Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 0.0e+00 3033.0 1967 100.0
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 4.3e-98 364.8 1584 27.8
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 7.5e-95 354.0 1457 25.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 3.2e-85 322.0 1458 22.9
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 7.0e-85 320.9 1496 23.2
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 7.0e-85 320.9 1458 23.2
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 3.5e-84 318.5 1472 23.2
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.5e-84 318.5 1458 23.0
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 3.0e-83 315.5 1459 23.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 5.0e-83 314.7 1453 23.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 1.9e-82 312.8 1454 23.2
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 4.3e-82 311.6 1471 23.9
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 4.3e-82 311.6 1458 23.2
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 4.3e-82 311.6 1454 23.0
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 5.6e-82 311.2 1453 22.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 7.3e-82 310.8 1453 23.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 9.5e-82 310.5 1471 23.8
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 9.5e-82 310.5 1453 23.1
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.6e-81 309.7 1460 22.8
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 2.1e-81 309.3 1455 23.0
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.1e-81 309.3 1456 23.4
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 4.7e-81 308.1 1467 23.5
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 4.7e-81 308.1 1454 23.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 6.2e-81 307.8 1467 23.2
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 8.1e-81 307.4 1454 22.6
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 8.1e-81 307.4 1454 22.8
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 1.1e-80 307.0 1454 23.1
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 2.3e-80 305.8 1454 23.5
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 4.0e-80 305.1 1470 23.4
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 4.0e-80 305.1 1470 23.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 4.0e-80 305.1 1460 22.5
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 5.2e-80 304.7 1457 22.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 5.2e-80 304.7 1458 23.0
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 2.0e-79 302.8 1451 22.8
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 2.0e-79 302.8 1459 22.5
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 2.6e-79 302.4 1452 23.5
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 4.4e-79 301.6 1452 22.5
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 4.4e-79 301.6 1452 22.3
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 4.4e-79 301.6 1453 22.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 5.8e-79 301.2 1452 22.3
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 7.5e-79 300.8 1455 23.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 7.5e-79 300.8 1077 25.5
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 9.8e-79 300.4 1453 22.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 9.8e-79 300.4 1453 22.8
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 9.8e-79 300.4 1472 22.4
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.3e-78 300.1 1455 23.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 2.2e-78 299.3 1473 23.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.9e-78 298.9 1451 23.6
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 4.9e-78 298.1 1474 22.3
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.1e-77 297.0 1453 22.7
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 1.1e-77 297.0 1068 25.5
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 1.4e-77 296.6 1453 22.2
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.4e-77 296.6 1128 25.4
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 1.4e-77 296.6 1081 25.2
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 1.9e-77 296.2 1459 22.1
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 2.4e-77 295.8 1453 22.0
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 2.4e-77 295.8 1452 22.0
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 3.2e-77 295.4 1457 22.7
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 5.4e-77 294.7 1454 22.8
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 3.5e-76 292.0 1453 23.0
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 3.5e-76 292.0 1459 22.7
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 4.6e-76 291.6 1452 22.5
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 6.0e-76 291.2 1453 22.9
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.0e-75 290.4 1455 22.8
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 1.3e-75 290.0 1454 22.6
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 8.6e-75 287.3 1078 25.1
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 1.9e-74 286.2 1079 24.8
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 1.9e-74 286.2 1456 22.7
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 3.3e-74 285.4 1093 25.8
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 3.3e-74 285.4 1142 25.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 7.3e-74 284.3 1078 25.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 3.6e-73 282.0 1137 24.7
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 3.6e-73 282.0 1467 21.9
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 3.6e-73 282.0 1451 22.6
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 3.6e-73 282.0 1523 22.5
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 1.1e-72 280.4 1443 22.0
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.1e-72 280.4 1114 25.3
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 1.8e-72 279.6 1096 24.9
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 1.8e-72 279.6 1475 21.8
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 5.2e-72 278.1 1459 22.8
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 5.2e-72 278.1 1027 25.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 8.9e-72 277.3 1096 24.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 8.9e-72 277.3 1454 21.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 2.0e-71 276.2 1458 22.1
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 5.8e-71 274.6 1462 22.6
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 1.3e-70 273.5 1453 22.0
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 3.7e-70 271.9 1452 21.9
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 6.4e-70 271.2 1470 22.3
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 1.4e-69 270.0 1147 24.7
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 1.4e-69 270.0 1454 21.9
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.2e-69 268.9 1456 21.5
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 4.1e-69 268.5 1107 24.9
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 1.2e-68 266.9 1123 24.6
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 1.6e-68 266.5 1138 24.7
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.1e-68 266.2 1202 25.8
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 2.7e-68 265.8 1257 25.9
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.0e-67 262.3 1107 24.8
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.1e-66 260.4 1294 21.8
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 1.5e-66 260.0 1472 21.4
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 3.3e-66 258.8 1036 25.2
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 3.3e-66 258.8 1438 21.8
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 1.4e-64 253.4 1289 22.7
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 3.4e-63 248.8 955 25.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 2.1e-60 239.6 1452 21.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 2.7e-60 239.2 1531 21.7
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 3.5e-60 238.8 706 28.2
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 5.6e-58 231.5 1459 22.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 9.9e-47 194.1 1155 22.4
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.9e-45 189.9 1041 21.4
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.4e-42 177.9 601 26.5
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 6.2e-41 174.9 1042 22.0
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 8.1e-41 174.5 662 23.6
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.5e-39 170.2 953 22.6
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 7.4e-34 151.4 593 25.6
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 9.6e-34 151.0 539 24.1
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.3e-32 145.2 309 32.7
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.1e-28 133.3 272 33.1
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.9e-27 129.0 288 31.6
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 5.1e-27 128.6 950 20.9
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 9.7e-26 124.4 787 21.2
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.9e-24 118.2 281 27.4
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.1e-20 106.7 827 19.6
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 8.2e-17 94.7 550 19.6
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.4e-16 93.2 204 32.8
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 9.1e-16 91.3 188 30.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.1e-13 84.3 189 25.9
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.4e-13 84.0 164 30.5
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 3.2e-13 82.8 209 25.4
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 2.7e-12 79.7 102 44.1
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.8e-09 68.9 107 39.3
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 6.3e-09 68.6 206 22.3
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 5.9e-07 62.0 198 29.8
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.8e-06 59.3 72 38.9
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 6.5e-06 58.5 69 43.5


User provided reference genes

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