Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre12.g495300 Chlamydomonas reinhardtii HOM05D004449 ORTHO05D005473 3.7e-166 588.2 306 100.0
AagrBONN_evm.TU.Sc2ySwM_344.169 Anthoceros agrestis HOM05D004449 ORTHO05D005473 1.5e-106 390.2 268 69.8
Pp3c12_22840 Physcomitrium patens HOM05D004449 ORTHO05D005473 3.4e-103 379.0 262 70.2
Aqoxy1G00845 Aquilegia oxysepala HOM05D004449 ORTHO05D005473 2.5e-98 362.8 261 67.8
Sc02g0000280 Simmondsia chinensis HOM05D004449 ORTHO05D005473 2.5e-98 362.8 261 67.8
PSO384G3644 Papaver somniferum HOM05D004449 ORTHO05D005473 3.3e-98 362.5 261 67.4
Nn6g34893 Nelumbo nucifera HOM05D004449 ORTHO05D005473 4.3e-98 362.1 261 68.2
Ciclev10012240m.g Citrus clementina HOM05D004449 ORTHO05D005473 1.2e-97 360.5 259 66.8
PSO339G4690 Papaver somniferum HOM05D004449 ORTHO05D005473 1.6e-97 360.1 261 65.9
CiPaw.10G010000 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.6e-97 359.0 272 65.1
BcaB01g03853 Brassica carinata HOM05D004449 ORTHO05D005473 8.1e-97 357.8 261 65.5
GSVIVG01033847001 Vitis vinifera HOM05D004449 ORTHO05D005473 8.1e-97 357.8 259 67.2
Lsat_1_v5_gn_8_77140 Lactuca sativa HOM05D004449 ORTHO05D005473 1.1e-96 357.5 284 62.7
MBI17_g08343_MAGBIO Magnolia biondii HOM05D004449 ORTHO05D005473 1.8e-96 356.7 283 63.6
Potri.004G090500 Populus trichocarpa HOM05D004449 ORTHO05D005473 1.8e-96 356.7 275 65.1
Zm00001eb287580 Zea mays HOM05D004449 ORTHO05D005473 2.4e-96 356.3 261 65.9
BcaB02g09374 Brassica carinata HOM05D004449 ORTHO05D005473 3.1e-96 355.9 261 65.5
ECA248G0038 Erigeron canadensis HOM05D004449 ORTHO05D005473 3.1e-96 355.9 258 65.9
Gohir.D04G099600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 3.1e-96 355.9 260 66.5
TWI74G1045 Tripterygium wilfordii HOM05D004449 ORTHO05D005473 3.1e-96 355.9 284 62.7
Aa31LG5G21350 Aethionema arabicum HOM05D004449 ORTHO05D005473 4.0e-96 355.5 280 62.5
BraA05t19914Z Brassica rapa HOM05D004449 ORTHO05D005473 4.0e-96 355.5 261 65.5
Sp4g18450 Schrenkiella parvula HOM05D004449 ORTHO05D005473 4.0e-96 355.5 261 65.1
Haze_19615 Corylus avellana HOM05D004449 ORTHO05D005473 5.2e-96 355.1 276 63.4
FvH4_6g18790 Fragaria vesca HOM05D004449 ORTHO05D005473 5.2e-96 355.1 259 66.4
Lj1g0018712 Lotus japonicus HOM05D004449 ORTHO05D005473 5.2e-96 355.1 287 62.7
CANSAT64G1281 Cannabis sativa HOM05D004449 ORTHO05D005473 6.8e-96 354.8 278 64.0
Gorai.009G402500 Gossypium raimondii HOM05D004449 ORTHO05D005473 6.8e-96 354.8 260 66.2
AL4G32330 Arabidopsis lyrata HOM05D004449 ORTHO05D005473 8.9e-96 354.4 261 64.8
Actinidia05427 Actinidia chinensis HOM05D004449 ORTHO05D005473 1.2e-95 354.0 273 65.2
Gohir.A04G062600 Gossypium hirsutum HOM05D004449 ORTHO05D005473 1.2e-95 354.0 259 66.4
AT2G36230 Arabidopsis thaliana HOM05D004449 ORTHO05D005473 1.5e-95 353.6 261 64.4
