Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g508500 Chlamydomonas reinhardtii HOM05D002051 ORTHO05D002041 0.0e+00 1077.0 538 100.0
Cre06.g271700 Chlamydomonas reinhardtii HOM05D002051 ORTHO05D002041 1.7e-97 360.9 502 41.4
PRCOL_00003754 Prasinoderma coloniale HOM05D002051 ORTHO05D002041 2.4e-59 234.2 460 34.3
PRCOL_00004113 Prasinoderma coloniale HOM05D002051 ORTHO05D002041 2.3e-54 217.6 436 34.2
Potri.002G085500 Populus trichocarpa HOM05D002051 ORTHO05D002041 1.5e-16 92.0 226 32.7
PGR142G2150 Punica granatum HOM05D002051 ORTHO05D002041 1.5e-16 92.0 193 33.7
Prupe.8G181800 Prunus persica HOM05D002051 ORTHO05D002041 2.5e-16 91.3 191 35.1
Sabra02G0066900 Salix brachista HOM05D002051 ORTHO05D002041 3.2e-16 90.9 199 34.2
TWI12G1004 Tripterygium wilfordii HOM05D002051 ORTHO05D002041 3.2e-16 90.9 219 34.2
unitig_699.g19916 Utricularia gibba HOM05D002051 ORTHO05D002041 3.2e-16 90.9 194 32.5
Duzib116G0185 Durio zibethinus HOM05D002051 ORTHO05D002041 4.2e-16 90.5 189 36.0
Potri.002G085400 Populus trichocarpa HOM05D002051 ORTHO05D002041 7.2e-16 89.7 199 33.7
ATR0193G018 Amborella trichopoda HOM05D002051 ORTHO05D002041 9.4e-16 89.4 227 34.4
MD05G1143000 Malus domestica HOM05D002051 ORTHO05D002041 9.4e-16 89.4 196 34.2
CDE10G1233 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 1.6e-15 88.6 188 34.0
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 1.6e-15 88.6 189 36.5
RcHm_v2.0_Chr6g0281181 Rosa chinensis HOM05D002051 ORTHO05D002041 1.6e-15 88.6 196 33.7
Gohir.D01G181400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 2.1e-15 88.2 133 42.1
Thecc.08G122400 Theobroma cacao HOM05D002051 ORTHO05D002041 2.1e-15 88.2 192 37.0
C03p22770 Brassica napus HOM05D002051 ORTHO05D002041 2.7e-15 87.8 184 35.3
Aa31LG6G16320 Aethionema arabicum HOM05D002051 ORTHO05D002041 3.6e-15 87.4 193 34.2
AUR62023644 Chenopodium quinoa HOM05D002051 ORTHO05D002041 4.7e-15 87.0 206 33.0
RhsimUnG0094300 Rhododendron simsii HOM05D002051 ORTHO05D002041 4.7e-15 87.0 134 40.3
Zm00001eb279070 Zea mays HOM05D002051 ORTHO05D002041 4.7e-15 87.0 134 41.8
Mapoly0073s0072 Marchantia polymorpha HOM05D002051 ORTHO05D002041 6.1e-15 86.7 130 40.0
SMO351G0186 Selaginella moellendorffii HOM05D002051 ORTHO05D002041 8.0e-15 86.3 196 33.7
Thhalv10016717m.g Eutrema salsugineum HOM05D002051 ORTHO05D002041 1.0e-14 85.9 193 32.6
Gohir.A01G188200 Gossypium hirsutum HOM05D002051 ORTHO05D002041 1.0e-14 85.9 133 42.1
A03p19540 Brassica napus HOM05D002051 ORTHO05D002041 1.4e-14 85.5 184 34.8
Mapoly0023s0037 Marchantia polymorpha HOM05D002051 ORTHO05D002041 1.4e-14 85.5 196 32.7
SGA_v2.0_scaffold28G12007 Striga asiatica HOM05D002051 ORTHO05D002041 1.4e-14 85.5 221 31.7
FAN24G1292 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.8e-14 85.1 193 32.6
Gorai.002G221000 Gossypium raimondii HOM05D002051 ORTHO05D002041 1.8e-14 85.1 133 41.4
Pp3c7_6440 Physcomitrium patens HOM05D002051 ORTHO05D002041 1.8e-14 85.1 186 35.5
