37.0
FAN25G2218 Fragaria x ananassa HOM05D006252 ORTHO05D007909 3.0e-23 112.8 165 37.0
Lj3g0021853 Lotus japonicus HOM05D006252 ORTHO05D007909 3.0e-23 112.8 159 39.0
Medtr4g057210 Medicago truncatula HOM05D006252 ORTHO05D007909 3.0e-23 112.8 161 37.9
Peaxi162Scf00983g00015 Petunia axillaris HOM05D006252 ORTHO05D007909 3.0e-23 112.8 163 38.0
ATR0043G002 Amborella trichopoda HOM05D006252 ORTHO05D007909 3.9e-23 112.5 149 40.3
AUR62029150 Chenopodium quinoa HOM05D006252 ORTHO05D007909 3.9e-23 112.5 162 35.8
Potri.004G217000 Populus trichocarpa HOM05D006252 ORTHO05D007909 3.9e-23 112.5 152 38.2
Rhsim01G0210400 Rhododendron simsii HOM05D006252 ORTHO05D007909 5.1e-23 112.1 160 40.0
Sabra04G0147700 Salix brachista HOM05D006252 ORTHO05D007909 5.1e-23 112.1 152 38.8
Ca_19323_v3 Cicer arietinum L. HOM05D006252 ORTHO05D007909 6.6e-23 111.7 161 37.9
GSVIVG01031460001 Vitis vinifera HOM05D006252 ORTHO05D007909 6.6e-23 111.7 148 40.5
COL.COLO4_19198 Corchorus olitorius HOM05D006252 ORTHO05D007909 8.7e-23 111.3 154 39.0
Thhalv10002672m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 8.7e-23 111.3 159 35.8
Gorai.009G090100 Gossypium raimondii HOM05D006252 ORTHO05D007909 8.7e-23 111.3 163 37.4
Psat7g223760 Pisum sativum HOM05D006252 ORTHO05D007909 8.7e-23 111.3 157 38.9
vmacro14388 Vaccinium macrocarpon HOM05D006252 ORTHO05D007909 8.7e-23 111.3 151 39.1
Zm00001eb258190 Zea mays HOM05D006252 ORTHO05D007909 8.7e-23 111.3 170 39.4
Cc08_g04460 Coffea canephora HOM05D006252 ORTHO05D007909 1.1e-22 110.9 157 36.9
EL10Ac9g22626 Beta vulgaris HOM05D006252 ORTHO05D007909 1.5e-22 110.5 162 37.0
Migut.D02295 Erythranthe guttata HOM05D006252 ORTHO05D007909 1.5e-22 110.5 163 37.4
Cc01_g10250 Coffea canephora HOM05D006252 ORTHO05D007909 1.9e-22 110.2 157 36.9
unitig_746.g26615 Utricularia gibba HOM05D006252 ORTHO05D007909 1.9e-22 110.2 164 34.8
Ciclev10029219m.g Citrus clementina HOM05D006252 ORTHO05D007909 2.5e-22 109.8 158 38.0
Gohir.D05G088000 Gossypium hirsutum HOM05D006252 ORTHO05D007909 2.5e-22 109.8 163 36.8
Thecc.09G298300 Theobroma cacao HOM05D006252 ORTHO05D007909 2.5e-22 109.8 148 40.5
MSTRG.18705 Avicennia marina HOM05D006252 ORTHO05D007909 3.3e-22 109.4 159 37.1
Pp3c1_5300 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.3e-22 109.4 176 38.1
Pp3c1_5320 Physcomitrium patens HOM05D006252 ORTHO05D007909 3.3e-22 109.4 176 38.1
Sed0008981 Sechium edule HOM05D006252 ORTHO05D007909 3.3e-22 109.4 169 34.3
Solyc11g066410.2 Solanum lycopersicum HOM05D006252 ORTHO05D007909 3.3e-22 109.4 166 35.5
PGSC0003DMG400000456 Solanum tuberosum HOM05D006252 ORTHO05D007909 3.3e-22 109.4 166 35.5
Nitab4.5_0000173g0140 Nicotiana tabacum HOM05D006252 ORTHO05D007909 4.3e-22 109.0 155 39.4
Sopen11g026160 Solanum pennellii HOM05D006252 ORTHO05D007909 4.3e-22 109.0 166 35.5
TAR633G0073 Trochodendron aralioides HOM05D006252 ORTHO05D007909 4.3e-22 109.0 151 39.1
Gohir.A05G086700 Gossypium hirsutum HOM05D006252 ORTHO05D007909 5.6e-22 108.6 157 37.6
Nitab4.5_0005665g0020 Nicotiana tabacum HOM05D006252 ORTHO05D007909 7.3e-22 108.2 163 37.4
TWI79G1340 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 7.3e-22 108.2 165 35.8
Atru.chr3.3505 Acer truncatum HOM05D006252 ORTHO05D007909 1.2e-21 107.5 158 38.0
Aa31LG4G14200 Aethionema arabicum HOM05D006252 ORTHO05D007909 1.2e-21 107.5 158 34.2
SMO118G0111 Selaginella moellendorffii HOM05D006252 ORTHO05D007909 1.6e-21 107.1 181 34.3
BcaB05g23061 Brassica carinata HOM05D006252 ORTHO05D007909 2.1e-21 106.7 158 34.8