Cfa016611 Carpinus fangiana HOM05D004449 ORTHO05D005473 1.5e-95 353.6 280 62.1
Ca_00406_v3 Cicer arietinum L. HOM05D004449 ORTHO05D005473 2.0e-95 353.2 261 65.9
ClCG08G005200 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.0e-95 353.2 278 64.7
Thhalv10016966m.g Eutrema salsugineum HOM05D004449 ORTHO05D005473 2.0e-95 353.2 261 64.4
BraA03t11251Z Brassica rapa HOM05D004449 ORTHO05D005473 2.6e-95 352.8 261 64.4
MD14G1023300 Malus domestica HOM05D004449 ORTHO05D005473 2.6e-95 352.8 285 62.5
A05p09610 Brassica napus HOM05D004449 ORTHO05D005473 3.4e-95 352.4 261 64.8
PGR042G0526 Punica granatum HOM05D004449 ORTHO05D005473 3.4e-95 352.4 281 63.7
TPR.G11735 Trifolium pratense HOM05D004449 ORTHO05D005473 3.4e-95 352.4 273 64.1
Medtr2g015010 Medicago truncatula HOM05D004449 ORTHO05D005473 4.4e-95 352.1 275 63.6
MELO3C022184.2 Cucumis melo HOM05D004449 ORTHO05D005473 5.8e-95 351.7 278 64.4
MD12G1036500 Malus domestica HOM05D004449 ORTHO05D005473 5.8e-95 351.7 292 61.6
Sed0019477 Sechium edule HOM05D004449 ORTHO05D005473 5.8e-95 351.7 261 67.0
QL07p038716 Quercus lobata HOM05D004449 ORTHO05D005473 9.9e-95 350.9 261 64.4
QL07p038966 Quercus lobata HOM05D004449 ORTHO05D005473 9.9e-95 350.9 261 64.4
ATR1125G096 Amborella trichopoda HOM05D004449 ORTHO05D005473 1.3e-94 350.5 277 63.2
C03p23440 Brassica napus HOM05D004449 ORTHO05D005473 1.3e-94 350.5 261 64.0
BolC3t14740H Brassica oleracea HOM05D004449 ORTHO05D005473 1.3e-94 350.5 261 64.0
CARHR130470 Cardamine hirsuta HOM05D004449 ORTHO05D005473 1.3e-94 350.5 261 64.0
Carub.0004s1799 Capsella rubella HOM05D004449 ORTHO05D005473 1.7e-94 350.1 261 64.0
CDE07G1047 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.7e-94 350.1 260 64.6
EL10Ac8g19596 Beta vulgaris HOM05D004449 ORTHO05D005473 2.2e-94 349.7 273 64.1
Potri.017G124800 Populus trichocarpa HOM05D004449 ORTHO05D005473 2.2e-94 349.7 285 62.8
RcHm_v2.0_Chr3g0473801 Rosa chinensis HOM05D004449 ORTHO05D005473 2.2e-94 349.7 259 64.9
Manes.08G025500 Manihot esculenta HOM05D004449 ORTHO05D005473 2.9e-94 349.4 259 66.0
A03p20000 Brassica napus HOM05D004449 ORTHO05D005473 3.8e-94 349.0 261 64.0
Eucgr.A02663 Eucalyptus grandis HOM05D004449 ORTHO05D005473 3.8e-94 349.0 287 63.4
TAR623G0834 Trochodendron aralioides HOM05D004449 ORTHO05D005473 3.8e-94 349.0 259 66.0
Cc06_g05800 Coffea canephora HOM05D004449 ORTHO05D005473 4.9e-94 348.6 258 66.3
HanXRQChr03g0063591 Helianthus annuus HOM05D004449 ORTHO05D005473 4.9e-94 348.6 276 62.3
CSS0045328 Camellia sinensis var. sinensis HOM05D004449 ORTHO05D005473 6.4e-94 348.2 258 64.7
FAN02G4498 Fragaria x ananassa HOM05D004449 ORTHO05D005473 6.4e-94 348.2 266 65.0
Lalb_Chr06g0172241 Lupinus albus HOM05D004449 ORTHO05D005473 6.4e-94 348.2 275 64.4
