Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 3.3e-273 944.5 492 100.0
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 6.3e-83 312.4 376 51.1
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 1.4e-82 311.2 366 52.2
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 9.0e-82 308.5 375 50.4
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 9.0e-82 308.5 334 53.3
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 2.0e-81 307.4 456 45.2
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 3.4e-81 306.6 370 50.0
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 5.9e-81 305.8 397 48.1
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 5.9e-81 305.8 331 52.6
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 1.0e-80 305.1 434 45.6
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 1.0e-80 305.1 395 46.1
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 1.3e-80 304.7 390 48.5
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 2.2e-80 303.9 388 48.7
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 6.5e-80 302.4 380 48.4
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 6.5e-80 302.4 380 48.4
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 8.5e-80 302.0 383 48.0
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.1e-79 301.6 376 48.7
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.4e-79 301.2 382 47.9
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 2.5e-79 300.4 382 48.2
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 2.5e-79 300.4 369 49.6
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 3.2e-79 300.1 393 47.1
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 4.2e-79 299.7 382 47.1
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 4.2e-79 299.7 393 47.3
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 7.2e-79 298.9 374 49.2
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 7.2e-79 298.9 377 48.0
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 9.4e-79 298.5 383 47.8
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 9.4e-79 298.5 337 52.2
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.2e-78 298.1 381 48.6
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 2.1e-78 297.4 380 48.4
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.1e-78 297.4 393 46.3
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 2.7e-78 297.0 397 45.8
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 3.6e-78 296.6 382 47.1
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 3.6e-78 296.6 392 48.5
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 3.6e-78 296.6 357 49.3
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 4.6e-78 296.2 371 47.4
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 6.1e-78 295.8 372 49.2
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 1.0e-77 295.0 403 47.6
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 1.4e-77 294.7 406 46.8
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 1.4e-77 294.7 360 50.6
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.8e-77 294.3 369 48.8
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 2.3e-77 293.9 373 48.3
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 2.3e-77 293.9 380 47.1
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 3.0e-77 293.5 399 46.6
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 3.0e-77 293.5 374 49.2
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 3.0e-77 293.5 417 44.4
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 3.0e-77 293.5 361 48.8
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 3.0e-77 293.5 371 49.1
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 3.9e-77 293.1 327 51.1
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 5.1e-77 292.7 355 50.4
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 6.7e-77 292.4 367 49.9
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 8.8e-77 292.0 380 47.9
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 8.8e-77 292.0 376 47.9
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 1.1e-76 291.6 394 47.7
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 1.5e-76 291.2 390 46.4
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 2.5e-76 290.4 371 47.2
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.3e-76 290.0 370 47.3
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 3.3e-76 290.0 386 44.6
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 4.3e-76 289.7 377 48.3
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 5.7e-76 289.3 398 47.0
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 5.7e-76 289.3 402 44.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 7.4e-76 288.9 371 48.5
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 7.4e-76 288.9 320 53.4
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 9.7e-76 288.5 407 44.2
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.3e-75 288.1 373 47.7
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 2.8e-75 287.0 380 47.9
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 3.7e-75 286.6 320 51.9
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 3.7e-75 286.6 378 46.8
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 4.8e-75 286.2 369 48.5
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 8.2e-75 285.4 328 51.2
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 8.2e-75 285.4 320 51.6
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 1.1e-74 285.0 307 53.7
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 3.1e-74 283.5 307 54.7
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 5.3e-74 282.7 335 50.1
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 9.1e-74 282.0 414 44.4
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 1.5e-73 281.2 384 47.4
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 2.6e-73 280.4 378 46.0
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 2.6e-73 280.4 440 42.0
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 2.9e-72 276.9 377 46.2
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 5.5e-71 272.7 299 54.5
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 7.2e-71 272.3 307 53.1
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.2e-70 271.6 345 50.1
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 2.7e-70 270.4 381 44.9
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 3.6e-70 270.0 377 46.2
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 7.9e-70 268.9 381 43.6
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 1.4e-69 268.1 380 43.7
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 8.8e-69 265.4 385 46.2
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 2.2e-67 260.8 383 44.1
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 1.1e-66 258.5 383 43.6
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.8e-66 257.7 437 40.5
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 1.5e-63 248.1 290 50.7
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 3.2e-63 246.9 349 45.3
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 1.2e-62 245.0 329 46.2
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 1.6e-62 244.6 318 46.2
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 1.8e-61 241.1 277 50.9
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.8e-59 233.0 336 41.1
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 6.3e-59 232.6 383 41.3
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 1.0e-56 225.3 525 33.7
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.1e-55 221.9 255 52.2
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 3.0e-53 213.8 272 47.4
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 4.0e-53 213.4 258 51.2
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 5.7e-52 209.5 257 50.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 5.7e-52 209.5 339 44.0
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.2e-51 207.6 284 47.2
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 3.7e-51 206.8 457 35.9
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 6.3e-51 206.1 318 41.8
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 5.9e-49 199.5 269 47.2
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 6.8e-37 159.5 230 43.9
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 1.2e-36 158.7 172 55.8
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.3e-35 155.2 153 52.3
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 3.2e-34 150.6 158 53.2
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 9.2e-34 149.1 163 49.1
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 9.8e-28 129.0 202 42.1
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 1.4e-21 108.6 143 49.7
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 8.9e-13 79.3 105 44.8
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 1.7e-11 75.1 105 42.9
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.1e-09 68.2 148 35.1
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 1.0e-08 65.9 61 60.7
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 3.9e-08 63.9 83 49.4
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 8.6e-08 62.8 61 54.1


User provided reference genes

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