Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g544401 Chlamydomonas reinhardtii HOM05D002978 ORTHO05D003339 5.5e-152 542.0 555 100.0
Cre12.g544110 Chlamydomonas reinhardtii HOM05D002978 ORTHO05D003339 2.0e-125 453.8 555 84.7
Cre17.g702550 Chlamydomonas reinhardtii HOM05D002978 ORTHO05D003339 9.1e-14 82.8 87 44.8
arahy.Tifrunner.gnm1.ann1.QZ6NJI Arachis hypogaea HOM05D002978 ORTHO05D003339 3.2e-11 74.3 92 40.2
Zm00001eb139340 Zea mays HOM05D002978 ORTHO05D003339 5.5e-11 73.6 87 41.4
Zm00001eb271320 Zea mays HOM05D002978 ORTHO05D003339 5.5e-11 73.6 87 46.0
Gohir.A06G134300 Gossypium hirsutum HOM05D002978 ORTHO05D003339 1.6e-10 72.0 94 43.6
Gohir.D06G135200 Gossypium hirsutum HOM05D002978 ORTHO05D003339 1.6e-10 72.0 94 43.6
Gorai.010G157100 Gossypium raimondii HOM05D002978 ORTHO05D003339 1.6e-10 72.0 94 43.6
CiPaw.12G116300 Carya illinoinensis HOM05D002978 ORTHO05D003339 2.1e-10 71.6 94 42.6
DCAR_007985 Daucus carota HOM05D002978 ORTHO05D003339 2.7e-10 71.2 94 40.4
SMO351G0608 Selaginella moellendorffii HOM05D002978 ORTHO05D003339 2.7e-10 71.2 87 40.2
Duzib192G0839 Durio zibethinus HOM05D002978 ORTHO05D003339 3.6e-10 70.9 94 42.6
THA.LOC104812871 Tarenaya hassleriana HOM05D002978 ORTHO05D003339 3.6e-10 70.9 94 41.5
arahy.Tifrunner.gnm1.ann1.9K4854 Arachis hypogaea HOM05D002978 ORTHO05D003339 6.1e-10 70.1 99 38.4
CSS0008947 Camellia sinensis var. sinensis HOM05D002978 ORTHO05D003339 6.1e-10 70.1 94 40.4
CSS0035095 Camellia sinensis var. sinensis HOM05D002978 ORTHO05D003339 6.1e-10 70.1 94 40.4
Prupe.2G137800 Prunus persica HOM05D002978 ORTHO05D003339 6.1e-10 70.1 85 42.4
Mapoly0040s0074 Marchantia polymorpha HOM05D002978 ORTHO05D003339 8.0e-10 69.7 89 44.9
Zm00001eb139320 Zea mays HOM05D002978 ORTHO05D003339 8.0e-10 69.7 87 40.2
Dinv14952 Davidia involucrata HOM05D002978 ORTHO05D003339 1.0e-09 69.3 94 41.5
Manes.18G010400 Manihot esculenta HOM05D002978 ORTHO05D003339 1.0e-09 69.3 94 40.4
Prupe.4G172800 Prunus persica HOM05D002978 ORTHO05D003339 1.0e-09 69.3 87 46.0
PGR004G0670 Punica granatum HOM05D002978 ORTHO05D003339 1.0e-09 69.3 94 41.5
SEGI_33568 Sequoiadendron giganteum HOM05D002978 ORTHO05D003339 1.0e-09 69.3 94 42.6
Thecc.06G178800 Theobroma cacao HOM05D002978 ORTHO05D003339 1.0e-09 69.3 94 41.5
Nitab4.5_0001208g0090 Nicotiana tabacum HOM05D002978 ORTHO05D003339 1.4e-09 68.9 94 41.5
HPP92_003618 Vanilla planifolia HOM05D002978 ORTHO05D003339 1.8e-09 68.6 87 43.7
CiPaw.12G116500 Carya illinoinensis HOM05D002978 ORTHO05D003339 2.3e-09 68.2 98 39.8
Lsat_1_v5_gn_4_51581 Lactuca sativa HOM05D002978 ORTHO05D003339 2.3e-09 68.2 94 40.4
Manes.03G104300 Manihot esculenta HOM05D002978 ORTHO05D003339 2.3e-09 68.2 94 40.4
COL.COLO4_31397 Corchorus olitorius HOM05D002978 ORTHO05D003339 3.0e-09 67.8 94 41.5
Eucgr.E03207 Eucalyptus grandis HOM05D002978 ORTHO05D003339 3.0e-09 67.8 97 39.2
MD05G1271300 Malus domestica HOM05D002978 ORTHO05D003339 3.0e-09 67.8 88 44.3
EL10Ac8g20454 Beta vulgaris HOM05D002978 ORTHO05D003339 4.0e-09 67.4 94 41.5
CDE03G0423 Ceratophyllum demersum HOM05D002978 ORTHO05D003339 4.0e-09 67.4 99 39.4