BcaC09g49661 Brassica carinata HOM05D006252 ORTHO05D007909 2.1e-21 106.7 158 34.8
C01p34110 Brassica napus HOM05D006252 ORTHO05D007909 2.1e-21 106.7 158 34.8
BolC1t03381H Brassica oleracea HOM05D006252 ORTHO05D007909 2.1e-21 106.7 158 34.8
CSS0004051 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 2.1e-21 106.7 157 36.3
CSS0044427 Camellia sinensis var. sinensis HOM05D006252 ORTHO05D007909 2.1e-21 106.7 157 36.3
Glyma.11G192500 Glycine max HOM05D006252 ORTHO05D007909 2.1e-21 106.7 153 37.9
Sp5g16320 Schrenkiella parvula HOM05D006252 ORTHO05D007909 2.1e-21 106.7 158 34.8
THA.LOC104810882 Tarenaya hassleriana HOM05D006252 ORTHO05D007909 2.1e-21 106.7 152 36.2
arahy.Tifrunner.gnm1.ann1.Q498P0 Arachis hypogaea HOM05D006252 ORTHO05D007909 2.8e-21 106.3 154 37.0
Glyma.12G081500 Glycine max HOM05D006252 ORTHO05D007909 2.8e-21 106.3 167 36.5
A01p26720 Brassica napus HOM05D006252 ORTHO05D007909 3.6e-21 105.9 158 34.8
BraA01t02602Z Brassica rapa HOM05D006252 ORTHO05D007909 3.6e-21 105.9 158 34.8
TWI75G0936 Tripterygium wilfordii HOM05D006252 ORTHO05D007909 3.6e-21 105.9 165 35.2
VMungo1127G0830 Vigna mungo HOM05D006252 ORTHO05D007909 3.6e-21 105.9 159 36.5
arahy.Tifrunner.gnm1.ann1.4A8W5C Arachis hypogaea HOM05D006252 ORTHO05D007909 4.7e-21 105.5 150 38.0
HanXRQChr02g0055341 Helianthus annuus HOM05D006252 ORTHO05D007909 4.7e-21 105.5 157 35.0
Phvul.011G086500 Phaseolus vulgaris HOM05D006252 ORTHO05D007909 4.7e-21 105.5 159 35.8
AL5G23350 Arabidopsis lyrata HOM05D006252 ORTHO05D007909 8.1e-21 104.8 158 34.2
CDE02G0854 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 8.1e-21 104.8 155 34.8
Hma1.2p1_0051F.1_g029510 Hydrangea macrophylla HOM05D006252 ORTHO05D007909 8.1e-21 104.8 157 35.0
Lalb_Chr03g0027721 Lupinus albus HOM05D006252 ORTHO05D007909 8.1e-21 104.8 154 37.7
MBI02_g05768_MAGBIO Magnolia biondii HOM05D006252 ORTHO05D007909 8.1e-21 104.8 144 37.5
CDE08G0788 Ceratophyllum demersum HOM05D006252 ORTHO05D007909 1.1e-20 104.4 167 33.5
PSO063G5667 Papaver somniferum HOM05D006252 ORTHO05D007909 1.1e-20 104.4 149 36.2
SalBow6G6884 Salvia bowleyana HOM05D006252 ORTHO05D007909 1.1e-20 104.4 143 36.4
CARHR151120 Cardamine hirsuta HOM05D006252 ORTHO05D007909 1.4e-20 104.0 147 35.4
PSO339G3106 Papaver somniferum HOM05D006252 ORTHO05D007909 1.8e-20 103.6 149 35.6
Lalb_Chr19g0136901 Lupinus albus HOM05D006252 ORTHO05D007909 3.1e-20 102.8 154 37.7
AT3G44890 Arabidopsis thaliana HOM05D006252 ORTHO05D007909 6.9e-20 101.7 164 31.7
Carub.0005s1063 Capsella rubella HOM05D006252 ORTHO05D007909 1.5e-19 100.5 164 31.1
PRCOL_00001763 Prasinoderma coloniale HOM05D006252 ORTHO05D007909 4.4e-19 99.0 190 30.0
Dinv16227 Davidia involucrata HOM05D006252 ORTHO05D007909 3.2e-17 92.8 140 36.4
Sc21g0000330 Simmondsia chinensis HOM05D006252 ORTHO05D007909 6.9e-12 75.1 106 39.6
Ca_29226_v3 Cicer arietinum L. HOM05D006252 ORTHO05D008725 5.8e-11 72.0 152 27.6
Thhalv10023194m.g Eutrema salsugineum HOM05D006252 ORTHO05D007909 6.4e-10 68.6 102 35.3
Haze_24363 Corylus avellana HOM05D006252 ORTHO05D007909 4.2e-09 65.9 93 36.6
Oeu007732.1 Olea europaea HOM05D006252 ORTHO05D007909 3.5e-08 62.8 84 35.7
SEGI_37172 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 1.0e-07 61.2 83 38.6
Haze_24362 Corylus avellana HOM05D006252 ORTHO05D007909 3.9e-07 59.3 64 46.9
SEGI_26717 Sequoiadendron giganteum HOM05D006252 ORTHO05D007909 5.1e-07 58.9 73 42.5
Oeu007731.1 Olea europaea HOM05D006252 ORTHO05D007909 9.6e-06 54.7 56 50.0


User provided reference genes

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