Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 0.0e+00 1201.0 646 100.0
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.4e-58 231.9 545 30.5
Cre02.g097600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 2.5e-55 221.1 620 30.5
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.3e-51 208.8 578 31.3
PRCOL_00003044 Prasinoderma coloniale HOM05D024924 ORTHO05D006483 8.4e-27 126.3 345 27.5
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 2.4e-10 71.6 163 32.5
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 3.5e-09 67.8 168 29.8
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 3.5e-09 67.8 153 32.0
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 4.6e-09 67.4 144 31.9
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 4.6e-09 67.4 144 31.9
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 7.9e-09 66.6 153 32.0
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 7.9e-09 66.6 155 32.9
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 7.9e-09 66.6 168 29.8
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.0e-08 66.2 174 28.7
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.0e-08 66.2 144 30.6
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 1.0e-08 66.2 153 30.7
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 1.0e-08 66.2 153 32.0
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.0e-08 66.2 174 28.7
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 1.3e-08 65.9 144 31.9
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 1.3e-08 65.9 174 28.2
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.8e-08 65.5 168 29.8
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 1.8e-08 65.5 165 28.5
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 2.3e-08 65.1 146 30.8
Pp3c12_8840 Physcomitrium patens HOM05D005825 ORTHO05D006483 2.3e-08 65.1 148 33.8
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 3.0e-08 64.7 174 28.7
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.0e-08 64.7 144 31.2
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 3.9e-08 64.3 174 29.3
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 3.9e-08 64.3 150 30.0
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 5.1e-08 63.9 147 31.3
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 5.1e-08 63.9 174 28.7
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.1e-08 63.9 144 29.2
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.1e-08 63.9 144 29.2
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 6.7e-08 63.5 144 31.2
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 6.7e-08 63.5 144 29.9
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 8.7e-08 63.2 174 28.7
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 8.7e-08 63.2 153 30.7
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 8.7e-08 63.2 153 30.1
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 8.7e-08 63.2 163 30.7
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.1e-07 62.8 161 29.8
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 1.1e-07 62.8 144 30.6
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.1e-07 62.8 144 31.9
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 1.1e-07 62.8 143 30.1
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 1.5e-07 62.4 163 28.8
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.5e-07 62.4 168 28.6
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.5e-07 62.4 153 30.7
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.5e-07 62.4 163 29.4
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.5e-07 62.4 163 29.4
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.5e-07 62.4 163 29.4
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.5e-07 62.4 163 29.4
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.5e-07 62.4 144 30.6
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 1.9e-07 62.0 142 31.0
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.9e-07 62.0 142 31.0
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 1.9e-07 62.0 143 30.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.9e-07 62.0 144 31.2
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.9e-07 62.0 144 30.6
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.9e-07 62.0 144 30.6
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 1.9e-07 62.0 144 30.6
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 2.5e-07 61.6 148 31.1
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 2.5e-07 61.6 150 29.3
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 2.5e-07 61.6 163 28.8
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 2.5e-07 61.6 144 31.2
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 2.5e-07 61.6 168 28.6
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 2.5e-07 61.6 156 30.1
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.5e-07 61.6 156 30.1
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 2.5e-07 61.6 150 28.0
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 3.3e-07 61.2 144 28.5
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.3e-07 61.2 147 30.6
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 4.3e-07 60.8 185 26.5
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 4.3e-07 60.8 142 31.0
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 4.3e-07 60.8 150 29.3
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 5.6e-07 60.5 163 29.4
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.6e-07 60.5 148 28.4
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 5.6e-07 60.5 148 31.1
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 5.6e-07 60.5 148 31.1
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 7.4e-07 60.1 148 31.1
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 7.4e-07 60.1 148 30.4
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 7.4e-07 60.1 150 29.3
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 7.4e-07 60.1 144 29.9
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 7.4e-07 60.1 150 30.7
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 9.6e-07 59.7 144 29.2
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 9.6e-07 59.7 150 30.7
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 9.6e-07 59.7 145 31.7
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 9.6e-07 59.7 163 29.4
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 1.3e-06 59.3 163 27.6
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.3e-06 59.3 144 28.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 1.3e-06 59.3 145 31.7
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 1.3e-06 59.3 145 31.7
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 1.3e-06 59.3 150 29.3
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.3e-06 59.3 165 26.7
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 1.3e-06 59.3 153 28.8
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.3e-06 59.3 144 30.6
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.3e-06 59.3 139 30.9
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.6e-06 58.9 150 30.0
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.6e-06 58.9 144 31.2
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.6e-06 58.9 175 28.0
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 1.6e-06 58.9 163 27.0
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 2.1e-06 58.5 150 28.7
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 2.1e-06 58.5 167 28.1
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 2.1e-06 58.5 139 29.5
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.8e-06 58.2 144 30.6
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 3.7e-06 57.8 145 31.0
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 3.7e-06 57.8 145 31.0
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 4.8e-06 57.4 147 28.6
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 4.8e-06 57.4 147 28.6
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 4.8e-06 57.4 139 29.5
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 4.8e-06 57.4 140 30.7
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 6.2e-06 57.0 144 29.2
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 8.1e-06 56.6 148 27.0
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 8.1e-06 56.6 139 30.9


User provided reference genes

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