Gohir.A06G211900 Gossypium hirsutum HOM05D002978 ORTHO05D003339 4.0e-09 67.4 94 41.5
Gohir.D06G209300 Gossypium hirsutum HOM05D002978 ORTHO05D003339 4.0e-09 67.4 94 41.5
Lj4g0026587 Lotus japonicus HOM05D002978 ORTHO05D003339 4.0e-09 67.4 87 42.5
ECA234G1338 Erigeron canadensis HOM05D002978 ORTHO05D003339 5.2e-09 67.0 87 42.5
Eucgr.D00579 Eucalyptus grandis HOM05D002978 ORTHO05D003339 5.2e-09 67.0 97 40.2
Gorai.010G243200 Gossypium raimondii HOM05D002978 ORTHO05D003339 5.2e-09 67.0 94 41.5
Lj6g0023560 Lotus japonicus HOM05D002978 ORTHO05D003339 5.2e-09 67.0 94 39.4
Nn1g09501 Nelumbo nucifera HOM05D002978 ORTHO05D003339 5.2e-09 67.0 97 38.1
Phvul.003G073600 Phaseolus vulgaris HOM05D002978 ORTHO05D003339 5.2e-09 67.0 89 42.7
Potri.001G373400 Populus trichocarpa HOM05D002978 ORTHO05D003339 5.2e-09 67.0 94 39.4
THA.LOC104806137 Tarenaya hassleriana HOM05D002978 ORTHO05D003339 5.2e-09 67.0 94 39.4
GSVIVG01021139001 Vitis vinifera HOM05D002978 ORTHO05D003339 5.2e-09 67.0 94 40.4
CiPaw.09G065400 Carya illinoinensis HOM05D002978 ORTHO05D003339 6.8e-09 66.6 94 40.4
CiPaw.12G116400 Carya illinoinensis HOM05D002978 ORTHO05D003339 6.8e-09 66.6 87 42.5
Os07g0631100 Oryza sativa ssp. japonica HOM05D002978 ORTHO05D003339 6.8e-09 66.6 87 42.5
Hund21202 Selenicereus undatus HOM05D002978 ORTHO05D003339 6.8e-09 66.6 94 40.4
TWI31G1209 Tripterygium wilfordii HOM05D002978 ORTHO05D003339 6.8e-09 66.6 94 39.4
HPP92_005188 Vanilla planifolia HOM05D002978 ORTHO05D003339 6.8e-09 66.6 94 40.4
Zm00001eb375940 Zea mays HOM05D002978 ORTHO05D003339 6.8e-09 66.6 89 40.4
Glyma.10G069000 Glycine max HOM05D002978 ORTHO05D003339 8.8e-09 66.2 87 41.4
Glyma.13G152270 Glycine max HOM05D002978 ORTHO05D003339 8.8e-09 66.2 87 41.4
Phvul.006G180600 Phaseolus vulgaris HOM05D002978 ORTHO05D003339 8.8e-09 66.2 87 41.4
Psat7g117280 Pisum sativum HOM05D002978 ORTHO05D003339 8.8e-09 66.2 94 38.3
Potri.011G097300 Populus trichocarpa HOM05D002978 ORTHO05D003339 8.8e-09 66.2 94 39.4
Actinidia35233 Actinidia chinensis HOM05D002978 ORTHO05D003339 1.2e-08 65.9 94 38.3
MBI06_g08523_MAGBIO Magnolia biondii HOM05D002978 ORTHO05D003339 1.2e-08 65.9 97 39.2
Psat1g201720 Pisum sativum HOM05D002978 ORTHO05D003339 1.2e-08 65.9 87 41.4
Potri.014G056000 Populus trichocarpa HOM05D002978 ORTHO05D003339 1.2e-08 65.9 85 34.1
Prupe.2G141600 Prunus persica HOM05D002978 ORTHO05D003339 1.2e-08 65.9 85 38.8
Sc17g0005880 Simmondsia chinensis HOM05D002978 ORTHO05D003339 1.2e-08 65.9 94 39.4
TWI75G0188 Tripterygium wilfordii HOM05D002978 ORTHO05D003339 1.2e-08 65.9 87 42.5
Zm00001eb375890 Zea mays HOM05D002978 ORTHO05D003339 1.2e-08 65.9 89 40.4
Zm00001eb375920 Zea mays HOM05D002978 ORTHO05D003339 1.2e-08 65.9 89 40.4
Zm00001eb375930 Zea mays HOM05D002978 ORTHO05D003339 1.2e-08 65.9 89 39.3
Atru.chr10.1768 Acer truncatum HOM05D002978 ORTHO05D003339 1.5e-08 65.5 87 41.4
ATR0618G118 Amborella trichopoda HOM05D002978 ORTHO05D003339 1.5e-08 65.5 89 39.3
ATR0618G410 Amborella trichopoda HOM05D002978 ORTHO05D003339 1.5e-08 65.5 89 39.3
Aqoxy2G00452 Aquilegia oxysepala HOM05D002978 ORTHO05D003339 1.5e-08 65.5 87 41.4
