Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g531950 Chlamydomonas reinhardtii HOM05D030211 ORTHO05D000292 0.0e+00 2981.8 1654 100.0
Cre02.g144950 Chlamydomonas reinhardtii HOM05D030211 ORTHO05D000292 3.0e-113 414.8 576 41.5
Cre03.g157400 Chlamydomonas reinhardtii HOM05D030211 ORTHO05D142398 1.1e-91 343.2 656 35.2
Cre02.g144252 Chlamydomonas reinhardtii HOM05D030211 ORTHO05D140173 2.1e-53 216.1 720 28.2
CBR_g50392 Chara braunii HOM05D000413 ORTHO05D000292 3.8e-15 89.0 449 21.2
Cre07.g329882 Chlamydomonas reinhardtii HOM05D000413 ORTHO05D000292 4.2e-14 85.5 324 23.8
DCAR_001493 Daucus carota HOM05D000413 ORTHO05D000292 1.2e-13 84.0 424 21.2
ECA246G1246 Erigeron canadensis HOM05D000413 ORTHO05D000292 2.3e-12 79.7 401 21.2
Pp3c18_16190 Physcomitrium patens HOM05D000413 ORTHO05D000292 5.1e-12 78.6 475 21.3
PSO063G1043 Papaver somniferum HOM05D000413 ORTHO05D000292 1.1e-11 77.4 408 22.1
PSO782G0412 Papaver somniferum HOM05D000413 ORTHO05D000292 1.5e-11 77.0 408 21.8
Aqoxy7G01750 Aquilegia oxysepala HOM05D000413 ORTHO05D000292 2.5e-11 76.3 451 20.2
Sed0008590 Sechium edule HOM05D000413 ORTHO05D000292 2.5e-11 76.3 483 20.5
HanXRQChr17g0539411 Helianthus annuus HOM05D000413 ORTHO05D000292 3.3e-11 75.9 413 21.1
Lj7A710G56 Lonicera japonica HOM05D000413 ORTHO05D000292 1.6e-10 73.6 414 21.5
HanXRQChr10g0313011 Helianthus annuus HOM05D000413 ORTHO05D000292 2.1e-10 73.2 407 20.9
TAR383G0020 Trochodendron aralioides HOM05D000413 ORTHO05D000292 2.1e-10 73.2 398 21.6
Lsat_1_v5_gn_3_27781 Lactuca sativa HOM05D000413 ORTHO05D000292 3.7e-10 72.4 411 21.4
PGSC0003DMG400023769 Solanum tuberosum HOM05D000413 ORTHO05D000292 4.8e-10 72.0 458 20.5
MBI04_g10459_MAGBIO Magnolia biondii HOM05D000413 ORTHO05D000292 8.2e-10 71.2 401 21.4
MCO05G336 Micromonas commoda HOM05D000413 ORTHO05D000292 1.1e-09 70.9 437 24.9
Solyc01g104030.3 Solanum lycopersicum HOM05D000413 ORTHO05D000292 1.1e-09 70.9 458 20.3
Sopen01g046440 Solanum pennellii HOM05D000413 ORTHO05D000292 1.1e-09 70.9 458 20.3
Cc08_g08150 Coffea canephora HOM05D000413 ORTHO05D000292 1.4e-09 70.5 401 21.4
PSO675G7255 Papaver somniferum HOM05D000413 ORTHO05D000292 1.8e-09 70.1 480 19.6
Migut.A00258 Erythranthe guttata HOM05D000413 ORTHO05D000292 2.4e-09 69.7 400 20.5
Potri.006G245000 Populus trichocarpa HOM05D000413 ORTHO05D000292 3.1e-09 69.3 409 20.0
Oeu033996.1 Olea europaea HOM05D000413 ORTHO05D000292 4.1e-09 68.9 424 19.8
Lsat_1_v5_gn_6_10961 Lactuca sativa HOM05D000413 ORTHO05D000292 5.3e-09 68.6 395 20.8
