Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 2.2e-120 435.6 216 100.0
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 1.2e-57 227.3 209 53.6
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 6.6e-53 211.5 208 50.5
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 6.2e-51 204.9 209 49.8
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 6.2e-51 204.9 207 48.3
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 1.8e-50 203.4 211 47.4
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 1.8e-50 203.4 207 46.9
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 1.8e-50 203.4 208 48.6
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 2.3e-50 203.0 206 47.6
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 4.0e-50 202.2 207 48.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 1.5e-49 200.3 211 47.4
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.0e-49 199.9 211 47.4
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 2.6e-49 199.5 206 47.1
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 9.9e-49 197.6 211 46.0
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 9.9e-49 197.6 209 46.9
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 9.9e-49 197.6 211 45.5
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 9.9e-49 197.6 207 45.9
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 1.7e-48 196.8 207 45.9
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 2.2e-48 196.4 208 46.6
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 2.2e-48 196.4 210 46.7
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 2.2e-48 196.4 209 46.9
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 3.8e-48 195.7 207 46.4
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 3.8e-48 195.7 212 47.2
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 3.8e-48 195.7 214 45.3
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 3.8e-48 195.7 207 45.4
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 3.8e-48 195.7 207 47.8
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 4.9e-48 195.3 209 47.4
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 6.4e-48 194.9 210 45.2
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 8.4e-48 194.5 209 46.9
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 8.4e-48 194.5 210 46.7
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 8.4e-48 194.5 211 47.4
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.1e-47 194.1 210 45.2
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 1.1e-47 194.1 207 45.4
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 1.4e-47 193.7 212 44.8
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.4e-47 193.7 214 44.4
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 1.4e-47 193.7 211 44.1
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 1.4e-47 193.7 207 45.9
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 1.4e-47 193.7 207 45.9
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 1.4e-47 193.7 207 45.9
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.9e-47 193.4 212 44.3
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.9e-47 193.4 209 46.9
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 1.9e-47 193.4 212 47.2
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 2.4e-47 193.0 207 45.9
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 3.2e-47 192.6 207 45.9
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 3.2e-47 192.6 212 44.8
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 3.2e-47 192.6 212 44.8
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 3.2e-47 192.6 212 44.3
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 4.1e-47 192.2 211 44.1
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 5.4e-47 191.8 213 45.1
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 5.4e-47 191.8 213 45.1
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 9.2e-47 191.0 207 45.9
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 9.2e-47 191.0 211 44.5
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 9.2e-47 191.0 210 44.3
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 9.2e-47 191.0 207 45.4
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.6e-46 190.3 209 44.0
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.6e-46 190.3 210 43.3
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.1e-46 189.9 211 46.0
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 2.7e-46 189.5 210 44.3
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 2.7e-46 189.5 211 45.0
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 3.5e-46 189.1 210 43.8
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 3.5e-46 189.1 206 44.7
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 3.5e-46 189.1 210 43.3
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 3.5e-46 189.1 212 45.3
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 6.0e-46 188.3 209 45.0
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 7.8e-46 188.0 210 43.8
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.0e-45 187.6 207 44.0
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.0e-45 187.6 209 45.9
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.3e-45 187.2 211 42.2
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 1.7e-45 186.8 212 43.9
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 2.3e-45 186.4 207 43.5
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.3e-45 186.4 207 43.5
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 2.3e-45 186.4 210 43.3
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 3.9e-45 185.7 207 44.9
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 3.9e-45 185.7 210 44.8
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 3.9e-45 185.7 210 42.4
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.9e-45 185.7 207 44.4
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 5.1e-45 185.3 210 42.9
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 8.6e-45 184.5 211 42.2
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 8.6e-45 184.5 207 45.4
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 1.1e-44 184.1 208 43.8
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 1.9e-44 183.3 211 41.7
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.9e-44 183.3 207 42.5
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.5e-44 183.0 207 44.4
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 4.3e-44 182.2 211 43.1
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 4.3e-44 182.2 207 42.0
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 5.6e-44 181.8 208 45.2
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.3e-44 181.4 210 44.3
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 9.6e-44 181.0 211 44.1
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.6e-43 180.3 219 42.9
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.6e-43 180.3 209 41.6
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 3.6e-43 179.1 207 42.5
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 6.2e-43 178.3 203 45.3
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 8.1e-43 177.9 207 42.5
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 1.8e-42 176.8 207 42.5
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.4e-42 176.4 208 42.3
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 5.2e-42 175.3 210 44.3
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 8.9e-42 174.5 190 49.5
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 8.9e-42 174.5 208 40.9
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.4e-41 172.2 242 39.7
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 1.3e-40 170.6 207 41.5
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.7e-40 170.2 188 46.3
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.9e-40 169.5 207 40.1
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 6.4e-40 168.3 188 44.1
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 8.4e-40 167.9 208 39.4
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 4.2e-39 165.6 208 40.4
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 4.6e-38 162.2 173 49.7
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 7.8e-38 161.4 167 47.9
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 6.6e-37 158.3 215 39.1
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 2.5e-36 156.4 202 42.1
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.3e-36 155.6 141 52.5
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 7.3e-36 154.8 208 38.9
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 1.3e-35 154.1 139 49.6
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.3e-35 154.1 155 46.5
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 6.2e-35 151.8 138 55.1
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 4.0e-34 149.1 202 40.1
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 4.9e-32 142.1 235 39.6
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 6.4e-32 141.7 210 35.2
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 5.4e-31 138.7 217 35.9
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 7.1e-31 138.3 210 33.3
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-30 137.5 137 45.3
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.1e-30 136.7 128 51.6
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 3.9e-29 132.5 198 37.9
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 3.9e-29 132.5 122 50.0
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 6.7e-29 131.7 191 40.8
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 8.7e-29 131.3 189 39.7
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.3e-28 129.4 209 31.6
Cre12.g553650 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D143570 2.4e-26 123.2 172 37.8
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.9e-24 115.5 210 30.0
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.9e-23 113.6 164 34.8
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 6.9e-18 95.1 114 44.7
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 1.2e-17 94.4 203 30.5
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 3.4e-17 92.8 76 53.9
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 6.5e-16 88.6 210 28.1
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 2.3e-13 80.1 206 28.6
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.5e-12 77.4 111 36.0
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 3.1e-10 69.7 59 49.2
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 5.3e-10 68.9 201 26.9
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 1.7e-08 63.9 175 28.0
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 3.8e-08 62.8 107 33.6
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 3.8e-08 62.8 107 33.6
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.8e-08 62.8 74 44.6
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 1.4e-07 60.8 107 32.7
PRCOL_00005781 Prasinoderma coloniale HOM05D053327 ORTHO05D048986 4.2e-07 59.3 119 29.4
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-06 57.8 54 53.7
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 2.1e-06 57.0 39 56.4


User provided reference genes

Program Settings