CARHR129590 Cardamine hirsuta HOM05D002051 ORTHO05D002041 3.0e-14 84.3 184 33.7
COL.COLO4_03846 Corchorus olitorius HOM05D002051 ORTHO05D002041 3.0e-14 84.3 200 33.5
FAN20G0736 Fragaria x ananassa HOM05D002051 ORTHO05D002041 3.0e-14 84.3 219 33.8
Glyma.20G000500 Glycine max HOM05D002051 ORTHO05D002041 3.0e-14 84.3 182 33.0
MD10G1142800 Malus domestica HOM05D002051 ORTHO05D002041 3.0e-14 84.3 185 35.7
Sed0005930 Sechium edule HOM05D002051 ORTHO05D002041 3.0e-14 84.3 130 41.5
TWI31G0511 Tripterygium wilfordii HOM05D002051 ORTHO05D002041 3.0e-14 84.3 145 38.6
Ciclev10028440m.g Citrus clementina HOM05D002051 ORTHO05D002041 4.0e-14 84.0 191 33.5
EL10Ac3g06452 Beta vulgaris HOM05D002051 ORTHO05D002041 6.8e-14 83.2 176 35.2
CARHR294000 Cardamine hirsuta HOM05D002051 ORTHO05D002041 6.8e-14 83.2 193 32.1
Aqoxy6G00435 Aquilegia oxysepala HOM05D002051 ORTHO05D002041 8.8e-14 82.8 150 37.3
Carub.0004s1712 Capsella rubella HOM05D002051 ORTHO05D002041 8.8e-14 82.8 119 39.5
CiPaw.06G114300 Carya illinoinensis HOM05D002051 ORTHO05D002041 8.8e-14 82.8 196 32.7
BraA03t11207Z Brassica rapa HOM05D002051 ORTHO05D002041 1.2e-13 82.4 184 34.2
AUR62013192 Chenopodium quinoa HOM05D002051 ORTHO05D002041 1.2e-13 82.4 191 32.5
Migut.N03294 Erythranthe guttata HOM05D002051 ORTHO05D002041 1.2e-13 82.4 136 40.4
Gohir.D02G193400 Gossypium hirsutum HOM05D002051 ORTHO05D002041 1.2e-13 82.4 193 33.2
CANSAT25G0469 Cannabis sativa HOM05D002051 ORTHO05D002041 1.5e-13 82.0 133 41.4
CiPaw.05G094500 Carya illinoinensis HOM05D002051 ORTHO05D002041 1.5e-13 82.0 196 32.7
Cc09_g10720 Coffea canephora HOM05D002051 ORTHO05D002041 1.5e-13 82.0 193 33.2
FvH4_2g16990 Fragaria vesca HOM05D002051 ORTHO05D002041 1.5e-13 82.0 148 37.2
FvH4_2g26640 Fragaria vesca HOM05D002051 ORTHO05D002041 1.5e-13 82.0 219 33.3
FAN24G0773 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.5e-13 82.0 219 32.9
Manes.03G096900 Manihot esculenta HOM05D002051 ORTHO05D002041 1.5e-13 82.0 206 30.6
PGR044G1898 Punica granatum HOM05D002051 ORTHO05D002041 1.5e-13 82.0 205 34.1
TAR628G0030 Trochodendron aralioides HOM05D002051 ORTHO05D002041 1.5e-13 82.0 202 32.2
Thhalv10025205m.g Eutrema salsugineum HOM05D002051 ORTHO05D002041 2.0e-13 81.6 193 32.6
QL09p035596 Quercus lobata HOM05D002051 ORTHO05D002041 2.0e-13 81.6 145 37.9
RcHm_v2.0_Chr6g0295491 Rosa chinensis HOM05D002051 ORTHO05D002041 2.0e-13 81.6 133 39.8
Sp7g37520 Schrenkiella parvula HOM05D002051 ORTHO05D002041 2.0e-13 81.6 179 33.5
Sc25g0002300 Simmondsia chinensis HOM05D002051 ORTHO05D002041 2.0e-13 81.6 130 40.0
BraA06t27779Z Brassica rapa HOM05D002051 ORTHO05D002041 2.6e-13 81.3 182 34.1
Nitab4.5_0000783g0010 Nicotiana tabacum HOM05D002051 ORTHO05D002041 2.6e-13 81.3 131 41.2
Nitab4.5_0010601g0020 Nicotiana tabacum HOM05D002051 ORTHO05D002041 2.6e-13 81.3 133 42.1
Hund00098 Selenicereus undatus HOM05D002051 ORTHO05D002041 2.6e-13 81.3 120 40.8