Thecc.02G088700 Theobroma cacao HOM05D000413 ORTHO05D000292 5.3e-09 68.6 396 22.0
C01p16440 Brassica napus HOM05D000413 ORTHO05D000292 6.9e-09 68.2 464 19.8
Thhalv10024449m.g Eutrema salsugineum HOM05D000413 ORTHO05D000292 6.9e-09 68.2 462 19.7
Glyma.08G232100 Glycine max HOM05D000413 ORTHO05D000292 6.9e-09 68.2 414 21.5
PGR044G1858 Punica granatum HOM05D000413 ORTHO05D000292 6.9e-09 68.2 466 22.3
Sp7g20340 Schrenkiella parvula HOM05D000413 ORTHO05D000292 9.0e-09 67.8 462 19.3
PGSC0003DMG400024168 Solanum tuberosum HOM05D000413 ORTHO05D000292 9.0e-09 67.8 457 19.9
HPP92_011952 Vanilla planifolia HOM05D000413 ORTHO05D000292 9.0e-09 67.8 524 19.8
Phvul.011G181800 Phaseolus vulgaris HOM05D000413 ORTHO05D000292 1.2e-08 67.4 484 20.9
Potri.018G035500 Populus trichocarpa HOM05D000413 ORTHO05D000292 1.2e-08 67.4 401 20.4
Rhsim11G0128100 Rhododendron simsii HOM05D000413 ORTHO05D000292 1.2e-08 67.4 535 20.7
HPP92_011933 Vanilla planifolia HOM05D000413 ORTHO05D000292 1.2e-08 67.4 524 19.8
Atru.chr6.577 Acer truncatum HOM05D000413 ORTHO05D000292 1.5e-08 67.0 456 20.0
BcaC09g51151 Brassica carinata HOM05D000413 ORTHO05D000292 1.5e-08 67.0 462 19.3
A01p13570 Brassica napus HOM05D000413 ORTHO05D000292 1.5e-08 67.0 462 19.3
BolC1t01594H Brassica oleracea HOM05D000413 ORTHO05D000292 1.5e-08 67.0 462 19.3
BraA01t01299Z Brassica rapa HOM05D000413 ORTHO05D000292 1.5e-08 67.0 462 19.3
Gohir.D13G033800 Gossypium hirsutum HOM05D000413 ORTHO05D000292 1.5e-08 67.0 476 20.0
Gorai.013G038200 Gossypium raimondii HOM05D000413 ORTHO05D000292 1.5e-08 67.0 476 20.0
Sc07g0001750 Simmondsia chinensis HOM05D000413 ORTHO05D000292 1.5e-08 67.0 451 22.8
Solyc01g010080.3 Solanum lycopersicum HOM05D000413 ORTHO05D000292 1.5e-08 67.0 389 21.9
Sopen01g005630 Solanum pennellii HOM05D000413 ORTHO05D000292 1.5e-08 67.0 389 21.9
CAN.G366.5 Capsicum annuum HOM05D000413 ORTHO05D000292 2.6e-08 66.2 415 20.5
Dinv14203 Davidia involucrata HOM05D000413 ORTHO05D000292 2.6e-08 66.2 406 20.4
Duzib168G0996 Durio zibethinus HOM05D000413 ORTHO05D000292 2.6e-08 66.2 329 24.3
Nitab4.5_0001965g0050 Nicotiana tabacum HOM05D000413 ORTHO05D000292 2.6e-08 66.2 415 20.7
PGSC0003DMG400025678 Solanum tuberosum HOM05D000413 ORTHO05D000292 2.6e-08 66.2 389 21.6
Aqoxy5G02497 Aquilegia oxysepala HOM05D000413 ORTHO05D000292 3.4e-08 65.9 530 20.0
Gohir.A13G035500 Gossypium hirsutum HOM05D000413 ORTHO05D000292 3.4e-08 65.9 477 20.3
Sabra18G0036100 Salix brachista HOM05D000413 ORTHO05D000292 3.4e-08 65.9 440 20.0
