Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g536800 Chlamydomonas reinhardtii HOM05D006840 ORTHO05D008588 4.1e-156 554.7 281 100.0
MCO02G353 Micromonas commoda HOM05D006840 ORTHO05D008588 2.4e-23 113.6 213 33.3
unitig_22.g5732 Utricularia gibba HOM05D006840 ORTHO05D008588 1.6e-22 110.9 216 33.8
AUR62000298 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.0e-21 108.2 247 32.8
PSO170G0121 Papaver somniferum HOM05D006840 ORTHO05D008588 3.0e-21 106.7 223 32.7
EL10Ac4g09995 Beta vulgaris HOM05D006840 ORTHO05D008588 1.5e-20 104.4 219 33.3
AUR62006644 Chenopodium quinoa HOM05D006840 ORTHO05D008588 1.5e-20 104.4 216 32.4
Pp3c9_3810 Physcomitrium patens HOM05D006840 ORTHO05D008588 1.9e-20 104.0 217 32.7
arahy.Tifrunner.gnm1.ann1.SXK3FV Arachis hypogaea HOM05D006840 ORTHO05D008588 2.5e-20 103.6 240 32.5
PSO357G0633 Papaver somniferum HOM05D006840 ORTHO05D008588 2.5e-20 103.6 224 33.0
Sc06g0005020 Simmondsia chinensis HOM05D006840 ORTHO05D008588 3.3e-20 103.2 239 31.0
VMungo1383G2163 Vigna mungo HOM05D006840 ORTHO05D008588 5.6e-20 102.4 226 30.5
MSTRG.27397 Avicennia marina HOM05D006840 ORTHO05D008588 7.3e-20 102.1 254 30.3
Lalb_Chr03g0038681 Lupinus albus HOM05D006840 ORTHO05D008588 7.3e-20 102.1 228 32.9
Medtr7g080220 Medicago truncatula HOM05D006840 ORTHO05D008588 7.3e-20 102.1 234 34.2
Os01g0912700 Oryza sativa ssp. japonica HOM05D006840 ORTHO05D008588 7.3e-20 102.1 260 30.8
FAN09G3232 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.6e-19 100.9 249 31.3
Glyma.09G249400 Glycine max HOM05D006840 ORTHO05D008588 1.6e-19 100.9 225 31.1
AL2G20230 Arabidopsis lyrata HOM05D006840 ORTHO05D008588 2.1e-19 100.5 224 32.1
Phvul.008G053500 Phaseolus vulgaris HOM05D006840 ORTHO05D008588 2.8e-19 100.1 228 31.1
PGSC0003DMG400010521 Solanum tuberosum HOM05D006840 ORTHO05D008588 2.8e-19 100.1 239 30.5
HPP92_000447 Vanilla planifolia HOM05D006840 ORTHO05D008588 2.8e-19 100.1 246 30.9
AT1G65230 Arabidopsis thaliana HOM05D006840 ORTHO05D008588 3.6e-19 99.8 224 31.7
Eucgr.B01421 Eucalyptus grandis HOM05D006840 ORTHO05D008588 4.8e-19 99.4 225 33.3
FvH4_6g00410 Fragaria vesca HOM05D006840 ORTHO05D008588 4.8e-19 99.4 249 31.3
Glyma.18G243000 Glycine max HOM05D006840 ORTHO05D008588 4.8e-19 99.4 226 31.4
Thhalv10018969m.g Eutrema salsugineum HOM05D006840 ORTHO05D008588 6.2e-19 99.0 231 30.7
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 6.2e-19 99.0 286 30.4
Carub.0002s1076 Capsella rubella HOM05D006840 ORTHO05D008588 8.1e-19 98.6 232 31.9
GSVIVG01019072001 Vitis vinifera HOM05D006840 ORTHO05D008588 8.1e-19 98.6 233 31.8
HanXRQChr15g0492181 Helianthus annuus HOM05D006840 ORTHO05D008588 1.1e-18 98.2 229 32.3
CsaV3_1G044150 Cucumis sativus L. HOM05D006840 ORTHO05D008588 1.4e-18 97.8 276 29.0
RcHm_v2.0_Chr3g0447741 Rosa chinensis HOM05D006840 ORTHO05D008588 1.4e-18 97.8 245 30.6
TPR.G23771 Trifolium pratense HOM05D006840 ORTHO05D008588 1.4e-18 97.8 237 30.4
BolC2t08265H Brassica oleracea HOM05D006840 ORTHO05D008588 1.8e-18 97.4 226 30.1
AagrBONN_evm.TU.Sc2ySwM_228.2548 Anthoceros agrestis HOM05D006840 ORTHO05D008588 2.4e-18 97.1 204 34.3
