Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 4.9e-76 287.7 147 100.0
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 3.7e-15 85.5 144 36.8
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 3.7e-15 85.5 144 36.8
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 3.7e-15 85.5 143 39.9
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 4.9e-15 85.1 136 37.5
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 4.9e-15 85.1 118 39.0
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 4.9e-15 85.1 118 39.0
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 8.3e-15 84.3 116 41.4
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 1.1e-14 84.0 136 39.0
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 1.8e-14 83.2 152 38.8
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 2.4e-14 82.8 110 41.8
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 3.1e-14 82.4 117 40.2
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 4.1e-14 82.0 137 35.0
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 4.1e-14 82.0 117 38.5
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 4.1e-14 82.0 113 43.4
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 7.0e-14 81.3 112 41.1
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 7.0e-14 81.3 137 35.8
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 7.0e-14 81.3 116 37.9
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 9.2e-14 80.9 115 40.0
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 1.6e-13 80.1 154 35.7
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 1.6e-13 80.1 154 35.7
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.0e-13 79.7 115 38.3
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.0e-13 79.7 130 33.8
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 2.0e-13 79.7 130 33.8
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 2.0e-13 79.7 118 40.7
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 2.0e-13 79.7 108 39.8
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 2.0e-13 79.7 112 40.2
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 2.7e-13 79.3 112 40.2
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 2.7e-13 79.3 115 38.3
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 2.7e-13 79.3 113 38.9
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 3.5e-13 79.0 150 32.0
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 3.5e-13 79.0 118 39.0
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 3.5e-13 79.0 114 38.6
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 4.5e-13 78.6 116 37.1
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 4.5e-13 78.6 115 38.3
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 4.5e-13 78.6 114 37.7
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 5.9e-13 78.2 128 35.9
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 5.9e-13 78.2 134 35.1
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 5.9e-13 78.2 137 35.0
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 7.8e-13 77.8 126 36.5
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 1.0e-12 77.4 115 40.0
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 1.0e-12 77.4 136 36.8
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 1.0e-12 77.4 132 34.1
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 1.3e-12 77.0 112 39.3
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 1.3e-12 77.0 110 40.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 1.3e-12 77.0 110 38.2
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.3e-12 77.0 130 35.4
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.3e-12 77.0 126 35.7
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 1.7e-12 76.6 110 39.1
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 1.7e-12 76.6 143 32.9
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 2.3e-12 76.3 114 36.8
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 2.3e-12 76.3 114 37.7
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.9e-12 75.9 115 37.4
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 2.9e-12 75.9 126 34.9
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 2.9e-12 75.9 126 34.9
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 3.8e-12 75.5 122 36.1
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 5.0e-12 75.1 114 40.4
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 6.6e-12 74.7 110 37.3
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 6.6e-12 74.7 110 38.2
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 1.1e-11 73.9 138 36.2
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.5e-11 73.6 127 34.6
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.5e-11 73.6 110 38.2
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 1.5e-11 73.6 137 36.5
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.5e-11 73.6 133 37.6
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 1.9e-11 73.2 130 34.6
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.5e-11 72.8 121 36.4
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 3.3e-11 72.4 114 36.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 5.6e-11 71.6 114 36.0