CANSAT25G0534 Cannabis sativa HOM05D000413 ORTHO05D000292 4.5e-08 65.5 406 20.4
Os05g0428700 Oryza sativa ssp. japonica HOM05D000413 ORTHO05D000292 4.5e-08 65.5 448 19.4
PRCOL_00005390 Prasinoderma coloniale HOM05D000413 ORTHO05D000292 4.5e-08 65.5 212 24.1
BcaNung03754 Brassica carinata HOM05D000413 ORTHO05D000292 5.9e-08 65.1 453 20.1
DCAR_006695 Daucus carota HOM05D000413 ORTHO05D000292 5.9e-08 65.1 306 21.9
TWI34G1260 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 5.9e-08 65.1 464 18.8
MSTRG.25886 Avicennia marina HOM05D000413 ORTHO05D000292 7.6e-08 64.7 374 21.1
CiPaw.05G049100 Carya illinoinensis HOM05D000413 ORTHO05D000292 7.6e-08 64.7 534 20.8
CsaV3_3G019160 Cucumis sativus L. HOM05D000413 ORTHO05D000292 7.6e-08 64.7 462 20.3
Lj6g0008381 Lotus japonicus HOM05D000413 ORTHO05D000292 7.6e-08 64.7 417 21.1
MD15G1113600 Malus domestica HOM05D000413 ORTHO05D000292 7.6e-08 64.7 399 20.1
Duzib052G0150 Durio zibethinus HOM05D000413 ORTHO05D000292 1.0e-07 64.3 475 19.6
Duzib132G0814 Durio zibethinus HOM05D000413 ORTHO05D000292 1.0e-07 64.3 420 21.7
Psat5g025720 Pisum sativum HOM05D000413 ORTHO05D000292 1.0e-07 64.3 415 21.4
Sopen10g009340 Solanum pennellii HOM05D000413 ORTHO05D000292 1.0e-07 64.3 457 19.3
VMungo1127G2091 Vigna mungo HOM05D000413 ORTHO05D000292 1.0e-07 64.3 299 21.7
Carub.0007s1911 Capsella rubella HOM05D000413 ORTHO05D000292 1.3e-07 63.9 460 19.6
Glyma.15G094600 Glycine max HOM05D000413 ORTHO05D000292 1.3e-07 63.9 395 21.8
Pp3c1_560 Physcomitrium patens HOM05D000413 ORTHO05D000292 1.3e-07 63.9 454 21.4
CDE06G0058 Ceratophyllum demersum HOM05D000413 ORTHO05D000292 1.7e-07 63.5 381 21.0
Glyma.13G217800 Glycine max HOM05D000413 ORTHO05D000292 1.7e-07 63.5 395 22.0
PSO063G0708 Papaver somniferum HOM05D000413 ORTHO05D000292 1.7e-07 63.5 420 20.0
Potri.006G249900 Populus trichocarpa HOM05D000413 ORTHO05D000292 1.7e-07 63.5 516 21.5
Solyc10g024360.2 Solanum lycopersicum HOM05D000413 ORTHO05D000292 1.7e-07 63.5 457 19.3
CAN.G798.14 Capsicum annuum HOM05D000413 ORTHO05D000292 2.2e-07 63.2 456 18.9
ECA233G0901 Erigeron canadensis HOM05D000413 ORTHO05D000292 2.2e-07 63.2 348 23.3
Eucgr.F02883 Eucalyptus grandis HOM05D000413 ORTHO05D000292 2.2e-07 63.2 255 20.4
Nitab4.5_0001706g0020 Nicotiana tabacum HOM05D000413 ORTHO05D000292 2.2e-07 63.2 452 20.1
Peaxi162Scf00011g00533 Petunia axillaris HOM05D000413 ORTHO05D000292 2.2e-07 63.2 402 20.1
PRCOL_00000353 Prasinoderma coloniale HOM05D000413 ORTHO05D000292 2.2e-07 63.2 194 24.7