CSS0031960 Camellia sinensis var. sinensis HOM05D002978 ORTHO05D003339 1.5e-08 65.5 87 41.4
CANSAT35G1257 Cannabis sativa HOM05D002978 ORTHO05D003339 1.5e-08 65.5 94 39.4
Ciclev10017311m.g Citrus clementina HOM05D002978 ORTHO05D003339 1.5e-08 65.5 97 39.2
MD11G1257300 Malus domestica HOM05D002978 ORTHO05D003339 1.5e-08 65.5 87 42.5
Manes.17G050900 Manihot esculenta HOM05D002978 ORTHO05D003339 1.5e-08 65.5 94 40.4
Os02g0134300 Oryza sativa ssp. japonica HOM05D002978 ORTHO05D003339 1.5e-08 65.5 87 44.8
AagrBONN_evm.TU.Sc2ySwM_362.2010 Anthoceros agrestis HOM05D002978 ORTHO05D003339 2.0e-08 65.1 85 41.2
Rhsim06G0203800 Rhododendron simsii HOM05D002978 ORTHO05D003339 2.0e-08 65.1 97 38.1
Zm00001eb375950 Zea mays HOM05D002978 ORTHO05D003339 2.0e-08 65.1 89 40.4
arahy.Tifrunner.gnm1.ann1.18P1UB Arachis hypogaea HOM05D002978 ORTHO05D003339 2.6e-08 64.7 87 40.2
Haze_09376 Corylus avellana HOM05D002978 ORTHO05D003339 2.6e-08 64.7 87 41.4
Medtr4g088115 Medicago truncatula HOM05D002978 ORTHO05D003339 2.6e-08 64.7 94 37.2
TPR.G11690 Trifolium pratense HOM05D002978 ORTHO05D003339 2.6e-08 64.7 94 38.3
Atru.chr2.2377 Acer truncatum HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 41.4
Aqoxy4G00572 Aquilegia oxysepala HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 41.4
arahy.Tifrunner.gnm1.ann1.0KL0LR Arachis hypogaea HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 41.4
arahy.Tifrunner.gnm1.ann1.AMD511 Arachis hypogaea HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 41.4
CAN.G220.4 Capsicum annuum HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 43.7
Cfa020626 Carpinus fangiana HOM05D002978 ORTHO05D003339 3.4e-08 64.3 94 38.3
ClCG05G009180 Citrullus lanatus HOM05D002978 ORTHO05D003339 3.4e-08 64.3 97 38.1
Cc05_g11550 Coffea canephora HOM05D002978 ORTHO05D003339 3.4e-08 64.3 94 39.4
MCO01G468 Micromonas commoda HOM05D002978 ORTHO05D003339 3.4e-08 64.3 86 33.7
Nitab4.5_0005016g0030 Nicotiana tabacum HOM05D002978 ORTHO05D003339 3.4e-08 64.3 94 38.3
Nitab4.5_0008221g0040 Nicotiana tabacum HOM05D002978 ORTHO05D003339 3.4e-08 64.3 94 38.3
PSO541G0391 Papaver somniferum HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 41.4
PSO675G9219 Papaver somniferum HOM05D002978 ORTHO05D003339 3.4e-08 64.3 87 41.4
vmacro11902 Vaccinium macrocarpon HOM05D002978 ORTHO05D003339 3.4e-08 64.3 94 39.4
Thhalv10001045m.g Eutrema salsugineum HOM05D002978 ORTHO05D003339 4.4e-08 63.9 94 37.2
Lalb_Chr20g0121461 Lupinus albus HOM05D002978 ORTHO05D003339 4.4e-08 63.9 87 40.2
Prupe.4G054600 Prunus persica HOM05D002978 ORTHO05D003339 4.4e-08 63.9 94 39.4
Sed0000209 Sechium edule HOM05D002978 ORTHO05D003339 4.4e-08 63.9 87 42.5
TPR.G27873 Trifolium pratense HOM05D002978 ORTHO05D003339 4.4e-08 63.9 94 37.2
GSVIVG01014257001 Vitis vinifera HOM05D002978 ORTHO05D003339 4.4e-08 63.9 97 39.2
Aa31LG9G6860 Aethionema arabicum HOM05D002978 ORTHO05D003339 5.7e-08 63.5 92 35.9
arahy.Tifrunner.gnm1.ann1.13S01Z Arachis hypogaea HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 40.2