THA.LOC104817223 Tarenaya hassleriana HOM05D002051 ORTHO05D002041 2.6e-13 81.3 192 34.9
TPR.G35531 Trifolium pratense HOM05D002051 ORTHO05D002041 2.6e-13 81.3 148 35.8
Atru.chr5.3575 Acer truncatum HOM05D002051 ORTHO05D002041 3.4e-13 80.9 119 39.5
Gohir.A03G170300 Gossypium hirsutum HOM05D002051 ORTHO05D002041 3.4e-13 80.9 193 33.2
SalBow7G2557 Salvia bowleyana HOM05D002051 ORTHO05D002041 3.4e-13 80.9 200 30.0
Solyc01g112280.3 Solanum lycopersicum HOM05D002051 ORTHO05D002041 3.4e-13 80.9 194 34.0
AUR62004724 Chenopodium quinoa HOM05D002051 ORTHO05D002041 4.4e-13 80.5 195 34.4
Gorai.005G216200 Gossypium raimondii HOM05D002051 ORTHO05D002041 4.4e-13 80.5 193 32.6
Lj5A171T129 Lonicera japonica HOM05D002051 ORTHO05D002041 4.4e-13 80.5 203 31.5
Manes.02G161800 Manihot esculenta HOM05D002051 ORTHO05D002041 4.4e-13 80.5 170 35.3
Thecc.02G147700 Theobroma cacao HOM05D002051 ORTHO05D002041 4.4e-13 80.5 199 33.2
BcaNung01315 Brassica carinata HOM05D002051 ORTHO05D002041 5.7e-13 80.1 182 33.5
BolC1t00005H Brassica oleracea HOM05D002051 ORTHO05D002041 5.7e-13 80.1 182 33.5
CANSAT25G2902 Cannabis sativa HOM05D002051 ORTHO05D002041 5.7e-13 80.1 133 40.6
Carub.0007s0015 Capsella rubella HOM05D002051 ORTHO05D002041 5.7e-13 80.1 180 32.8
Cpa.g.sc9.389 Carica papaya HOM05D002051 ORTHO05D002041 5.7e-13 80.1 193 31.6
Cfa004793 Carpinus fangiana HOM05D002051 ORTHO05D002041 5.7e-13 80.1 191 31.4
Eucgr.F04363 Eucalyptus grandis HOM05D002051 ORTHO05D002041 5.7e-13 80.1 193 32.6
Manes.03G096800 Manihot esculenta HOM05D002051 ORTHO05D002041 5.7e-13 80.1 133 36.8
Peaxi162Scf00362g00143 Petunia axillaris HOM05D002051 ORTHO05D002041 5.7e-13 80.1 131 38.9
Sopen01g054390 Solanum pennellii HOM05D002051 ORTHO05D002041 5.7e-13 80.1 196 35.2
BcaNung01998 Brassica carinata HOM05D002051 ORTHO05D002041 7.5e-13 79.7 182 33.0
BolC7t46796H Brassica oleracea HOM05D002051 ORTHO05D002041 7.5e-13 79.7 182 33.0
CAN.G1645.7 Capsicum annuum HOM05D002051 ORTHO05D002041 7.5e-13 79.7 195 33.8
Cfa015997 Carpinus fangiana HOM05D002051 ORTHO05D002041 7.5e-13 79.7 147 40.8
VMungo0251G2191 Vigna mungo HOM05D002051 ORTHO05D002041 7.5e-13 79.7 177 32.8
BraA01t00004Z Brassica rapa HOM05D002051 ORTHO05D002041 9.8e-13 79.3 182 33.5
Haze_01968 Corylus avellana HOM05D002051 ORTHO05D002041 9.8e-13 79.3 177 33.3
Sp4g17660 Schrenkiella parvula HOM05D002051 ORTHO05D002041 9.8e-13 79.3 182 33.5
FAN27G1239 Fragaria x ananassa HOM05D002051 ORTHO05D002041 1.3e-12 79.0 144 39.6
Hma1.2p1_0032F.1_g018680 Hydrangea macrophylla HOM05D002051 ORTHO05D002041 1.3e-12 79.0 192 32.8
vmacro02344 Vaccinium macrocarpon HOM05D002051 ORTHO05D002041 1.3e-12 79.0 130 37.7
Atru.chr13.1419 Acer truncatum HOM05D002051 ORTHO05D002041 1.7e-12 78.6 194 33.0
HanXRQChr16g0515211 Helianthus annuus HOM05D002051 ORTHO05D002041 1.7e-12 78.6 132 36.4
Mapoly0073s0071 Marchantia polymorpha HOM05D002051 ORTHO05D002041 2.2e-12 78.2 146 36.3
Phvul.003G001200 Phaseolus vulgaris HOM05D002051 ORTHO05D002041 2.2e-12 78.2 119 40.3
