Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g496750 Chlamydomonas reinhardtii HOM05D004278 ORTHO05D005544 1.7e-115 419.5 232 100.0
Ciclev10029226m.g Citrus clementina HOM05D004278 ORTHO05D005544 4.6e-60 235.3 178 79.8
MD10G1076300 Malus domestica HOM05D004278 ORTHO05D005544 1.7e-59 233.4 178 80.3
ClCG02G005010 Citrullus lanatus HOM05D004278 ORTHO05D005544 2.3e-59 233.0 182 76.9
MD05G1066300 Malus domestica HOM05D004278 ORTHO05D005544 2.3e-59 233.0 178 80.3
CiPaw.05G064500 Carya illinoinensis HOM05D004278 ORTHO05D005544 3.9e-59 232.3 203 72.4
TWI75G0915 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 3.9e-59 232.3 178 79.8
Prupe.8G096900 Prunus persica HOM05D004278 ORTHO05D005544 5.1e-59 231.9 178 79.8
Dinv23521 Davidia involucrata HOM05D004278 ORTHO05D005544 6.6e-59 231.5 178 79.2
Thecc.02G085200 Theobroma cacao HOM05D004278 ORTHO05D005544 6.6e-59 231.5 178 79.2
CBR_g34677 Chara braunii HOM05D004278 ORTHO05D005544 8.7e-59 231.1 168 82.7
MELO3C012522.2 Cucumis melo HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 78.7
CsaV3_7G023570 Cucumis sativus L. HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 78.7
Dinv42064 Davidia involucrata HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 79.2
Duzib132G1254 Durio zibethinus HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 79.2
Medtr8g010570 Medicago truncatula HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 79.8
Psat4g207360 Pisum sativum HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 79.8
unitig_22.g5173 Utricularia gibba HOM05D004278 ORTHO05D005544 8.7e-59 231.1 178 78.7
CANSAT01G0337 Cannabis sativa HOM05D004278 ORTHO05D005544 1.1e-58 230.7 178 78.7
Ca_17260_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 1.1e-58 230.7 180 78.3
Mapoly0008s0062 Marchantia polymorpha HOM05D004278 ORTHO05D005544 1.1e-58 230.7 169 82.2
TAR628G0274 Trochodendron aralioides HOM05D004278 ORTHO05D005544 1.1e-58 230.7 178 79.2
Actinidia27895 Actinidia chinensis HOM05D004278 ORTHO05D005544 1.5e-58 230.3 178 78.7
Cc02_g25830 Coffea canephora HOM05D004278 ORTHO05D005544 1.5e-58 230.3 178 79.2
Nn5g29610 Nelumbo nucifera HOM05D004278 ORTHO05D005544 1.5e-58 230.3 178 79.2
Oeu055570.1 Olea europaea HOM05D004278 ORTHO05D005544 1.5e-58 230.3 178 79.2
THA.LOC104804724 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.5e-58 230.3 178 78.7
THA.LOC104815454 Tarenaya hassleriana HOM05D004278 ORTHO05D005544 1.5e-58 230.3 178 78.7
ATR0733G183 Amborella trichopoda HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
arahy.Tifrunner.gnm1.ann1.673KA0 Arachis hypogaea HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
CSS0030568 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
COL.COLO4_25931 Corchorus olitorius HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 78.1
Haze_02384 Corylus avellana HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 78.7
FvH4_5g29280 Fragaria vesca HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
FAN08G1460 Fragaria x ananassa HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
Hma1.2p1_0066F.1_g036410 Hydrangea macrophylla HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
RcHm_v2.0_Chr7g0222141 Rosa chinensis HOM05D004278 ORTHO05D005544 1.9e-58 229.9 178 79.2
SEGI_37571 Sequoiadendron giganteum HOM05D004278 ORTHO05D005544 1.9e-58 229.9 195 75.4
Aa31LG7G1160 Aethionema arabicum HOM05D002153 ORTHO05D002137 2.5e-58 229.6 178 78.7
Ah.01g006270 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.1
Ah.01g019390 Amaranthus hybridus HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.1