Peaxi162Scf00858g00311 Petunia axillaris HOM05D004449 ORTHO05D005473 8.4e-94 347.8 258 64.7
THA.LOC104804908 Tarenaya hassleriana HOM05D004449 ORTHO05D005473 8.4e-94 347.8 259 65.3
HPP92_001188 Vanilla planifolia HOM05D004449 ORTHO05D005473 1.1e-93 347.4 273 63.0
BolC4t22839H Brassica oleracea HOM05D004449 ORTHO05D005473 1.4e-93 347.1 262 64.5
Zm00001eb020250 Zea mays HOM05D004449 ORTHO05D005473 1.9e-93 346.7 261 65.5
Sopen05g034560 Solanum pennellii HOM05D004449 ORTHO05D005473 2.4e-93 346.3 258 65.5
SalBow3G1569 Salvia bowleyana HOM05D004449 ORTHO05D005473 3.2e-93 345.9 261 64.4
Nitab4.5_0004212g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 7.1e-93 344.7 258 64.7
MSTRG.19262 Avicennia marina HOM05D004449 ORTHO05D005473 9.2e-93 344.4 260 64.6
CAN.G694.90 Capsicum annuum HOM05D004449 ORTHO05D005473 9.2e-93 344.4 258 65.5
Glyma.02G054800 Glycine max HOM05D004449 ORTHO05D005473 9.2e-93 344.4 295 59.3
MCO11G008 Micromonas commoda HOM05D004449 ORTHO05D005473 9.2e-93 344.4 283 60.8
PGSC0003DMG400023338 Solanum tuberosum HOM05D004449 ORTHO05D005473 9.2e-93 344.4 258 65.1
Glyma.13G153700 Glycine max HOM05D004449 ORTHO05D005473 1.2e-92 344.0 277 62.5
SMO271G0065 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 1.2e-92 344.0 263 64.3
Nitab4.5_0000582g0210 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-92 343.6 274 62.8
Nitab4.5_0006507g0050 Nicotiana tabacum HOM05D004449 ORTHO05D005473 1.6e-92 343.6 260 63.5
Phvul.009G260700 Phaseolus vulgaris HOM05D004449 ORTHO05D005473 2.7e-92 342.8 259 64.5
Solyc05g056150.4 Solanum lycopersicum HOM05D004449 ORTHO05D005473 3.5e-92 342.4 289 60.6
SalBow4G0277 Salvia bowleyana HOM05D004449 ORTHO05D005473 7.8e-92 341.3 261 63.6
PRCOL_00002294 Prasinoderma coloniale HOM05D004449 ORTHO05D005473 2.3e-91 339.7 278 63.3
Hma1.2p1_0820F.1_g223850 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.0e-91 339.3 301 59.8
VMungo1309G2207 Vigna mungo HOM05D004449 ORTHO05D005473 3.0e-91 339.3 278 62.2
Hma1.2p1_0084F.1_g043840 Hydrangea macrophylla HOM05D004449 ORTHO05D005473 3.9e-91 339.0 298 60.1
RhsimUnG0066300 Rhododendron simsii HOM05D004449 ORTHO05D005473 5.1e-91 338.6 279 60.6
FAN14G0980 Fragaria x ananassa HOM05D004449 ORTHO05D005473 8.7e-91 337.8 293 58.7
vmacro21413 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.9e-90 336.7 275 59.6
FAN05G3501 Fragaria x ananassa HOM05D004449 ORTHO05D005473 4.3e-90 335.5 293 58.0
FAN05G3651 Fragaria x ananassa HOM05D004449 ORTHO05D005473 5.6e-90 335.1 293 58.4
Migut.J01033 Erythranthe guttata HOM05D004449 ORTHO05D005473 9.6e-90 334.3 289 59.5
vmacro04352 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 8.1e-89 331.3 297 56.2
Duzib093G2067 Durio zibethinus HOM05D004449 ORTHO05D005473 2.4e-88 329.7 264 61.7