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 5.6e-11 71.6 127 37.8
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 5.6e-11 71.6 115 37.4
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 5.6e-11 71.6 110 38.2
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 7.3e-11 71.2 115 33.9
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 7.3e-11 71.2 130 33.8
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 9.5e-11 70.9 109 35.8
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 1.6e-10 70.1 113 37.2
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 2.1e-10 69.7 112 35.7
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 2.8e-10 69.3 107 41.1
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 3.6e-10 68.9 127 33.9
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 4.7e-10 68.6 116 35.3
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 4.7e-10 68.6 123 37.4
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 6.1e-10 68.2 102 39.2
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 6.1e-10 68.2 110 37.3
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.0e-09 67.4 110 36.4
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 1.4e-09 67.0 108 36.1
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 1.8e-09 66.6 87 41.4
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 2.3e-09 66.2 110 39.1
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 3.1e-09 65.9 110 38.2
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 4.0e-09 65.5 109 35.8
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 4.0e-09 65.5 110 38.2
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 6.8e-09 64.7 111 34.2
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.2e-08 63.9 111 33.3
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 1.2e-08 63.9 105 37.1
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.5e-08 63.5 102 35.3
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.0e-08 63.2 102 35.3
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 4.4e-08 62.0 87 37.9
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 4.4e-08 62.0 103 34.0
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 7.5e-08 61.2 129 29.5
EL10Ac2g04408 Beta vulgaris HOM05D005170 ORTHO05D006985 2.9e-07 59.3 72 38.9
Cc07_g04630 Coffea canephora HOM05D005170 ORTHO05D006985 2.9e-07 59.3 72 41.7
Os06g0275900 Oryza sativa ssp. japonica HOM05D005170 ORTHO05D006985 2.9e-07 59.3 72 40.3
CAN.G497.45 Capsicum annuum HOM05D005170 ORTHO05D006985 6.4e-07 58.2 72 43.1
Eucgr.I02082 Eucalyptus grandis HOM05D005170 ORTHO05D006985 6.4e-07 58.2 65 47.7
Peaxi162Scf00020g02131 Petunia axillaris HOM05D005170 ORTHO05D006985 6.4e-07 58.2 72 41.7
Sopen02g034140 Solanum pennellii HOM05D005170 ORTHO05D006985 6.4e-07 58.2 72 41.7
PGSC0003DMG400001473 Solanum tuberosum HOM05D005170 ORTHO05D006985 6.4e-07 58.2 72 41.7
Ah.16g100870 Amaranthus hybridus HOM05D005170 ORTHO05D006985 8.3e-07 57.8 71 38.0
Dinv34895 Davidia involucrata HOM05D005170 ORTHO05D006985 8.3e-07 57.8 71 43.7
MSTRG.2967 Avicennia marina HOM05D005170 ORTHO05D006985 1.1e-06 57.4 73 41.1
Manes.01G104800 Manihot esculenta HOM05D005170 ORTHO05D006985 1.1e-06 57.4 72 44.4
Nitab4.5_0002171g0080 Nicotiana tabacum HOM05D005170 ORTHO05D006985 1.1e-06 57.4 73 38.4
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 1.4e-06 57.0 77 42.9
Migut.H00575 Erythranthe guttata HOM05D005170 ORTHO05D006985 1.9e-06 56.6 72 40.3
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 2.4e-06 56.2 77 37.7
Nn4g23569 Nelumbo nucifera HOM05D005170 ORTHO05D006985 3.2e-06 55.8 72 40.3
Sc11g0008940 Simmondsia chinensis HOM05D005170 ORTHO05D006985 3.2e-06 55.8 72 38.9
Solyc02g089360.4 Solanum lycopersicum HOM05D005170 ORTHO05D006985 3.2e-06 55.8 72 40.3
Aqoxy3G03767 Aquilegia oxysepala HOM05D005170 ORTHO05D006985 4.1e-06 55.5 71 40.8
CANSAT64G0674 Cannabis sativa HOM05D005170 ORTHO05D006985 4.1e-06 55.5 71 38.0
HanXRQChr12g0380201 Helianthus annuus HOM05D005170 ORTHO05D006985 4.1e-06 55.5 71 39.4
Lj4A126T71 Lonicera japonica HOM05D005170 ORTHO05D006985 4.1e-06 55.5 72 44.4
PGR004G2610 Punica granatum HOM05D005170 ORTHO05D006985 4.1e-06 55.5 71 42.3
CiPaw.03G081400 Carya illinoinensis HOM05D005170 ORTHO05D006985 5.4e-06 55.1 72 43.1
FvH4_6g46110 Fragaria vesca HOM05D005170 ORTHO05D006985 5.4e-06 55.1 71 39.4
FAN14G1739 Fragaria x ananassa HOM05D005170 ORTHO05D006985 5.4e-06 55.1 71 39.4
Hund16252 Selenicereus undatus HOM05D005170 ORTHO05D006985 5.4e-06 55.1 150 28.0
DCAR_007542 Daucus carota HOM05D005170 ORTHO05D006985 7.0e-06 54.7 71 40.8
Nitab4.5_0002978g0100 Nicotiana tabacum HOM05D005170 ORTHO05D006985 7.0e-06 54.7 72 37.5
TAR629G3016 Trochodendron aralioides HOM05D005170 ORTHO05D006985 7.0e-06 54.7 71 42.3
ATR0691G089 Amborella trichopoda HOM05D005170 ORTHO05D006985 9.2e-06 54.3 71 39.4
CDE02G1515 Ceratophyllum demersum HOM05D005170 ORTHO05D006985 9.2e-06 54.3 71 36.6
Lsat_1_v5_gn_3_95261 Lactuca sativa HOM05D005170 ORTHO05D006985 9.2e-06 54.3 71 38.0
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 9.2e-06 54.3 82 37.8
Zm00001eb380550 Zea mays HOM05D005170 ORTHO05D006985 9.2e-06 54.3 73 39.7


User provided reference genes

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