MSTRG.5398 Avicennia marina HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.7
Carub.0001s1643 Capsella rubella HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.7
CAN.G1412.6 Capsicum annuum HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 79.2
Cpa.g.sc62.151 Carica papaya HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.7
Gohir.A03G194500 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.7
Gohir.D02G215700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.7
Gorai.005G243700 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.7
MBI16_g28725_MAGBIO Magnolia biondii HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.1
PSO541G5084 Papaver somniferum HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.1
PSO675G8903 Papaver somniferum HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 78.1
Peaxi162Scf00016g00727 Petunia axillaris HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 79.2
TPR.G9766 Trifolium pratense HOM05D004278 ORTHO05D005544 2.5e-58 229.6 178 79.2
TWI31G1137 Tripterygium wilfordii HOM05D004278 ORTHO05D005544 2.5e-58 229.6 197 73.1
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 3.3e-58 229.2 178 78.7
AL1G28860 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
AT1G16700 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
CARHR017160 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
CARHR072680 Cardamine hirsuta HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
Thhalv10008714m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
Gohir.A13G034300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.1
Gorai.013G037100 Gossypium raimondii HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.1
HanXRQChr16g0505671 Helianthus annuus HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
Sp1g14840 Schrenkiella parvula HOM05D004278 ORTHO05D005544 3.3e-58 229.2 178 78.7
Aqoxy2G01125 Aquilegia oxysepala HOM05D004278 ORTHO05D005544 4.3e-58 228.8 178 78.7
DCAR_022973 Daucus carota HOM05D004278 ORTHO05D005544 4.3e-58 228.8 178 78.1
FAN18G1232 Fragaria x ananassa HOM05D004278 ORTHO05D005544 4.3e-58 228.8 178 79.2
HanXRQChr05g0152721 Helianthus annuus HOM05D004278 ORTHO05D005544 4.3e-58 228.8 203 71.4
Pp3c15_4330 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-58 228.8 166 83.1
Pp3c9_8460 Physcomitrium patens HOM05D004278 ORTHO05D005544 4.3e-58 228.8 166 83.1
Potri.009G116000 Populus trichocarpa HOM05D004278 ORTHO05D005544 4.3e-58 228.8 178 78.7
Glyma.15G071900 Glycine max HOM05D004278 ORTHO05D005544 5.6e-58 228.4 178 78.7
Manes.15G163400 Manihot esculenta HOM05D004278 ORTHO05D005544 5.6e-58 228.4 178 78.1
Manes.17G101100 Manihot esculenta HOM05D004278 ORTHO05D005544 5.6e-58 228.4 178 78.1
Os03g0774200 Oryza sativa ssp. japonica HOM05D004278 ORTHO05D005544 5.6e-58 228.4 231 65.4
AL2G39470 Arabidopsis lyrata HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.7
AT1G79010 Arabidopsis thaliana HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.7
A06p12670 Brassica napus HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.1
C05p14970 Brassica napus HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.1
BraA06t24427Z Brassica rapa HOM05D002153 ORTHO05D002137 7.3e-58 228.0 178 78.1
Carub.0002s2588 Capsella rubella HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.7
CAN.G1.42 Capsicum annuum HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.7
CDE10G0378 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 77.5
Lsat_1_v5_gn_9_108541 Lactuca sativa HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.1
Lalb_Chr09g0330921 Lupinus albus HOM05D004278 ORTHO05D005544 7.3e-58 228.0 178 78.7