Psat3g102720 Pisum sativum HOM05D006840 ORTHO05D008588 2.4e-18 97.1 237 29.5
PGR119G2059 Punica granatum HOM05D006840 ORTHO05D008588 2.4e-18 97.1 237 31.2
BcaC03g14685 Brassica carinata HOM05D006840 ORTHO05D008588 3.1e-18 96.7 226 29.6
ECA232G2794 Erigeron canadensis HOM05D006840 ORTHO05D008588 3.1e-18 96.7 247 31.2
A02p13110 Brassica napus HOM05D006840 ORTHO05D008588 4.0e-18 96.3 226 29.6
BraA02t06367Z Brassica rapa HOM05D006840 ORTHO05D008588 4.0e-18 96.3 226 29.6
CANSAT54G1191 Cannabis sativa HOM05D006840 ORTHO05D008588 4.0e-18 96.3 223 31.8
MELO3C010008.2 Cucumis melo HOM05D006840 ORTHO05D008588 4.0e-18 96.3 269 29.0
Lj1A575G23 Lonicera japonica HOM05D006840 ORTHO05D008588 4.0e-18 96.3 233 31.8
THA.LOC104821923 Tarenaya hassleriana HOM05D006840 ORTHO05D008588 4.0e-18 96.3 249 31.3
CiPaw.08G114500 Carya illinoinensis HOM05D006840 ORTHO05D008588 5.3e-18 95.9 242 31.4
Migut.F02113 Erythranthe guttata HOM05D006840 ORTHO05D008588 5.3e-18 95.9 250 28.4
Lj1g0027213 Lotus japonicus HOM05D006840 ORTHO05D008588 6.9e-18 95.5 255 30.2
Mapoly0031s0189 Marchantia polymorpha HOM05D006840 ORTHO05D008588 6.9e-18 95.5 258 28.7
Rhsim06G0181200 Rhododendron simsii HOM05D006840 ORTHO05D008588 6.9e-18 95.5 240 30.0
MD12G1264100 Malus domestica HOM05D006840 ORTHO05D008588 9.0e-18 95.1 223 29.1
Manes.13G004800 Manihot esculenta HOM05D006840 ORTHO05D008588 9.0e-18 95.1 273 30.4
Oeu020467.1 Olea europaea HOM05D006840 ORTHO05D008588 9.0e-18 95.1 225 31.6
Atru.BG.274.p Acer truncatum HOM05D006840 ORTHO05D008588 1.2e-17 94.7 239 30.5
Sed0002286 Sechium edule HOM05D006840 ORTHO05D008588 1.2e-17 94.7 240 27.9
Nitab4.5_0000083g0050 Nicotiana tabacum HOM05D006840 ORTHO05D008588 1.5e-17 94.4 226 30.1
C02p21250 Brassica napus HOM05D006840 ORTHO05D008588 2.0e-17 94.0 226 29.2
CSS0048734 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 2.0e-17 94.0 249 30.1
MD04G1245900 Malus domestica HOM05D006840 ORTHO05D008588 2.0e-17 94.0 236 29.2
Solyc04g056580.3 Solanum lycopersicum HOM05D006840 ORTHO05D008588 2.0e-17 94.0 228 30.3
SMO353G0271 Selaginella moellendorffii HOM05D006840 ORTHO05D008588 2.6e-17 93.6 241 32.8
Sopen04g025500 Solanum pennellii HOM05D006840 ORTHO05D008588 2.6e-17 93.6 228 30.3
CSS0032443 Camellia sinensis var. sinensis HOM05D006840 ORTHO05D008588 3.4e-17 93.2 222 31.1
Cc09_g03780 Coffea canephora HOM05D006840 ORTHO05D008588 3.4e-17 93.2 225 32.0
Pp3c15_10950 Physcomitrium patens HOM05D006840 ORTHO05D008588 3.4e-17 93.2 258 29.5
arahy.Tifrunner.gnm1.ann1.1ED5VS Arachis hypogaea HOM05D006840 ORTHO05D008588 4.5e-17 92.8 234 30.8
CAN.G642.5 Capsicum annuum HOM05D006840 ORTHO05D008588 4.5e-17 92.8 217 30.4
CARHR056840 Cardamine hirsuta HOM05D006840 ORTHO05D008588 4.5e-17 92.8 232 29.3
Peaxi162Scf00529g00710 Petunia axillaris HOM05D006840 ORTHO05D008588 7.6e-17 92.0 225 30.2
Sp5g19910 Schrenkiella parvula HOM05D006840 ORTHO05D008588 9.9e-17 91.7 229 30.6
SGA_v2.0_scaffold62G21495 Striga asiatica HOM05D006840 ORTHO05D008588 9.9e-17 91.7 232 30.6