arahy.Tifrunner.gnm1.ann1.D6H7UI Arachis hypogaea HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 40.2
AUR62014892 Chenopodium quinoa HOM05D002978 ORTHO05D003339 5.7e-08 63.5 94 38.3
AUR62031098 Chenopodium quinoa HOM05D002978 ORTHO05D003339 5.7e-08 63.5 94 38.3
Haze_06340 Corylus avellana HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 42.5
CsaV3_3G019610 Cucumis sativus L. HOM05D002978 ORTHO05D003339 5.7e-08 63.5 97 38.1
FvH4_3g19110 Fragaria vesca HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 41.4
FAN11G1671 Fragaria x ananassa HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 41.4
FAN16G3376 Fragaria x ananassa HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 41.4
FAN21G0723 Fragaria x ananassa HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 41.4
FAN25G1529 Fragaria x ananassa HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 41.4
HanXRQChr16g0518601 Helianthus annuus HOM05D002978 ORTHO05D003339 5.7e-08 63.5 62 46.8
HanXRQChr17g0561781 Helianthus annuus HOM05D002978 ORTHO05D003339 5.7e-08 63.5 62 46.8
MD03G1236500 Malus domestica HOM05D002978 ORTHO05D003339 5.7e-08 63.5 75 42.7
Nitab4.5_0002114g0120 Nicotiana tabacum HOM05D002978 ORTHO05D003339 5.7e-08 63.5 94 38.3
Nitab4.5_0005043g0040 Nicotiana tabacum HOM05D002978 ORTHO05D003339 5.7e-08 63.5 94 38.3
RcHm_v2.0_Chr5g0031911 Rosa chinensis HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 41.4
Sed0023077 Sechium edule HOM05D002978 ORTHO05D003339 5.7e-08 63.5 87 42.5
AL8G12480 Arabidopsis lyrata HOM05D002978 ORTHO05D003339 7.5e-08 63.2 87 40.2
AT5G46030 Arabidopsis thaliana HOM05D002978 ORTHO05D003339 7.5e-08 63.2 87 40.2
CBR_g37676 Chara braunii HOM05D002978 ORTHO05D003339 7.5e-08 63.2 85 40.0
MD05G1308200 Malus domestica HOM05D002978 ORTHO05D003339 7.5e-08 63.2 87 41.4
CARHR175900 Cardamine hirsuta HOM05D002978 ORTHO05D003339 9.7e-08 62.8 94 37.2
CDE02G4752 Ceratophyllum demersum HOM05D002978 ORTHO05D003339 9.7e-08 62.8 93 38.7
CDE04G3067 Ceratophyllum demersum HOM05D002978 ORTHO05D003339 9.7e-08 62.8 93 38.7
Lalb_Chr16g0384141 Lupinus albus HOM05D002978 ORTHO05D003339 9.7e-08 62.8 87 40.2
Carub.0008s0190 Capsella rubella HOM05D002978 ORTHO05D003339 1.3e-07 62.4 87 40.2
CAN.G361.20 Capsicum annuum HOM05D002978 ORTHO05D003339 1.3e-07 62.4 94 37.2
Gohir.D01G046400 Gossypium hirsutum HOM05D002978 ORTHO05D003339 1.3e-07 62.4 88 40.9
Gorai.002G065800 Gossypium raimondii HOM05D002978 ORTHO05D003339 1.3e-07 62.4 88 40.9
MCO01G745 Micromonas commoda HOM05D002978 ORTHO05D003339 1.3e-07 62.4 85 32.9
Solyc10g008870.3 Solanum lycopersicum HOM05D002978 ORTHO05D003339 1.3e-07 62.4 94 37.2
Sopen10g004660 Solanum pennellii HOM05D002978 ORTHO05D003339 1.3e-07 62.4 94 37.2
Prupe.2G137500 Prunus persica HOM05D002978 ORTHO05D003339 1.7e-07 62.0 74 37.8
Ca_18613_v3 Cicer arietinum L. HOM05D002978 ORTHO05D003339 2.2e-07 61.6 94 36.2
Ca_30603_v3 Cicer arietinum L. HOM05D002978 ORTHO05D003339 2.2e-07 61.6 94 36.2
RcHm_v2.0_Chr5g0009521 Rosa chinensis HOM05D002978 ORTHO05D003339 2.2e-07 61.6 94 37.2
SalBow7G4669 Salvia bowleyana HOM05D002978 ORTHO05D003339 2.2e-07 61.6 87 40.2