Rhsim11G0177100 Rhododendron simsii HOM05D004278 ORTHO05D005544 7.3e-58 228.0 194 73.7
EL10Ac9g21724 Beta vulgaris HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 77.5
BcaB02g07191 Brassica carinata HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
BcaC08g45392 Brassica carinata HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
BcaC08g47465 Brassica carinata HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
A07p27370 Brassica napus HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
A07p44150 Brassica napus HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
C06p30230 Brassica napus HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
C06p52880 Brassica napus HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
BolC6t38186H Brassica oleracea HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
BolC6t40306H Brassica oleracea HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
BraA07t30378Z Brassica rapa HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
BraA07t31923Z Brassica rapa HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
ECA240G2473 Erigeron canadensis HOM05D004278 ORTHO05D005544 9.6e-58 227.6 177 78.0
Glyma.13G241500 Glycine max HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.7
Lsat_1_v5_gn_7_89240 Lactuca sativa HOM05D004278 ORTHO05D005544 9.6e-58 227.6 177 78.0
SalBow6G3946 Salvia bowleyana HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
SalBow6G5126 Salvia bowleyana HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
Sp5g34060 Schrenkiella parvula HOM05D004278 ORTHO05D005544 9.6e-58 227.6 178 78.1
Gohir.D13G032700 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 77.5
Nitab4.5_0000308g0130 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 78.7
Nitab4.5_0004172g0100 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 78.7
Nitab4.5_0005152g0090 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 78.7
Sed0011539 Sechium edule HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 78.1
VMungo0540G2365 Vigna mungo HOM05D004278 ORTHO05D005544 1.2e-57 227.3 178 78.1
Duzib052G0763 Durio zibethinus HOM05D004278 ORTHO05D005544 1.6e-57 226.9 161 85.1
Thhalv10019110m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.1
Lj2g0008973 Lotus japonicus HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.1
Lalb_Chr16g0387561 Lupinus albus HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.1
Phvul.006G187900 Phaseolus vulgaris HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.1
vmacro02107 Vaccinium macrocarpon HOM05D004278 ORTHO05D005544 1.6e-57 226.9 178 78.7
AUR62011323 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 77.5
AUR62016737 Chenopodium quinoa HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 77.5
Eucgr.I00724 Eucalyptus grandis HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.1
Solyc01g109620.3 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.7
Solyc10g051350.2 Solanum lycopersicum HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.7
Sopen01g051810 Solanum pennellii HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.7
Sopen10g023040 Solanum pennellii HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.7
PGSC0003DMG400000726 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.7
PGSC0003DMG400033912 Solanum tuberosum HOM05D004278 ORTHO05D005544 2.1e-57 226.5 178 78.7
PGR042G2304 Punica granatum HOM05D004278 ORTHO05D005544 2.8e-57 226.1 178 78.1
Hund00270 Selenicereus undatus HOM05D004278 ORTHO05D005544 2.8e-57 226.1 178 77.0
GSVIVG01031966001 Vitis vinifera HOM05D004278 ORTHO05D005544 2.8e-57 226.1 178 78.7