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 1.5e-87 327.0 255 64.3
Lj2A137G26 Lonicera japonica HOM05D004449 ORTHO05D005473 1.3e-86 323.9 248 64.5
BcaC02g11725 Brassica carinata HOM05D004449 ORTHO05D005473 8.4e-86 321.2 246 64.2
C04p11920 Brassica napus HOM05D004449 ORTHO05D005473 3.2e-85 319.3 249 63.1
CBR_g21822 Chara braunii HOM05D004449 ORTHO05D005473 3.2e-85 319.3 269 63.6
Mapoly0011s0027 Marchantia polymorpha HOM05D004449 ORTHO05D005473 2.1e-84 316.6 296 54.1
Atru.chr12.1330 Acer truncatum HOM05D004449 ORTHO05D005473 6.0e-84 315.1 279 59.1
SHI27835 Sapria himalayana HOM05D004449 ORTHO05D005473 2.3e-83 313.2 273 55.7
AUR62036483 Chenopodium quinoa HOM05D004449 ORTHO05D005473 8.7e-83 311.2 228 64.9
DCAR_006449 Daucus carota HOM05D004449 ORTHO05D005473 1.6e-81 307.0 223 66.4
BcaC02g11727 Brassica carinata HOM05D004449 ORTHO05D005473 2.1e-81 306.6 251 60.2
Nitab4.5_0000071g0140 Nicotiana tabacum HOM05D004449 ORTHO05D005473 5.3e-80 302.0 295 53.2
SGA_v2.0_scaffold75G24747 Striga asiatica HOM05D004449 ORTHO05D005473 5.4e-77 292.0 260 58.1
AUR62037092 Chenopodium quinoa HOM05D004449 ORTHO05D005473 1.2e-76 290.8 247 60.3
Rhsim07G0247400 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.9e-76 288.1 339 47.2
CiPaw.09G014500 Carya illinoinensis HOM05D004449 ORTHO05D005473 3.0e-75 286.2 269 54.6
Prupe.7G109700 Prunus persica HOM05D004449 ORTHO05D005473 5.6e-74 282.0 228 61.8
Sabra17G0105100 Salix brachista HOM05D001392 ORTHO05D006407 9.6e-74 281.2 263 56.7
Dinv21204 Davidia involucrata HOM05D004449 ORTHO05D005473 1.3e-70 270.8 209 63.2
CsaV3_5G040040 Cucumis sativus L. HOM05D004449 ORTHO05D005473 1.1e-69 267.7 235 57.4
BcaB02g09373 Brassica carinata HOM05D004449 ORTHO05D005473 1.4e-69 267.3 256 54.7
VMungo0647G1368 Vigna mungo HOM05D004449 ORTHO05D005473 4.3e-66 255.8 245 58.0
Atru.chr8.1532 Acer truncatum HOM05D004449 ORTHO05D005473 2.4e-64 250.0 175 68.0
Cpa.g.sc999.2 Carica papaya HOM05D004449 ORTHO05D005473 3.4e-63 246.1 288 49.3
Cfa023382 Carpinus fangiana HOM05D004449 ORTHO05D005473 7.6e-63 245.0 264 49.6
Thecc.05G089600 Theobroma cacao HOM05D004449 ORTHO05D005473 2.9e-62 243.0 190 63.7
Lalb_Chr06g0172381 Lupinus albus HOM05D004449 ORTHO05D005473 1.6e-60 237.3 168 66.7
vmacro04351 Vaccinium macrocarpon HOM05D004449 ORTHO05D005473 1.8e-59 233.8 235 52.3
Rhsim07G0247300 Rhododendron simsii HOM05D004449 ORTHO05D005473 1.5e-55 220.7 187 57.8
RhsimUnG0066500 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.5e-53 213.4 187 56.7
ClCG08G000960 Citrullus lanatus HOM05D004449 ORTHO05D005473 2.3e-51 206.8 181 59.1
COL.COLO4_29729 Corchorus olitorius HOM05D004449 ORTHO05D005473 9.7e-50 201.4 140 69.3
Oeu056880.1 Olea europaea HOM05D004449 ORTHO05D005473 2.2e-49 200.3 147 66.0