AagrBONN_evm.TU.Sc2ySwM_228.317 Anthoceros agrestis HOM05D002051 ORTHO05D002041 2.8e-12 77.8 189 32.3
AUR62010193 Chenopodium quinoa HOM05D002051 ORTHO05D002041 2.8e-12 77.8 119 40.3
Sabra09G0131300 Salix brachista HOM05D002051 ORTHO05D002041 2.8e-12 77.8 133 37.6
Sc26g0000270 Simmondsia chinensis HOM05D002051 ORTHO05D002041 2.8e-12 77.8 133 38.3
Sc26g0000300 Simmondsia chinensis HOM05D002051 ORTHO05D002041 2.8e-12 77.8 133 38.3
BcaNung04229 Brassica carinata HOM05D002051 ORTHO05D002041 3.7e-12 77.4 179 33.0
DCAR_002347 Daucus carota HOM05D002051 ORTHO05D002041 3.7e-12 77.4 134 37.3
Nn6g31635 Nelumbo nucifera HOM05D002051 ORTHO05D002041 3.7e-12 77.4 196 32.1
Aa31LG6G9230 Aethionema arabicum HOM05D002051 ORTHO05D002041 4.8e-12 77.0 200 33.0
Ah.12g059460 Amaranthus hybridus HOM05D002051 ORTHO05D002041 4.8e-12 77.0 136 37.5
BcaC01g05729 Brassica carinata HOM05D002051 ORTHO05D002041 4.8e-12 77.0 184 33.2
Cpa.g.sc36.43 Carica papaya HOM05D002051 ORTHO05D002041 4.8e-12 77.0 133 39.1
ECA233G2334 Erigeron canadensis HOM05D002051 ORTHO05D002041 4.8e-12 77.0 134 38.1
SGA_v2.0_scaffold73G24494 Striga asiatica HOM05D002051 ORTHO05D002041 4.8e-12 77.0 134 37.3
AUR62013193 Chenopodium quinoa HOM05D002051 ORTHO05D002041 6.3e-12 76.6 119 40.3
Migut.N01367 Erythranthe guttata HOM05D002051 ORTHO05D002041 6.3e-12 76.6 131 37.4
QL11p056683 Quercus lobata HOM05D002051 ORTHO05D002041 6.3e-12 76.6 191 31.4
QL11p056748 Quercus lobata HOM05D002051 ORTHO05D002041 6.3e-12 76.6 191 31.4
Sabra04G0140000 Salix brachista HOM05D002051 ORTHO05D002041 6.3e-12 76.6 133 37.6
arahy.Tifrunner.gnm1.ann1.382XQL Arachis hypogaea HOM05D002051 ORTHO05D002041 8.3e-12 76.3 149 34.9
arahy.Tifrunner.gnm1.ann1.K7J832 Arachis hypogaea HOM05D002051 ORTHO05D002041 8.3e-12 76.3 149 34.9
MSTRG.24941 Avicennia marina HOM05D002051 ORTHO05D002041 8.3e-12 76.3 204 29.4
CANSAT25G1142 Cannabis sativa HOM05D002051 ORTHO05D002041 8.3e-12 76.3 119 39.5
AL1G52470 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 1.1e-11 75.9 144 37.5
CAN.G127.1 Capsicum annuum HOM05D002051 ORTHO05D002041 1.1e-11 75.9 134 37.3
CsaV3_6G010020 Cucumis sativus L. HOM05D002051 ORTHO05D002041 1.1e-11 75.9 179 32.4
Potri.004G208100 Populus trichocarpa HOM05D002051 ORTHO05D002041 1.1e-11 75.9 133 36.1
Sed0015905 Sechium edule HOM05D002051 ORTHO05D002041 1.1e-11 75.9 130 37.7
Hund16847 Selenicereus undatus HOM05D002051 ORTHO05D002041 1.1e-11 75.9 160 36.2
CSS0017538 Camellia sinensis var. sinensis HOM05D002051 ORTHO05D002041 1.4e-11 75.5 130 38.5
Carub.0001s3534 Capsella rubella HOM05D002051 ORTHO05D002041 1.4e-11 75.5 133 37.6
AUR62013195 Chenopodium quinoa HOM05D002051 ORTHO05D002041 1.4e-11 75.5 133 36.1
Lj2g0028099 Lotus japonicus HOM05D002051 ORTHO05D002041 1.4e-11 75.5 134 36.6
AUR62010200 Chenopodium quinoa HOM05D002051 ORTHO05D002041 1.8e-11 75.1 133 36.1
AUR62010205 Chenopodium quinoa HOM05D002051 ORTHO05D002041 1.8e-11 75.1 133 36.1