HanXRQChr15g0491491 Helianthus annuus HOM05D006840 ORTHO05D008588 1.3e-16 91.3 256 31.6
Aa31LG2G2360 Aethionema arabicum HOM05D006840 ORTHO05D008588 1.7e-16 90.9 228 31.1
Gohir.D08G247000 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.7e-16 90.9 224 30.4
vmacro12041 Vaccinium macrocarpon HOM05D006840 ORTHO05D008588 1.7e-16 90.9 178 35.4
BcaB05g24097 Brassica carinata HOM05D006840 ORTHO05D008588 2.9e-16 90.1 285 28.1
QL01p049413 Quercus lobata HOM05D006840 ORTHO05D008588 2.9e-16 90.1 257 29.2
Duzib106G1767 Durio zibethinus HOM05D006840 ORTHO05D008588 3.8e-16 89.7 220 31.8
FAN02G1048 Fragaria x ananassa HOM05D006840 ORTHO05D008588 3.8e-16 89.7 222 32.4
Ca_07995_v3 Cicer arietinum L. HOM05D006840 ORTHO05D008588 4.9e-16 89.4 172 33.1
Nitab4.5_0009290g0020 Nicotiana tabacum HOM05D006840 ORTHO05D008588 6.4e-16 89.0 236 27.5
CDE02G0188 Ceratophyllum demersum HOM05D006840 ORTHO05D008588 8.4e-16 88.6 186 33.3
Aqoxy5G00025 Aquilegia oxysepala HOM05D006840 ORTHO05D008588 1.1e-15 88.2 183 31.7
CBR_g8822 Chara braunii HOM05D006840 ORTHO05D008588 1.1e-15 88.2 187 31.6
ClCG03G011690 Citrullus lanatus HOM05D006840 ORTHO05D008588 1.1e-15 88.2 239 29.7
FAN14G4782 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.1e-15 88.2 222 32.0
ATR0215G001 Amborella trichopoda HOM05D006840 ORTHO05D008588 1.4e-15 87.8 298 28.9
Gohir.A08G226600 Gossypium hirsutum HOM05D006840 ORTHO05D008588 1.4e-15 87.8 225 29.3
Cfa006254 Carpinus fangiana HOM05D006840 ORTHO05D008588 1.9e-15 87.4 224 32.1
Lsat_1_v5_gn_0_18400 Lactuca sativa HOM05D006840 ORTHO05D008588 2.4e-15 87.0 273 29.3
Prupe.6G362300 Prunus persica HOM05D006840 ORTHO05D008588 2.4e-15 87.0 226 28.3
Haze_04572 Corylus avellana HOM05D006840 ORTHO05D008588 1.2e-14 84.7 242 30.2
Dinv29090 Davidia involucrata HOM05D006840 ORTHO05D008588 1.2e-14 84.7 215 32.1
TWI36G0520 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.2e-14 84.7 237 28.3
TWI75G0198 Tripterygium wilfordii HOM05D006840 ORTHO05D008588 1.2e-14 84.7 233 29.6
FAN05G5535 Fragaria x ananassa HOM05D006840 ORTHO05D008588 1.6e-14 84.3 222 30.6
Lj1A595G27 Lonicera japonica HOM05D006840 ORTHO05D008588 2.1e-14 84.0 186 33.9
Hund21908 Selenicereus undatus HOM05D006840 ORTHO05D008588 2.7e-14 83.6 272 27.2
Sabra13G0078300 Salix brachista HOM05D006840 ORTHO05D008588 4.6e-14 82.8 256 28.9
Thecc.05G192600 Theobroma cacao HOM05D006840 ORTHO05D008588 4.6e-14 82.8 208 31.2
DCAR_028385 Daucus carota HOM05D006840 ORTHO05D008588 7.9e-14 82.0 249 28.1
Gorai.004G263500 Gossypium raimondii HOM05D006840 ORTHO05D008588 1.5e-12 77.8 250 28.4
Potri.013G085300 Populus trichocarpa HOM05D006840 ORTHO05D008588 5.6e-12 75.9 249 27.3
Cpa.g.sc39.39 Carica papaya HOM05D006840 ORTHO05D008588 9.6e-12 75.1 265 26.8
Ciclev10013335m.g Citrus clementina HOM05D006840 ORTHO05D008588 5.8e-09 65.9 226 26.5
Actinidia31085 Actinidia chinensis HOM05D006840 ORTHO05D008588 6.4e-08 62.4 175 27.4
Nn7g37259 Nelumbo nucifera HOM05D006840 ORTHO05D008588 3.2e-07 60.1 270 27.4


User provided reference genes

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