PRCOL_00001023 Prasinoderma coloniale HOM05D000911 ORTHO05D000890 2.2e-07 63.2 239 25.5
Aqoxy5G02496 Aquilegia oxysepala HOM05D000413 ORTHO05D000292 2.9e-07 62.8 397 21.4
CANSAT25G3408 Cannabis sativa HOM05D000413 ORTHO05D000292 2.9e-07 62.8 405 20.2
Nitab4.5_0001965g0020 Nicotiana tabacum HOM05D000413 ORTHO05D000292 2.9e-07 62.8 386 20.7
GSVIVG01022866001 Vitis vinifera HOM05D000413 ORTHO05D000292 2.9e-07 62.8 409 20.8
Medtr2g006870 Medicago truncatula HOM05D000413 ORTHO05D000292 3.8e-07 62.4 555 18.6
Atru.chr7.2307 Acer truncatum HOM05D000413 ORTHO05D000292 5.0e-07 62.0 402 19.9
ATR0044G013 Amborella trichopoda HOM05D000413 ORTHO05D000292 5.0e-07 62.0 390 20.8
Eucgr.G00560 Eucalyptus grandis HOM05D000413 ORTHO05D000292 5.0e-07 62.0 452 20.8
FvH4_3g05650 Fragaria vesca HOM05D000413 ORTHO05D000292 5.0e-07 62.0 376 21.8
PSO170G3905 Papaver somniferum HOM05D000413 ORTHO05D000292 5.0e-07 62.0 340 22.4
Pp3c2_28940 Physcomitrium patens HOM05D000413 ORTHO05D000292 5.0e-07 62.0 410 21.5
RcHm_v2.0_Chr6g0312591 Rosa chinensis HOM05D000413 ORTHO05D000292 5.0e-07 62.0 374 20.6
Actinidia26414 Actinidia chinensis HOM05D000413 ORTHO05D000292 6.5e-07 61.6 308 22.4
Ca_15688_v3 Cicer arietinum L. HOM05D000413 ORTHO05D000292 6.5e-07 61.6 395 20.5
COL.COLO4_11777 Corchorus olitorius HOM05D000413 ORTHO05D000292 6.5e-07 61.6 453 20.1
Thecc.06G151400 Theobroma cacao HOM05D000413 ORTHO05D000292 6.5e-07 61.6 465 19.4
Aa31LG6G4320 Aethionema arabicum HOM05D000413 ORTHO05D000292 8.5e-07 61.2 421 19.7
ATR1134G071 Amborella trichopoda HOM05D000413 ORTHO05D000292 8.5e-07 61.2 427 20.8
CARHR229090 Cardamine hirsuta HOM05D000413 ORTHO05D000292 8.5e-07 61.2 262 20.2
Ciclev10000273m.g Citrus clementina HOM05D000413 ORTHO05D000292 8.5e-07 61.2 384 21.1
Nitab4.5_0005103g0010 Nicotiana tabacum HOM05D000413 ORTHO05D000292 8.5e-07 61.2 452 19.7
AL7G31440 Arabidopsis lyrata HOM05D000413 ORTHO05D000292 1.1e-06 60.8 460 19.3
Cpa.g.sc91.38 Carica papaya HOM05D000413 ORTHO05D000292 1.1e-06 60.8 491 22.8
CiPaw.10G092300 Carya illinoinensis HOM05D000413 ORTHO05D000292 1.1e-06 60.8 394 22.6
Haze_01739 Corylus avellana HOM05D000413 ORTHO05D000292 1.1e-06 60.8 516 20.5
Nn8g39223 Nelumbo nucifera HOM05D000413 ORTHO05D000292 1.1e-06 60.8 415 20.5
Nitab4.5_0000816g0130 Nicotiana tabacum HOM05D000413 ORTHO05D000292 1.1e-06 60.8 256 21.1
PSO455G0125 Papaver somniferum HOM05D000413 ORTHO05D000292 1.1e-06 60.8 479 20.3
SGA_v2.0_scaffold21G09362 Striga asiatica HOM05D000413 ORTHO05D000292 1.1e-06 60.8 284 23.6
