Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.2e-61 239.6 118 100.0
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 8.1e-29 130.6 108 55.6
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 3.1e-28 128.6 108 54.6
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 6.9e-28 127.5 108 55.6
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 6.9e-28 127.5 108 54.6
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 8.9e-28 127.1 108 54.6
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 2.0e-27 125.9 108 53.7
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 2.6e-27 125.6 108 54.6
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 3.4e-27 125.2 108 52.8
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 5.8e-27 124.4 108 51.9
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 5.8e-27 124.4 108 52.8
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 7.6e-27 124.0 108 52.8
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 7.6e-27 124.0 108 52.8
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 9.9e-27 123.6 108 51.9
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.3e-26 123.2 108 51.9
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.7e-26 122.9 107 54.2
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 2.2e-26 122.5 108 51.9
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 2.2e-26 122.5 123 49.6
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 2.2e-26 122.5 108 53.7
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 2.9e-26 122.1 108 50.9
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 3.8e-26 121.7 117 48.7
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 3.8e-26 121.7 108 50.9
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 4.9e-26 121.3 108 50.0
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 4.9e-26 121.3 107 50.5
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 4.9e-26 121.3 107 52.3
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 50.0
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 51.9
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 50.9
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 50.9
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 51.9
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 50.0
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 6.4e-26 120.9 108 51.9
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 8.4e-26 120.6 108 51.9
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 8.4e-26 120.6 108 51.9
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 8.4e-26 120.6 108 51.9
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 8.4e-26 120.6 108 51.9
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 8.4e-26 120.6 108 51.9
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 8.4e-26 120.6 123 48.8
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 8.4e-26 120.6 123 48.8
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 8.4e-26 120.6 108 52.8
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 8.4e-26 120.6 107 51.4
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 50.9
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 50.9
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 50.9
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 50.9
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 52.8
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 1.1e-25 120.2 108 50.0
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.4e-25 119.8 108 50.9
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.4e-25 119.8 107 51.4
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 1.4e-25 119.8 108 50.9
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 1.4e-25 119.8 108 52.8
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 1.4e-25 119.8 109 50.5
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.4e-25 119.8 108 50.9
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.9e-25 119.4 108 49.1
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 2.4e-25 119.0 108 50.0
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 3.2e-25 118.6 108 50.9
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 3.2e-25 118.6 108 50.9
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 3.2e-25 118.6 112 50.0
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 3.2e-25 118.6 108 50.9
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 3.2e-25 118.6 108 50.9
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 4.2e-25 118.2 107 50.5
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 5.4e-25 117.9 108 50.0
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 5.4e-25 117.9 108 50.0
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 7.1e-25 117.5 107 51.4
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 7.1e-25 117.5 107 51.4
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 7.1e-25 117.5 107 51.4
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 7.1e-25 117.5 108 50.9
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 9.3e-25 117.1 108 50.9
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 1.2e-24 116.7 108 49.1
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 1.2e-24 116.7 108 49.1
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 1.2e-24 116.7 109 50.5
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.2e-24 116.7 107 50.5
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 2.1e-24 115.9 108 49.1
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 2.1e-24 115.9 108 48.1
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.1e-24 115.9 108 49.1
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 3.5e-24 115.2 108 50.9
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 4.6e-24 114.8 108 47.2
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 6.0e-24 114.4 108 47.2
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 7.8e-24 114.0 108 48.1
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 7.8e-24 114.0 105 48.6
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 7.8e-24 114.0 109 46.8
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 1.0e-23 113.6 136 44.1
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 1.0e-23 113.6 105 49.5
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 1.0e-23 113.6 107 48.6
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 1.7e-23 112.8 108 47.2
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 1.7e-23 112.8 113 46.9
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 2.3e-23 112.5 107 49.5
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 3.9e-23 111.7 96 53.1
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 8.7e-23 110.5 100 51.0
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.5e-22 109.8 96 52.1
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 5.6e-22 107.8 97 51.5
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 7.3e-22 107.5 136 40.4
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 9.6e-22 107.1 96 51.0
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 6.2e-21 104.4 118 44.1
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 8.1e-21 104.0 96 49.0
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 8.1e-21 104.0 141 39.0
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.4e-20 102.4 113 46.0
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 5.3e-20 101.3 112 43.8
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 5.8e-19 97.8 99 46.5
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 5.8e-19 97.8 88 50.0
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 5.8e-19 97.8 108 40.7
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.7e-18 96.3 150 36.0
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 1.3e-15 86.7 105 41.0
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 8.7e-15 84.0 75 49.3
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 7.4e-14 80.9 75 48.0
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 3.7e-13 78.6 75 46.7
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 4.8e-13 78.2 75 48.0
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 8.1e-13 77.4 63 55.6
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.4e-12 76.6 58 55.2
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 2.4e-12 75.9 105 37.1
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.2e-11 73.6 75 45.3
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.6e-11 72.4 58 55.2
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 2.6e-11 72.4 58 55.2
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 4.5e-11 71.6 61 54.1
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 4.5e-11 71.6 58 53.4
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.8e-11 71.2 58 53.4
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 7.6e-11 70.9 68 48.5
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.3e-10 70.1 69 49.3
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.3e-10 70.1 69 49.3
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 2.9e-10 68.9 61 49.2
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 8.4e-10 67.4 58 50.0
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 4.6e-08 61.6 49 55.1
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 4.6e-08 61.6 58 46.6
Zm00001eb125940 Zea mays HOM05D000001 ORTHO05D007569 9.6e-06 53.9 53 47.2


User provided reference genes

Program Settings