TWI39G0798 Tripterygium wilfordii HOM05D002978 ORTHO05D003339 2.2e-07 61.6 67 37.3
BcaC03g16821 Brassica carinata HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
BcaC06g34383 Brassica carinata HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
A02p29580 Brassica napus HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
A06p46230 Brassica napus HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
C02p46940 Brassica napus HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
C07p29230 Brassica napus HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
BolC2t10742H Brassica oleracea HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
BraA02t07984Z Brassica rapa HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
BraA06t27487Z Brassica rapa HOM05D002978 ORTHO05D003339 2.8e-07 61.2 92 33.7
CAN.G79.83 Capsicum annuum HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
FvH4_3g08380 Fragaria vesca HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
FAN11G1914 Fragaria x ananassa HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
FAN16G1877 Fragaria x ananassa HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
FAN25G2458 Fragaria x ananassa HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
Solyc02g077440.3 Solanum lycopersicum HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
Sopen02g022350 Solanum pennellii HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
PGSC0003DMG400031773 Solanum tuberosum HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
TAR487G0003 Trochodendron aralioides HOM05D002978 ORTHO05D003339 2.8e-07 61.2 93 37.6
unitig_0.g1975 Utricularia gibba HOM05D002978 ORTHO05D003339 2.8e-07 61.2 94 37.2
BcaC06g31503 Brassica carinata HOM05D002978 ORTHO05D003339 3.7e-07 60.8 92 33.7
BolC7t43465H Brassica oleracea HOM05D002978 ORTHO05D003339 3.7e-07 60.8 92 33.7
BolC8t48313H Brassica oleracea HOM05D002978 ORTHO05D003339 3.7e-07 60.8 92 33.7
Sp2g10890 Schrenkiella parvula HOM05D002978 ORTHO05D003339 3.7e-07 60.8 92 33.7
Haze_26205 Corylus avellana HOM05D002978 ORTHO05D003339 4.8e-07 60.5 85 36.5
FAN12G2631 Fragaria x ananassa HOM05D002978 ORTHO05D003339 6.3e-07 60.1 84 41.7
unitig_62.g23042 Utricularia gibba HOM05D002978 ORTHO05D003339 6.3e-07 60.1 102 36.3
Ciclev10033663m.g Citrus clementina HOM05D002978 ORTHO05D003339 1.1e-06 59.3 84 34.5
RcHm_v2.0_Chr4g0445711 Rosa chinensis HOM05D002978 ORTHO05D003339 1.1e-06 59.3 84 38.1
Ciclev10033894m.g Citrus clementina HOM05D002978 ORTHO05D003339 1.4e-06 58.9 68 38.2
RcHm_v2.0_Chr5g0078351 Rosa chinensis HOM05D002978 ORTHO05D003339 1.4e-06 58.9 85 36.5
FAN21G1837 Fragaria x ananassa HOM05D002978 ORTHO05D003339 2.4e-06 58.2 94 36.2
Nitab4.5_0010082g0020 Nicotiana tabacum HOM05D002978 ORTHO05D003339 2.4e-06 58.2 94 37.2
FvH4_3g43700 Fragaria vesca HOM05D002978 ORTHO05D003339 5.3e-06 57.0 94 37.2
FAN21G2653 Fragaria x ananassa HOM05D002978 ORTHO05D003339 5.3e-06 57.0 94 37.2
Prupe.2G141500 Prunus persica HOM05D002978 ORTHO05D003339 5.3e-06 57.0 85 38.8


User provided reference genes

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