CAN.G733.13 Capsicum annuum HOM05D000413 ORTHO05D000292 1.4e-06 60.5 285 20.0
AUR62042717 Chenopodium quinoa HOM05D000413 ORTHO05D000292 1.4e-06 60.5 304 20.1
MELO3C019454.2 Cucumis melo HOM05D000413 ORTHO05D000292 1.4e-06 60.5 462 19.9
Dinv24297 Davidia involucrata HOM05D000413 ORTHO05D000292 1.4e-06 60.5 461 20.2
Manes.16G069300 Manihot esculenta HOM05D000413 ORTHO05D000292 1.4e-06 60.5 395 20.0
Psat1g221320 Pisum sativum HOM05D000413 ORTHO05D000292 1.4e-06 60.5 542 17.9
Psat1g221960 Pisum sativum HOM05D000413 ORTHO05D000292 1.4e-06 60.5 473 19.7
QL02p059600 Quercus lobata HOM05D000413 ORTHO05D000292 1.4e-06 60.5 244 20.1
Sed0004771 Sechium edule HOM05D000413 ORTHO05D000292 1.4e-06 60.5 465 19.1
THA.LOC104813454 Tarenaya hassleriana HOM05D000413 ORTHO05D000292 1.4e-06 60.5 456 19.3
TWI59G0911 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 1.4e-06 60.5 423 20.1
AT4G22200 Arabidopsis thaliana HOM05D000413 ORTHO05D000292 1.9e-06 60.1 460 19.3
CSS0025502 Camellia sinensis var. sinensis HOM05D000413 ORTHO05D000292 1.9e-06 60.1 426 21.4
CAN.G1441.3 Capsicum annuum HOM05D000413 ORTHO05D000292 1.9e-06 60.1 458 20.1
DCAR_003422 Daucus carota HOM05D000413 ORTHO05D000292 1.9e-06 60.1 333 19.8
FAN16G3195 Fragaria x ananassa HOM05D000413 ORTHO05D000292 1.9e-06 60.1 376 21.5
FAN21G0620 Fragaria x ananassa HOM05D000413 ORTHO05D000292 1.9e-06 60.1 376 21.5
PSO170G1054 Papaver somniferum HOM05D000413 ORTHO05D000292 1.9e-06 60.1 479 20.3
PSO170G5308 Papaver somniferum HOM05D000413 ORTHO05D000292 1.9e-06 60.1 477 20.1
PGR042G3153 Punica granatum HOM05D000413 ORTHO05D000292 1.9e-06 60.1 474 20.0
TPR.G12417 Trifolium pratense HOM05D004019 ORTHO05D005136 1.9e-06 60.1 412 20.6
Zm00001eb361550 Zea mays HOM05D000413 ORTHO05D000292 1.9e-06 60.1 309 21.4
CSS0015939 Camellia sinensis var. sinensis HOM05D000413 ORTHO05D000292 2.5e-06 59.7 415 22.4
Duzib187G1403 Durio zibethinus HOM05D000413 ORTHO05D000292 2.5e-06 59.7 272 23.5
Manes.03G064216 Manihot esculenta HOM05D000413 ORTHO05D000292 2.5e-06 59.7 403 21.8
Manes.07G018900 Manihot esculenta HOM05D000413 ORTHO05D000292 2.5e-06 59.7 464 20.0
PGSC0003DMG400021091 Solanum tuberosum HOM05D000413 ORTHO05D000292 2.5e-06 59.7 487 21.6
VMungo0540G0145 Vigna mungo HOM05D000413 ORTHO05D002182 2.5e-06 59.7 398 21.9
GSVIVG01037093001 Vitis vinifera HOM05D000413 ORTHO05D000292 2.5e-06 59.7 244 19.7
EL10Ac6g14066 Beta vulgaris HOM05D000413 ORTHO05D000292 3.2e-06 59.3 212 21.7
Dinv19382 Davidia involucrata HOM05D000413 ORTHO05D000292 3.2e-06 59.3 422 19.9