ClCG02G010790 Citrullus lanatus HOM05D002051 ORTHO05D002041 1.8e-11 75.1 179 32.4
Thhalv10011489m.g Eutrema salsugineum HOM05D002051 ORTHO05D002041 1.8e-11 75.1 202 32.2
EL10Ac9g21555 Beta vulgaris HOM05D002051 ORTHO05D002041 2.4e-11 74.7 133 36.8
Duzib248G0377 Durio zibethinus HOM05D002051 ORTHO05D002041 2.4e-11 74.7 119 39.5
QL11p056633 Quercus lobata HOM05D002051 ORTHO05D002041 2.4e-11 74.7 191 30.9
ECA233G3833 Erigeron canadensis HOM05D002051 ORTHO05D002041 3.1e-11 74.3 210 31.0
ECA233G4695 Erigeron canadensis HOM05D002051 ORTHO05D002041 3.1e-11 74.3 210 31.0
Lsat_1_v5_gn_8_119401 Lactuca sativa HOM05D002051 ORTHO05D002041 3.1e-11 74.3 134 37.3
Potri.009G169300 Populus trichocarpa HOM05D002051 ORTHO05D002041 3.1e-11 74.3 133 36.8
AT1G44820 Arabidopsis thaliana HOM05D002051 ORTHO05D002041 4.1e-11 73.9 147 34.0
A10p07320 Brassica napus HOM05D002051 ORTHO05D002041 4.1e-11 73.9 202 31.7
BraSC36t46085Z Brassica rapa HOM05D002051 ORTHO05D002041 4.1e-11 73.9 202 31.7
CiPaw.05G223600 Carya illinoinensis HOM05D002051 ORTHO05D002041 5.4e-11 73.6 192 31.8
Actinidia20581 Actinidia chinensis HOM05D002051 ORTHO05D002041 7.0e-11 73.2 133 36.1
AL4G31480 Arabidopsis lyrata HOM05D002051 ORTHO05D002041 7.0e-11 73.2 130 36.9
Rhsim11G0198400 Rhododendron simsii HOM05D002051 ORTHO05D002041 7.0e-11 73.2 132 37.1
Solyc11g012970.2 Solanum lycopersicum HOM05D002051 ORTHO05D002041 7.0e-11 73.2 136 37.5
Aa31LG9G13370 Aethionema arabicum HOM05D002051 ORTHO05D002041 9.1e-11 72.8 202 30.2
CDE04G1787 Ceratophyllum demersum HOM05D002051 ORTHO05D002041 1.2e-10 72.4 133 36.8
Pp3c18_13490 Physcomitrium patens HOM05D002051 ORTHO05D002041 1.2e-10 72.4 139 37.4
Sp1g33680 Schrenkiella parvula HOM05D002051 ORTHO05D002041 1.2e-10 72.4 210 31.4
PGSC0003DMG400000909 Solanum tuberosum HOM05D002051 ORTHO05D002041 1.2e-10 72.4 134 36.6
Peaxi162Scf00485g00104 Petunia axillaris HOM05D002051 ORTHO05D002041 2.0e-10 71.6 134 36.6
CARHR036070 Cardamine hirsuta HOM05D002051 ORTHO05D002041 2.7e-10 71.2 133 36.1
DCAR_017408 Daucus carota HOM05D002051 ORTHO05D002041 2.7e-10 71.2 196 30.1
Hund00099 Selenicereus undatus HOM05D002051 ORTHO05D002041 3.5e-10 70.9 144 36.1
Sopen11g007730 Solanum pennellii HOM05D002051 ORTHO05D002041 4.5e-10 70.5 136 36.0
DCAR_022610 Daucus carota HOM05D002051 ORTHO05D002041 7.7e-10 69.7 118 36.4
Lsat_1_v5_gn_8_24621 Lactuca sativa HOM05D002051 ORTHO05D002041 1.7e-09 68.6 134 34.3
Aqoxy6G01536 Aquilegia oxysepala HOM05D002051 ORTHO05D002041 6.5e-09 66.6 133 33.8
AUR62010192 Chenopodium quinoa HOM05D002051 ORTHO05D002041 1.1e-08 65.9 133 34.6
AUR62010194 Chenopodium quinoa HOM05D002051 ORTHO05D002041 5.5e-08 63.5 119 37.0
Nn5g28863 Nelumbo nucifera HOM05D002051 ORTHO05D002041 1.0e-06 59.3 147 32.0
FAN15G0507 Fragaria x ananassa HOM05D002051 ORTHO05D002041 5.2e-06 57.0 218 29.4


User provided reference genes

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