Psat1g201080 Pisum sativum HOM05D004449 ORTHO05D005473 1.4e-48 197.6 176 59.7
RcHm_v2.0_Chr5g0027171 Rosa chinensis HOM05D004449 ORTHO05D005473 2.9e-46 189.9 174 56.9
BcaC02g11729 Brassica carinata HOM05D004449 ORTHO05D005473 1.8e-43 180.6 168 57.1
arahy.Tifrunner.gnm1.ann1.1FC84E Arachis hypogaea HOM05D004449 ORTHO05D005473 3.8e-38 162.9 112 68.8
arahy.Tifrunner.gnm1.ann1.IMVN0M Arachis hypogaea HOM05D004449 ORTHO05D005473 3.8e-38 162.9 112 68.8
arahy.Tifrunner.gnm1.ann1.H91IF8 Arachis hypogaea HOM05D004449 ORTHO05D005473 4.2e-37 159.5 114 67.5
Cc11_g01850 Coffea canephora HOM05D004449 ORTHO05D005473 7.2e-37 158.7 141 57.4
arahy.Tifrunner.gnm1.ann1.L677I4 Arachis hypogaea HOM05D004449 ORTHO05D005473 2.1e-36 157.1 114 65.8
SMO308G0039 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.0e-35 153.3 140 55.7
SMO164G0227 Selaginella moellendorffii HOM05D004449 ORTHO05D005473 3.3e-34 149.8 113 64.6
Mapoly0100s0062 Marchantia polymorpha HOM05D004449 ORTHO05D005473 4.8e-33 146.0 125 55.2
ECA233G4866 Erigeron canadensis HOM05D004449 ORTHO05D005473 1.4e-32 144.4 113 60.2
SEGI_28293 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 7.0e-32 142.1 134 56.7
RcHm_v2.0_Chr4g0393091 Rosa chinensis HOM05D004449 ORTHO05D005473 9.4e-29 131.7 106 62.3
CDE04G3206 Ceratophyllum demersum HOM05D004449 ORTHO05D005473 1.7e-25 120.9 102 59.8
RcHm_v2.0_Chr1g0350151 Rosa chinensis HOM05D004449 ORTHO05D005473 9.1e-24 115.2 85 64.7
unitig_8.g4306 Utricularia gibba HOM05D004449 ORTHO05D005473 1.6e-23 114.4 260 31.9
Os05g0400800 Oryza sativa ssp. japonica HOM05D004449 ORTHO05D005473 4.2e-21 106.3 85 61.2
SEGI_22783 Sequoiadendron giganteum HOM05D004449 ORTHO05D005473 5.5e-21 105.9 69 68.1
COL.COLO4_29730 Corchorus olitorius HOM05D004449 ORTHO05D005473 7.2e-21 105.5 85 61.2
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 1.4e-19 101.3 104 52.9
CDE04G2184 Ceratophyllum demersum HOM05D004449 ORTHO05D000837 1.5e-18 97.8 191 35.1
BcaC02g11730 Brassica carinata HOM05D004449 ORTHO05D005473 4.1e-16 89.7 67 65.7
Rhsim07G0247200 Rhododendron simsii HOM05D004449 ORTHO05D005473 7.7e-15 85.5 71 53.5
Lalb_Chr06g0172371 Lupinus albus HOM05D004449 ORTHO05D005473 1.0e-14 85.1 74 60.8
arahy.Tifrunner.gnm1.ann1.E2537D Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-11 75.1 50 68.0
arahy.Tifrunner.gnm1.ann1.TG6NMP Arachis hypogaea HOM05D019151 ORTHO05D005473 1.0e-11 75.1 50 68.0
Sabra04G0060800 Salix brachista HOM05D004449 ORTHO05D005473 3.0e-11 73.6 81 51.9
Rhsim09G0019600 Rhododendron simsii HOM05D004449 ORTHO05D005473 2.6e-10 70.5 74 50.0
RcHm_v2.0_Chr4g0409701 Rosa chinensis HOM05D004449 ORTHO05D005473 7.8e-07 58.9 48 52.1


User provided reference genes

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