FvH4_2g30280 Fragaria vesca HOM05D000413 ORTHO05D000292 3.2e-06 59.3 396 19.9
Nitab4.5_0001196g0070 Nicotiana tabacum HOM05D000413 ORTHO05D000292 3.2e-06 59.3 372 21.0
Phvul.006G164300 Phaseolus vulgaris HOM05D000413 ORTHO05D000292 3.2e-06 59.3 305 21.6
Psat4g142960 Pisum sativum HOM05D000413 ORTHO05D000292 3.2e-06 59.3 469 20.0
vmacro01752 Vaccinium macrocarpon HOM05D000413 ORTHO05D000292 3.2e-06 59.3 462 20.1
CANSAT54G0971 Cannabis sativa HOM05D000413 ORTHO05D000292 4.2e-06 58.9 244 19.7
CAN.G108.43 Capsicum annuum HOM05D000122 ORTHO05D000139 4.2e-06 58.9 231 23.8
COL.COLO4_18736 Corchorus olitorius HOM05D000413 ORTHO05D000292 4.2e-06 58.9 400 21.2
FAN24G1239 Fragaria x ananassa HOM05D000413 ORTHO05D000292 4.2e-06 58.9 396 19.9
Gohir.A10G040400 Gossypium hirsutum HOM05D000413 ORTHO05D000292 4.2e-06 58.9 511 20.4
Psat2g046200 Pisum sativum HOM05D000413 ORTHO05D000292 4.2e-06 58.9 244 18.4
QL04p014776 Quercus lobata HOM05D000413 ORTHO05D000292 4.2e-06 58.9 283 21.9
Sabra03G0010300 Salix brachista HOM05D000413 ORTHO05D000292 4.2e-06 58.9 460 20.9
Sp2g11110 Schrenkiella parvula HOM05D000413 ORTHO05D000292 4.2e-06 58.9 312 20.5
PGSC0003DMG400009076 Solanum tuberosum HOM05D000122 ORTHO05D000139 4.2e-06 58.9 231 23.8
TPR.G2151 Trifolium pratense HOM05D000413 ORTHO05D000292 4.2e-06 58.9 520 18.8
DCAR_024742 Daucus carota HOM05D000413 ORTHO05D000292 5.5e-06 58.5 285 19.6
Gorai.011G043500 Gossypium raimondii HOM05D000413 ORTHO05D000292 5.5e-06 58.5 510 19.8
Mapoly0010s0181 Marchantia polymorpha HOM05D000413 ORTHO05D000292 5.5e-06 58.5 453 19.9
Sopen03g003230 Solanum pennellii HOM05D000122 ORTHO05D000139 5.5e-06 58.5 231 23.8
TWI32G1220 Tripterygium wilfordii HOM05D000413 ORTHO05D000292 5.5e-06 58.5 499 22.0
arahy.Tifrunner.gnm1.ann1.X7SBSX Arachis hypogaea HOM05D000413 ORTHO05D000292 7.2e-06 58.2 426 20.2
CAN.G702.41 Capsicum annuum HOM05D000413 ORTHO05D000292 7.2e-06 58.2 490 21.4
Eucgr.F02882 Eucalyptus grandis HOM05D000413 ORTHO05D000292 7.2e-06 58.2 307 20.2
FAN15G1491 Fragaria x ananassa HOM05D000413 ORTHO05D000292 7.2e-06 58.2 397 20.4
SGA_v2.0_scaffold338G49209 Striga asiatica HOM05D000413 ORTHO05D000292 7.2e-06 58.2 456 20.2
Medtr3g108320 Medicago truncatula HOM05D000413 ORTHO05D000292 9.3e-06 57.8 408 20.3
Pp3c7_22600 Physcomitrium patens HOM05D000413 ORTHO05D000292 9.3e-06 57.8 479 22.8
PGSC0003DMG400014505 Solanum tuberosum HOM05D000413 ORTHO05D000292 9.3e-06 57.8 430 20.2


User provided reference genes

Program Settings