Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 5.7e-209 730.7 380 100.0
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.7e-81 306.6 287 57.8
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 6.5e-80 302.0 286 54.5
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 3.6e-78 296.2 280 55.4
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.8e-77 293.9 314 51.0
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.0e-77 292.7 295 51.2
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 5.2e-77 292.4 287 53.7
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 8.8e-77 291.6 287 53.0
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 2.6e-76 290.0 301 49.5
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 2.8e-75 286.6 297 52.5
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 3.7e-75 286.2 281 53.0
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 8.3e-75 285.0 301 48.2
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.4e-74 284.3 288 52.1
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 3.1e-74 283.1 278 53.6
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 3.1e-74 283.1 283 52.3
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 3.1e-74 283.1 282 53.2
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.2e-73 281.2 294 51.0
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.2e-73 281.2 313 49.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 2.7e-73 280.0 294 50.0
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 5.9e-73 278.9 277 52.3
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.3e-72 277.7 279 52.7
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 1.7e-72 277.3 277 52.0
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 1.7e-72 277.3 277 51.6
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.7e-72 277.3 279 51.6
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 2.3e-72 276.9 277 52.0
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 2.3e-72 276.9 278 52.9
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 2.3e-72 276.9 283 50.5
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.8e-72 276.2 280 52.1
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 3.8e-72 276.2 280 52.1
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 5.0e-72 275.8 280 51.8
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 8.6e-72 275.0 284 49.6
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 1.5e-71 274.2 277 50.9
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.5e-71 274.2 278 51.8
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.5e-71 274.2 278 51.1
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.9e-71 273.9 300 47.7
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 1.9e-71 273.9 303 49.2
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.9e-71 273.9 280 52.1
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 2.5e-71 273.5 278 51.1
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.5e-71 273.5 278 51.4
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 4.2e-71 272.7 301 48.2
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 4.2e-71 272.7 277 50.5
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 4.2e-71 272.7 300 50.7
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 4.2e-71 272.7 278 52.2
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 5.5e-71 272.3 278 51.1
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 5.5e-71 272.3 302 48.0
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 7.2e-71 271.9 306 49.3
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 9.5e-71 271.6 295 49.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 9.5e-71 271.6 304 48.7
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 9.5e-71 271.6 295 48.8
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.6e-70 270.8 278 51.1
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 2.8e-70 270.0 282 50.7
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.8e-70 270.0 281 53.0
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.8e-70 270.0 278 52.2
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 2.8e-70 270.0 278 51.4
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 2.8e-70 270.0 278 52.2
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 3.6e-70 269.6 278 52.5
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 4.7e-70 269.2 278 51.1
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 4.7e-70 269.2 299 48.2
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 4.7e-70 269.2 269 52.0
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 6.1e-70 268.9 295 48.1
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 8.0e-70 268.5 277 52.3
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 8.0e-70 268.5 269 52.0
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 8.0e-70 268.5 300 50.0
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 8.0e-70 268.5 281 50.9
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 1.0e-69 268.1 278 49.6
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 1.4e-69 267.7 278 50.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.4e-69 267.7 283 50.9
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.8e-69 267.3 283 50.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.8e-69 267.3 295 48.1
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 1.8e-69 267.3 278 50.7
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 1.8e-69 267.3 281 50.2
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 2.3e-69 266.9 278 50.4
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 3.0e-69 266.5 288 48.6
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 4.0e-69 266.2 278 50.4
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 5.2e-69 265.8 278 50.4
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 5.2e-69 265.8 288 49.0
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 5.2e-69 265.8 283 49.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 8.9e-69 265.0 278 50.0
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 8.9e-69 265.0 278 51.1
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.2e-68 264.6 278 50.4
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.2e-68 264.6 278 50.4
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.2e-68 264.6 283 48.1
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.5e-68 264.2 279 49.1
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 2.0e-68 263.8 283 48.1
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 2.0e-68 263.8 279 49.1
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 2.0e-68 263.8 279 49.1
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 2.0e-68 263.8 281 49.1
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 2.6e-68 263.5 278 50.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 3.4e-68 263.1 278 49.6
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 5.7e-68 262.3 278 50.0
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 7.5e-68 261.9 283 48.1
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 7.5e-68 261.9 283 47.7
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 9.8e-68 261.5 283 48.4
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.3e-67 261.2 279 48.4
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.7e-67 260.8 283 48.1
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.7e-67 260.8 280 48.6
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.7e-67 260.8 280 48.6
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.7e-67 260.8 290 47.9
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 6.3e-67 258.8 291 48.5
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 8.3e-67 258.5 269 50.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.1e-66 258.1 278 47.8
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 1.8e-66 257.3 269 50.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 2.4e-66 256.9 280 48.6
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.1e-66 256.1 291 47.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 9.2e-66 255.0 340 43.5
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.2e-65 254.6 268 48.9
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 5.9e-65 252.3 280 46.8
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 1.7e-64 250.8 319 44.2
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 3.9e-64 249.6 225 54.2
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 2.5e-63 246.9 282 47.9
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-62 244.6 279 47.3
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.6e-62 244.2 218 56.4
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.6e-62 244.2 219 56.6
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 7.8e-57 225.3 252 48.8
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.8e-53 214.2 218 52.3
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.7e-51 207.6 278 43.9
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 3.2e-50 203.4 187 54.5
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.2e-44 184.9 200 45.5
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 1.5e-44 184.5 278 41.4
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 3.7e-43 179.9 151 57.0
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 3.7e-43 179.9 151 57.0
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 4.1e-42 176.4 184 48.9
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 6.6e-40 169.1 283 38.5
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 6.6e-40 169.1 324 37.3
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 2.4e-37 160.6 184 49.5
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 6.4e-35 152.5 167 49.7
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 4.3e-23 113.2 135 44.4
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 3.6e-22 110.2 176 39.8
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 3.6e-22 110.2 138 44.2
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.1e-17 94.4 99 50.5
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 2.3e-16 90.9 121 41.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 2.1e-14 84.3 74 47.3
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.2e-12 78.6 81 51.9
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.2e-12 78.6 72 52.8
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.9e-10 71.2 72 48.6
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 2.5e-07 60.8 82 40.2
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.2e-06 56.2 53 56.6


User provided reference genes

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