Migut.N01239 Erythranthe guttata HOM05D004278 ORTHO05D005544 3.6e-57 225.7 178 78.1
Lj5A197T63 Lonicera japonica HOM05D004278 ORTHO05D005544 3.6e-57 225.7 166 82.5
HPP92_001858 Vanilla planifolia HOM05D004278 ORTHO05D005544 3.6e-57 225.7 176 78.4
Atru.chr5.3016 Acer truncatum HOM05D004278 ORTHO05D005544 6.2e-57 224.9 178 77.0
SGA_v2.0_scaffold58G20535 Striga asiatica HOM05D004278 ORTHO05D005544 6.2e-57 224.9 178 77.5
Nitab4.5_0001361g0250 Nicotiana tabacum HOM05D004278 ORTHO05D005544 1.1e-56 224.2 178 78.1
QL11p043693 Quercus lobata HOM05D004278 ORTHO05D005544 3.1e-56 222.6 177 76.8
Zm00001eb059090 Zea mays HOM05D004278 ORTHO05D005544 4.0e-56 222.2 183 74.9
SMO228G0074 Selaginella moellendorffii HOM05D004278 ORTHO05D005544 1.5e-55 220.3 203 70.0
BcaC05g25531 Brassica carinata HOM05D002153 ORTHO05D002137 2.0e-55 219.9 151 87.4
Actinidia17816 Actinidia chinensis HOM05D004278 ORTHO05D005544 7.6e-55 218.0 146 90.4
MCO04G399 Micromonas commoda HOM05D004278 ORTHO05D005544 1.7e-54 216.9 231 63.6
PRCOL_00001402 Prasinoderma coloniale HOM05D004278 ORTHO05D005544 3.2e-53 212.6 166 76.5
Glyma.05G236100 Glycine max HOM05D004278 ORTHO05D005544 2.7e-52 209.5 146 83.6
Haze_27004 Corylus avellana HOM05D004278 ORTHO05D005544 1.7e-51 206.8 190 70.0
Hund06234 Selenicereus undatus HOM05D004278 ORTHO05D005544 1.3e-49 200.7 234 49.1
CDE10G0028 Ceratophyllum demersum HOM05D004278 ORTHO05D005544 1.6e-49 200.3 139 89.2
Cfa025738 Carpinus fangiana HOM05D004278 ORTHO05D005544 6.2e-49 198.4 160 77.5
Potri.004G154900 Populus trichocarpa HOM05D004278 ORTHO05D005544 1.7e-46 190.3 132 90.2
Gohir.A12G028800 Gossypium hirsutum HOM05D004278 ORTHO05D005544 2.2e-46 189.9 178 66.9
Gorai.008G028900 Gossypium raimondii HOM05D004278 ORTHO05D005544 2.2e-46 189.9 159 64.8
BolC5t30212H Brassica oleracea HOM05D004278 ORTHO05D005544 5.4e-45 185.3 178 64.6
AagrBONN_evm.TU.Sc2ySwM_117.1035 Anthoceros agrestis HOM05D004278 ORTHO05D005544 3.0e-43 179.5 147 80.3
Sc18g0004460 Simmondsia chinensis HOM05D004278 ORTHO05D005544 3.3e-42 176.0 146 77.4
arahy.Tifrunner.gnm1.ann1.Z91YIY Arachis hypogaea HOM05D004278 ORTHO05D005544 2.1e-41 173.3 146 77.4
SGA_v2.0_scaffold32G13166 Striga asiatica HOM05D004278 ORTHO05D005544 5.3e-40 168.7 146 76.0
CSS0043835 Camellia sinensis var. sinensis HOM05D004278 ORTHO05D005544 6.4e-38 161.8 196 50.5
Gohir.D12G028300 Gossypium hirsutum HOM05D004278 ORTHO05D005544 1.5e-34 150.6 188 50.0
Zm00001eb213750 Zea mays HOM05D004278 ORTHO05D005544 1.5e-34 150.6 113 66.4
HPP92_001874 Vanilla planifolia HOM05D004278 ORTHO05D431721 5.1e-27 125.6 142 51.4
Sc08g0000500 Simmondsia chinensis HOM05D004278 ORTHO05D021139 2.2e-25 120.2 92 66.3
Lj2g0023328 Lotus japonicus HOM05D004278 ORTHO05D005544 3.7e-25 119.4 108 56.5
Ca_17266_v3 Cicer arietinum L. HOM05D004278 ORTHO05D005544 6.9e-24 115.2 89 61.8
TAR376G0025 Trochodendron aralioides HOM05D002092 ORTHO05D005410 1.2e-23 114.4 87 62.1
TAR625G0183 Trochodendron aralioides HOM05D004278 ORTHO05D416112 4.5e-23 112.5 128 48.4
Lsat_1_v5_gn_5_118541 Lactuca sativa HOM05D004278 ORTHO05D021139 1.4e-16 90.9 109 46.8
TAR376G0081 Trochodendron aralioides HOM05D004278 ORTHO05D021139 1.2e-15 87.8 47 87.2
HanXRQChr15g0486481 Helianthus annuus HOM05D004278 ORTHO05D021139 2.6e-15 86.7 78 60.3
Thhalv10017872m.g Eutrema salsugineum HOM05D004278 ORTHO05D005544 5.1e-11 72.4 41 80.5
Ca_28908_v3 Cicer arietinum L. HOM05D004278 ORTHO05D004593 1.3e-09 67.8 110 46.4
Lsat_1_v5_gn_3_134741 Lactuca sativa HOM05D004278 ORTHO05D021139 1.0e-06 58.2 60 51.7


User provided reference genes

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